Sed0021982 (gene) Chayote v1

Overview


Name	Sed0021982
Type	gene
Organism	Sechium edule (Chayote v1)
Description	HMG-Y-related protein A-like
Location	LG05: 38320612 .. 38322977 (-)
RNA-Seq Expression	Sed0021982
Synteny	Sed0021982

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACTCAAATTCCCTTTTTCGCAAATCTGTGCTCAAACTAAACAGTTTACAGGCAAATGTGTTCTTTGCAACAATCAAAGAACTTGAGGTTCCTTTCTCTATCTGTAGCTGTTTTCTGGGTTTACTCTTCTCTTCTCTGTAGATTTCGCAGAATCAAAACCCTTTCTTTTTCAATTTTCAATGGCGACTGAACTGCTCAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCCTTTTTCTCTTCCGATTTCAGATACCCATCAACGGAAATTCATGATTTGTTCTTCATTTTGCTATTTTTTTCCTCTTAATTCCATCTGGGTTTCGACCCACTGCCTCTAATTTGTACATGGGTTTTTTTTTTTTTTGTTATTGAATTAGGGTTCCTTTTGATTTGTTTCGATTTTGTGTTTTGTTTAGTGGATTTTGTTTTTTTGTTGTTCTGTGGTGATTTGGTGAACAGGGTTAAATTATTCTTTGTTGGGTTTTCGTGTGTTTTCCTTCTCGAATCTGAAAACAGGAAGGTTTTGGGATTTTTGTTTGAAGAGACTGTAGTTTGATTGATTCAGCTGAGATTCCTCTTTTTTTTTTCTTTTTTTTTTTTTCCCTGTTGGGATCTTCTTTGTTGGGTGCAATTTTTGAAGAGAGATTAATGTACTGGTTTCCTTAATAATTTGTTTCCATTGTGAAGTGATTTTGTTTCGAGGATTTTGTTTCAAATGGATGAGATTTGAGATGTATGTGATTAAAATTTTATTCTGGGATGTTCTTCAAAAATTAGAAGAGTGGAAGAATTGAAGATGCTAGATCTGCTTTCTTACTGTGAGGTAAAACAGAATCTTAAGTGAAAATATGATTCCAAATTTGACTTGATTTCAGATCTTCTTACTTCAAAAAGCTAACAAACTAAACAAGTAGATGGTGTGGCCTAGTGATTAAGGTCTAAATGGACTAAGGGTGCGTTTGGAGCACCGGTTTGGTTATGATAGACGGAAGGTTATAATAAACGGTGAGTTATTATAAATGTTGTTTGAGGGGCAAGTTATTATAACATAGATTATGATAAATGGTGTTTGAGGGGCTGATTATGTAACAAAAAGTAATATATGTAAGGTTTAAATAAATGGTCACGTAGGTTTGGATAAACGGGCACACAGGTTTAGGTAACCACCGTTTATAATAAACTGTGGGACAAACATTGGTTGGCTTATTATAACCAACCCGACCGTTTACATAAACTGGAGCCCAAACACACCCTAAGAGTTGATCCTTCAATTCATAGTGGTCATTTATCAATGAAATTGTTTCTTATTAAAAAAAAAACTATTTAAGATTTTTTTTTTATGGAGTTCTTTGCCATCCAAATATTGTAAGGCGAGTGATAATCGTTAAGGTGAATGTAAGTTGGCCTAGATACTCATGTCAAAAGAAAATAAAAACTTAGTTGATAAGCTGGCATTTTGCTTTGAATTCTCTTGAAATTCTGTGAAACAGAATCCAGATTGGTTATTAAGGTTCTTCTTAGATCTGCAAATCATTGAAGATAATAAAAGTGGATCATTCTAAGGAAAAAGGTTTAATTAAAACACCATTTTTTATGGATGGATTTTAAACATTGCAGATGATATATAGGGCTATTGAAGCATTGAGTAGCGACAGTGGCTCAAACAAATCCGCAATTTCAAAGTACATTGAATCAACCTATGGAAACTTGCCAACTGGTCACTCATCTTTGCTCACACATCATTTGAGCATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGACCCCACAGCGCCTCCCCGTCGAGGGCGTGGAAGGCCTCCAAAGCCAAAGGTGCCTCTGCCACCAGGTGCTGCTGCTCTGTCCCCAGCGAAGTTGAGAGGGCGTCCACCTAAGGACCCCAATGCACCTCCAAAACCAGAGCCAGTGCAGATGAAGGTATCTTCTGGGACAGGGAAATCGAGAGGACGGCCAAGGAAATTTCCTCAGCCAGAAACCACAACAGCTCCACCAGCACCGAGCGGGAGGCCGAGAGGTCGGCCTCCTAAGGTGAAGGCTCCATTGACTGAAGCTAGCGTATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTTGACTTTCTCTTCTCTTATCTCTATCTCTCTCTGTTGCTGTGTTAGCAGTTGTAGTTGTATTGCTAGTTTTAGTTTGATGTGGGTGTGGGTGTAATTCTTGTAAAATTGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTCAAAAAGTGAACATTGACCCTTGTGCTAATCATAATTTCTTTCTAAAGATCTTTCATGTCTTCAAA

mRNA sequence

AAAAAAACTCAAATTCCCTTTTTCGCAAATCTGTGCTCAAACTAAACAGTTTACAGGCAAATGTGTTCTTTGCAACAATCAAAGAACTTGAGGTTCCTTTCTCTATCTGTAGCTGTTTTCTGGGTTTACTCTTCTCTTCTCTGTAGATTTCGCAGAATCAAAACCCTTTCTTTTTCAATTTTCAATGGCGACTGAACTGCTCAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATATAGGGCTATTGAAGCATTGAGTAGCGACAGTGGCTCAAACAAATCCGCAATTTCAAAGTACATTGAATCAACCTATGGAAACTTGCCAACTGGTCACTCATCTTTGCTCACACATCATTTGAGCATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGACCCCACAGCGCCTCCCCGTCGAGGGCGTGGAAGGCCTCCAAAGCCAAAGGTGCCTCTGCCACCAGGTGCTGCTGCTCTGTCCCCAGCGAAGTTGAGAGGGCGTCCACCTAAGGACCCCAATGCACCTCCAAAACCAGAGCCAGTGCAGATGAAGGTATCTTCTGGGACAGGGAAATCGAGAGGACGGCCAAGGAAATTTCCTCAGCCAGAAACCACAACAGCTCCACCAGCACCGAGCGGGAGGCCGAGAGGTCGGCCTCCTAAGGTGAAGGCTCCATTGACTGAAGCTAGCGTATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTTGACTTTCTCTTCTCTTATCTCTATCTCTCTCTGTTGCTGTGTTAGCAGTTGTAGTTGTATTGCTAGTTTTAGTTTGATGTGGGTGTGGGTGTAATTCTTGTAAAATTGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTCAAAAAGTGAACATTGACCCTTGTGCTAATCATAATTTCTTTCTAAAGATCTTTCATGTCTTCAAA

Coding sequence (CDS)

ATGGCGACTGAACTGCTCAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATATAGGGCTATTGAAGCATTGAGTAGCGACAGTGGCTCAAACAAATCCGCAATTTCAAAGTACATTGAATCAACCTATGGAAACTTGCCAACTGGTCACTCATCTTTGCTCACACATCATTTGAGCATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGACCCCACAGCGCCTCCCCGTCGAGGGCGTGGAAGGCCTCCAAAGCCAAAGGTGCCTCTGCCACCAGGTGCTGCTGCTCTGTCCCCAGCGAAGTTGAGAGGGCGTCCACCTAAGGACCCCAATGCACCTCCAAAACCAGAGCCAGTGCAGATGAAGGTATCTTCTGGGACAGGGAAATCGAGAGGACGGCCAAGGAAATTTCCTCAGCCAGAAACCACAACAGCTCCACCAGCACCGAGCGGGAGGCCGAGAGGTCGGCCTCCTAAGGTGAAGGCTCCATTGACTGAAGCTAGCGTATAG

Protein sequence

MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHLSMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPNAPPKPEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEASV

Homology

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BLAST of Sed0021982 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo] >KAG6581188.1 hypothetical protein SDJN03_21190, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017928.1 hypothetical protein SDJN02_19794 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.4 bits (760), Expect = 8.5e-77
Identity = 155/182 (85.16%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MA E +NKPPSLPPYPEMI+RAIEAL+SD+GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASGELVFWKNNYMKRDPTAPPRRGRGRPPK KVPLPPG + LSP K RGRPPKDPN
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPG-SVLSPPKPRGRPPKDPN 120

Query: 121 APPK----PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEA 179
           APPK    P+PVQMKVSSGTGK RGRPRKFP+P T  APP PSGRPRGRPPKVK PLTE 
Sbjct: 121 APPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEV 180

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BLAST of Sed0021982 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa] >TYK23933.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.7e-75
Identity = 153/179 (85.47%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+ +NKPPSLPPYPEMI+RAIEAL+SD+GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  ++A+SP K RGRPPKDPN
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPL-SSAISPPKPRGRPPKDPN 120

Query: 121 APPK-PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEASV 179
           APPK P+PVQMKVSSGTGK RGRPRKFPQ  TT APPAPSGRPRGRPPKVKA LTE SV
Sbjct: 121 APPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSV 178

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BLAST of Sed0021982 vs. NCBI nr
Match: XP_038878302.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74
Identity = 151/179 (84.36%), Postives = 162/179 (90.50%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MATE +NKPPSLPPYPEMI+RAIEAL+S++GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSENGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPK PLPP ++ LSP K RGRPPKDPN
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPP-SSVLSPPKPRGRPPKDPN 120

Query: 121 APPK-PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEASV 179
           APPK P+PVQMKVSSGTGK+RGRPRKFP   T  +PP PSGRPRGRPPKVK  LTE SV
Sbjct: 121 APPKPPKPVQMKVSSGTGKARGRPRKFPLATTMPSPPTPSGRPRGRPPKVKTSLTEVSV 178

[Close]

BLAST of Sed0021982 vs. NCBI nr
Match: XP_004145857.1 (HMG-Y-related protein A isoform X2 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 8.8e-74
Identity = 151/179 (84.36%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+ +NKPPSLPPYPEMI+RAIEAL+SD+GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  +   SP K RGRPPKDPN
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSP-KPRGRPPKDPN 120

Query: 121 APPK-PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEASV 179
           APPK P+PVQMKVSSGTGK RGRPRKFPQ  +T APPAPSGRPRGRPPKVKA LTE SV
Sbjct: 121 APPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]

BLAST of Sed0021982 vs. NCBI nr
Match: XP_022143283.1 (HMG-Y-related protein A-like [Momordica charantia])

HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73
Identity = 150/179 (83.80%), Postives = 160/179 (89.39%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MAT  +NKPPSLPPYPEMI+RAIEAL+SD+GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATGGVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLP   A+ SP K RGRPPKDPN
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPSNVAS-SPPKPRGRPPKDPN 120

Query: 121 APPK-PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEASV 179
           APP+ P+PV MKVSSGTGK RGRPRK  +P + TAPPAPSGRPRGRPPK KAPLTE  V
Sbjct: 121 APPQPPKPVTMKVSSGTGKPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGV 178

[Close]

BLAST of Sed0021982 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 115/179 (64.25%), Postives = 135/179 (75.42%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MATE +NKP SLPPYPEMI + +EAL+  +GSNKSAISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           + MK SGEL F +NNYMK DP APP+RGRGRPPKPK PLPPG   +SP + RGRPPKDPN
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPG-TVVSPPRPRGRPPKDPN 120

Query: 121 APPKPEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPA-PSGRPRGRPPKVKAPLTEASV 179
           APPK    + K + G+G+ RGRP+K P+     AP A  SGRPRGRPPKVK  LTE SV
Sbjct: 121 APPKSP--KAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSV 174

[Close]

BLAST of Sed0021982 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.6e-40
Identity = 97/155 (62.58%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 25  ALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHLSMMKASGELVFWKNNYMKRDPTAP 84
           AL+   GSNKSAISKYIE+TYG LP    ++L  HL+ MK SGEL F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPNAPPKPEPVQMKVSSGTGKSRGRPR 144
           P+RGRGRPPKPKVPLPPG   +SP + RGRPPKDPNAPPK    + K +  TG+ RGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPG-TVVSPPRPRGRPPKDPNAPPKSP--KAKATPATGRPRGRPK 120

Query: 145 KFPQPETTTAPPAPS-GRPRGRPPKVKAPLTEASV 179
           K  +     +P A S GRPRGRPPKVK  LTE SV
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSV 150

[Close]

BLAST of Sed0021982 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.4e-34
Identity = 97/186 (52.15%), Postives = 114/186 (61.29%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+   KP  +PPYPEMI  AIE L   SGSNKSAISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  SMMKASGELVFWKNNYMKRD-PTAPPRRGRGRPPKPKVPLPPGAAALSPAKL---RGRPP 120
           + MK SGELVF KNNY +   P APP+RGRGRPPK + P  P  A  SP+     RGRPP
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGRPP 120

Query: 121 KDPNAPPKPEPVQMKVSSGTGKSRGRPRKFPQPETTTAP-----PAPSG-------RPRG 171
           K   A    E    + ++G  K RGRP K  + +   +P     PAP+G       R RG
Sbjct: 121 K---AKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRG 180

[Close]

BLAST of Sed0021982 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-33
Identity = 90/179 (50.28%), Postives = 115/179 (64.25%), Query Frame = 0


Query: 11  SLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHLSMMKASGELV 70
           SLPPYP+MI  AIE+L+  +G NK+ I+K+IEST   LP  H +LL++HL+ MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALS----------PAKLRGRP--PKD 130
             KNNYMK DP APP+RGRGRPPK K      AAA +          P + RGRP  PKD
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKD 141

Query: 131 PNAPPKPEPVQMKVSSGTGKSRGRPRKFPQPET-TTAPPAPSG------RPRGRPPKVK 171
           P+ PP     Q KV +G+G+ RGRP K P+ ++ T A P P+       R RGRPPKVK
Sbjct: 142 PSEPP-----QEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of Sed0021982 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 52/174 (29.89%), Postives = 77/174 (44.25%), Query Frame = 0


Query: 10  PSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHLSMMKASGEL 69
           P+ PPY EMI  AI  L   +GS++ AI+K+IE    +LP+    LL   L    AS +L
Sbjct: 54  PTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKL 113

Query: 70  VFWKNNYMKRDPTAP----------PRRGRGRP-PKPKVPLPPGAAALSPAKLRGRPPKD 129
           V  KN+Y     + P          P   + +P  KPK  + P A   + AK   +    
Sbjct: 114 VKVKNSYKLPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAK--AK 173

Query: 130 PNAPPKPEPVQMKVSSGTGKSRGRPRKFPQPE-TTTAPPAPSGRPRGRPPKVKA 172
           P A  KP       +     ++ +P    +P+    A P  + +P+  P K KA
Sbjct: 174 PAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKA 225

[Close]

BLAST of Sed0021982 vs. ExPASy TrEMBL
Match: A0A6J1J6G8 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.1e-77
Identity = 155/182 (85.16%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MA E +NKPPSLPPYPEMI+RAIEAL+SD+GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASGELVFWKNNYMKRDPTAPPRRGRGRPPK KVPLPPG + LSP K RGRPPKDPN
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPG-SVLSPPKPRGRPPKDPN 120

Query: 121 APPK----PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEA 179
           APPK    P+PVQMKVSSGTGK RGRPRKFP+P T  APP PSGRPRGRPPKVK PLTE 
Sbjct: 121 APPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEV 180

[Close]

BLAST of Sed0021982 vs. ExPASy TrEMBL
Match: A0A6J1F494 (HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.1e-77
Identity = 155/182 (85.16%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MA E +NKPPSLPPYPEMI+RAIEAL+SD+GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASGELVFWKNNYMKRDPTAPPRRGRGRPPK KVPLPPG + LSP K RGRPPKDPN
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPG-SVLSPPKPRGRPPKDPN 120

Query: 121 APPK----PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEA 179
           APPK    P+PVQMKVSSGTGK RGRPRKFP+P T  APP PSGRPRGRPPKVK PLTE 
Sbjct: 121 APPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEV 180

[Close]

BLAST of Sed0021982 vs. ExPASy TrEMBL
Match: A0A5D3DJY3 (HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00090 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.3e-75
Identity = 153/179 (85.47%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+ +NKPPSLPPYPEMI+RAIEAL+SD+GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  ++A+SP K RGRPPKDPN
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPL-SSAISPPKPRGRPPKDPN 120

Query: 121 APPK-PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEASV 179
           APPK P+PVQMKVSSGTGK RGRPRKFPQ  TT APPAPSGRPRGRPPKVKA LTE SV
Sbjct: 121 APPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]

BLAST of Sed0021982 vs. ExPASy TrEMBL
Match: A0A1S3C432 (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.3e-75
Identity = 153/179 (85.47%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+ +NKPPSLPPYPEMI+RAIEAL+SD+GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  ++A+SP K RGRPPKDPN
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPL-SSAISPPKPRGRPPKDPN 120

Query: 121 APPK-PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEASV 179
           APPK P+PVQMKVSSGTGK RGRPRKFPQ  TT APPAPSGRPRGRPPKVKA LTE SV
Sbjct: 121 APPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]

BLAST of Sed0021982 vs. ExPASy TrEMBL
Match: A0A0A0LCH9 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.2e-74
Identity = 151/179 (84.36%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 1   MATELLNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+ +NKPPSLPPYPEMI+RAIEAL+SD+GSNKS ISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  SMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALSPAKLRGRPPKDPN 120
           +MMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  +   SP K RGRPPKDPN
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSP-KPRGRPPKDPN 120

Query: 121 APPK-PEPVQMKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPKVKAPLTEASV 179
           APPK P+PVQMKVSSGTGK RGRPRKFPQ  +T APPAPSGRPRGRPPKVKA LTE SV
Sbjct: 121 APPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]

BLAST of Sed0021982 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-34
Identity = 90/179 (50.28%), Postives = 115/179 (64.25%), Query Frame = 0


Query: 11  SLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHLSMMKASGELV 70
           SLPPYP+MI  AIE+L+  +G NK+ I+K+IEST   LP  H +LL++HL+ MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGAAALS----------PAKLRGRP--PKD 130
             KNNYMK DP APP+RGRGRPPK K      AAA +          P + RGRP  PKD
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKD 141

Query: 131 PNAPPKPEPVQMKVSSGTGKSRGRPRKFPQPET-TTAPPAPSG------RPRGRPPKVK 171
           P+ PP     Q KV +G+G+ RGRP K P+ ++ T A P P+       R RGRPPKVK
Sbjct: 142 PSEPP-----QEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of Sed0021982 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 67/176 (38.07%), Postives = 85/176 (48.30%), Query Frame = 0


Query: 11  SLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHLSMMKASGELV 70
           S PPY +MI  AI AL+   GS+K AIS+YIE  Y  +PT H +LLTHHL  +K SG LV
Sbjct: 74  SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133

Query: 71  FWKNNY-MKRDPTAPPRRGRG---RPPK------PKVPLP-PGAAALSPAKL---RGRPP 130
             K +Y +   P  PP         PP+         PLP P  A+ +P  +   RGRPP
Sbjct: 134 MVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPP 193

Query: 131 KDPNAPPKPEPVQ----MKVSSGTGKSRGRPRKFPQPETTTAPPAPSGRPRGRPPK 169
           K      +P+P+         S    SR    +   P+    P  P  RP GRP K
Sbjct: 194 KAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVKRPPGRPRK 249

[Close]

BLAST of Sed0021982 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 68/194 (35.05%), Postives = 95/194 (48.97%), Query Frame = 0


Query: 13  PPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHLSMMKASGELVFW 72
           PPY EMI  AI AL+   GS+K AIS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNYMKRDPTAPP--------RRGRGRP-PKPKV-------PLPPGAAALSPAKLRGRPP 132
           K +Y     + PP           +G   P+ ++       P+  G+A+    + RGRPP
Sbjct: 126 KKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPP 185

Query: 133 KDPNAPPKPEPVQMKVSSGTGKSRGR----------PRKFPQPETTTAPPAPSGRPR--G 179
           K P    +P+P+Q    +   ++ G+          P   P P T +A   P GRPR  G
Sbjct: 186 K-PKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGP-GRPRKNG 245

[Close]

BLAST of Sed0021982 vs. TAIR 10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 6   LNKPPSLPPYPEMIYRAIEALSSDSGSNKSAISKYIESTYGNLPTGHSSLLTHHLSMMKA 65
           L++ P  P Y  MI+ AI  L+ + G+++ AIS++I+S Y NLP  H++LL+HHL+ +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGELVFWKNN 76
             E++   NN
Sbjct: 109 KREILCDCNN 118

The following BLAST results are available for this feature:

BLAST of Sed0021982 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935331.1	8.5e-77	85.16	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]
XP_008456999.1	2.7e-75	85.47	PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-relat...	[more]
XP_038878302.1	1.0e-74	84.36	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_004145857.1	8.8e-74	84.36	HMG-Y-related protein A isoform X2 [Cucumis sativus]	[more]
XP_022143283.1	1.1e-73	83.80	HMG-Y-related protein A-like [Momordica charantia]	[more]

BLAST of Sed0021982 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	1.3e-51	64.25	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q10370	6.6e-40	62.58	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q9FYS5	2.4e-34	52.15	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]
Q43386	2.7e-33	50.28	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
P37218	1.5e-04	29.89	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]

BLAST of Sed0021982 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6G8	4.1e-77	85.16	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV...	[more]
A0A6J1F494	4.1e-77	85.16	HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 ...	[more]
A0A5D3DJY3	1.3e-75	85.47	HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C432	1.3e-75	85.47	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
A0A0A0LCH9	4.2e-74	84.36	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV...	[more]

BLAST of Sed0021982 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	1.9e-34	50.28	high mobility group A	[more]
AT1G48620.1	2.4e-13	38.07	high mobility group A5	[more]
AT3G18035.1	2.4e-13	35.05	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	1.4e-08	40.00	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 126..145 score: 32.86 coord: 84..96 score: 58.24 coord: 111..122 score: 41.67
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 158..168 score: 68.56 coord: 86..96 score: 69.32 coord: 107..118 score: 54.17
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 86..98 e-value: 58.0 score: 5.3 coord: 109..121 e-value: 2.5 score: 13.1 coord: 137..149 e-value: 3.8 score: 12.0 coord: 160..172 e-value: 2.4 score: 13.2
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 160..170 e-value: 0.77 score: 9.8 coord: 137..145 e-value: 1.6 score: 8.8 coord: 112..120 e-value: 0.31 score: 11.0
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 e-value: 5.1E-19 score: 79.2
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 e-value: 5.4E-9 score: 36.3
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 11..80 score: 20.813337
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 7..86 e-value: 1.7E-13 score: 52.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..178
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 2..174
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 2..174
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 8..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021982.1	Sed0021982.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding