CaUC10G186820 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G186820
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Zf-CCHC domain-containing protein
Location	Ciama_Chr10: 16234845 .. 16236959 (+)
RNA-Seq Expression	CaUC10G186820
Synteny	CaUC10G186820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGAATCTCCCCCTCGTTTCCAGAATCACCCCTATAGATATCAGGATCCTAATTTATGATATCAAGATAATCAATTACCTTTTCAAGAACCCTATGAAGAATTGGGAAATTTCAGACCGAATGCCCAAGAATAATTCCAAGGTTAGAATCACTTTCAACACCAGCAAGGAGGGCCACCTTGGAGACAAGAATCAGGTTATAAGATGAAGATAGACTTACCACCTTACAATGGCCGAATGAATATTGAAGCCTTCGTTGATTGGGTGAAGAACGTGGAAACTTTTCCGACTACGAGAAGATAGAAAGGTAACATTGGTTTTTTTGGAACTTAAAAGTGGATCATCCGCTTGGTGGGATTTAATTACAAACTAATAGAAGGATGTTGGGAAAGAGACCAATCCAAAGTTGGTCCAAGATGTTGCGCTTATTGCAACAGCGTTTCTTGCCTATTAACCACGAACCTCTTCTTTATAACCAATTTCAGCAGTGAACAAGAAACAAGAAGCATTGAGGGATTATACAGAATAATTCCACCGCAAGGAACAATTTGGCTGAGAGCGAAAATCAACATATTGCAAGGTATATTGATGTGCTACGATCCATCGCCACAATAATTGAAGATGATGAGATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAGGACCGGGAAAAGAATCCCTCGGGTTGAAACATCTAGCCAAAACAGAAGGCAATCTCAAGATACTTCCAAAGGGCAGATTGTGGCTTCCACATCCAATACTAAAGGAAAAGAAGTTCATGGCAACAAATCTAAGATCAATCCAAAGGGAAGTTCTAATTCTTTACACCAAAAGAAACCTAATCATTATAATAGACCTAATCTTGGTACGTGTTTTAGGTGTGGACAAACTGGACACTTATCCAATGAATGTCCACAAAGAAGAAACCTTACCATTCAAGAGAAGCAAGAAGAGTTCAACAAGGAAGAAAATGACAGCGATGACATTGAATATACTAATCCAGATGAAGGAAAGGAGTTGTCTTGTGTCCTTCAACGTGTTCTTCTCACACCAATAACAAAAACTAATCCTCAGAGACATGCTCCGTTTCAAGCACATTGTACCATCAATGGCAAAATTTGCAATGTAATAGTTGATAGTGGTAGCAGTGAAAATATGGTTTCCAAAATGCTTGTCTCGGCTCTTAAATTGAAAGTTGATTCCCATCCAAGTCCTGACAAGGTGGGTTGA

mRNA sequence

ATGGTGAAGAATCTCCCCCTCGTTTCCAGAATCACCCCTATAGATATCAGGATCCTAATTTATGATATCAAGATAATCAATTACCTTTTCAAGAACCCTATGAAGAATTGGGAAATTTCAGACCGAATGCCCAAGAATAATTCCAAGAATAATTCCACCGCAAGGAACAATTTGGCTGAGAGCGAAAATCAACATATTGCAAGGACCGGGAAAAGAATCCCTCGGGTTGAAACATCTAGCCAAAACAGAAGGCAATCTCAAGATACTTCCAAAGGGCAGATTGTGGCTTCCACATCCAATACTAAAGGAAAAGAAGTTCATGGCAACAAATCTAAGATCAATCCAAAGGGAAGTTCTAATTCTTTACACCAAAAGAAACCTAATCATTATAATAGACCTAATCTTGGTACGTGTTTTAGGTGTGGACAAACTGGACACTTATCCAATGAATGTCCACAAAGAAGAAACCTTACCATTCAAGAGAAGCAAGAAGAGTTCAACAAGGAAGAAAATGACAGCGATGACATTGAATATACTAATCCAGATGAAGGAAAGGAGTTGTCTTGTGTCCTTCAACGTGTTCTTCTCACACCAATAACAAAAACTAATCCTCAGAGACATGCTCCGTTTCAAGCACATTGTACCATCAATGGCAAAATTTGCAATGTAATAGTTGATAGTGGTAGCAGTGAAAATATGGTTTCCAAAATGCTTGTCTCGGCTCTTAAATTGAAAGTTGATTCCCATCCAAGTCCTGACAAGGTGGGTTGA

Coding sequence (CDS)

ATGGTGAAGAATCTCCCCCTCGTTTCCAGAATCACCCCTATAGATATCAGGATCCTAATTTATGATATCAAGATAATCAATTACCTTTTCAAGAACCCTATGAAGAATTGGGAAATTTCAGACCGAATGCCCAAGAATAATTCCAAGAATAATTCCACCGCAAGGAACAATTTGGCTGAGAGCGAAAATCAACATATTGCAAGGACCGGGAAAAGAATCCCTCGGGTTGAAACATCTAGCCAAAACAGAAGGCAATCTCAAGATACTTCCAAAGGGCAGATTGTGGCTTCCACATCCAATACTAAAGGAAAAGAAGTTCATGGCAACAAATCTAAGATCAATCCAAAGGGAAGTTCTAATTCTTTACACCAAAAGAAACCTAATCATTATAATAGACCTAATCTTGGTACGTGTTTTAGGTGTGGACAAACTGGACACTTATCCAATGAATGTCCACAAAGAAGAAACCTTACCATTCAAGAGAAGCAAGAAGAGTTCAACAAGGAAGAAAATGACAGCGATGACATTGAATATACTAATCCAGATGAAGGAAAGGAGTTGTCTTGTGTCCTTCAACGTGTTCTTCTCACACCAATAACAAAAACTAATCCTCAGAGACATGCTCCGTTTCAAGCACATTGTACCATCAATGGCAAAATTTGCAATGTAATAGTTGATAGTGGTAGCAGTGAAAATATGGTTTCCAAAATGCTTGTCTCGGCTCTTAAATTGAAAGTTGATTCCCATCCAAGTCCTGACAAGGTGGGTTGA

Protein sequence

MVKNLPLVSRITPIDIRILIYDIKIINYLFKNPMKNWEISDRMPKNNSKNNSTARNNLAESENQHIARTGKRIPRVETSSQNRRQSQDTSKGQIVASTSNTKGKEVHGNKSKINPKGSSNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECPQRRNLTIQEKQEEFNKEENDSDDIEYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPFQAHCTINGKICNVIVDSGSSENMVSKMLVSALKLKVDSHPSPDKVG

Homology

[Close]

BLAST of CaUC10G186820 vs. NCBI nr
Match: XP_031744062.1 (uncharacterized protein LOC116404773 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 8.3e-33
Identity = 90/214 (42.06%), Postives = 133/214 (62.15%), Query Frame = 0


Query: 53  TARNNLAESENQHIAR----TGKRIPRVETSSQNRRQSQDT----SKGQIVASTSNT-KG 112
           +AR NL+E+E   +AR    T + +  + + + NRR + +T    SK     STS   KG
Sbjct: 145 SARTNLSENEQHQVARFVGETVEEMIAIRSKNLNRRSAWETTSTKSKTNDQPSTSTKGKG 204

Query: 113 KEVHGNKSKINPKGSSNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECPQRRNLTIQEKQ 172
           KEV   +  +  K    +      N Y+RP+LG CFRCGQTGHLSN CPQR+ + I E+ 
Sbjct: 205 KEVDNQEVAVERK-KEQTFKPSGQNSYSRPSLGKCFRCGQTGHLSNNCPQRKTIAIAEEG 264

Query: 173 EEFNKEENDS-DDIEYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPFQAHCTINGKICN 232
            + +++  ++ ++ E    D+G+ +SC +QRVL+ P  + N QRH  F+  CTING++C+
Sbjct: 265 GQTSEDSIEAEEETELIEADDGERVSCFIQRVLIMPKEEKNLQRHCLFKTRCTINGRVCD 324

Query: 233 VIVDSGSSENMVSKMLVSALKLKVDSHPSPDKVG 257
           VI+DSGSSEN V+K LV  L LK ++HP+P K+G
Sbjct: 325 VIIDSGSSENFVAKKLVIVLNLKAEAHPTPYKIG 357

[Close]

BLAST of CaUC10G186820 vs. NCBI nr
Match: XP_031741035.1 (uncharacterized protein LOC116403692 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.0e-31
Identity = 84/202 (41.58%), Postives = 127/202 (62.87%), Query Frame = 0


Query: 61  SENQHIARTGKRIPRVETSSQNRRQSQDT----SKGQIVASTS-NTKGKEVHGNKSKINP 120
           SE    A T + +  + + + NRR + +T    SK     STS   KGKE+   +  +  
Sbjct: 325 SEAISFAETVEEMIAIRSKNLNRRSAWETNSTKSKTNDQPSTSTKAKGKEIDNQEVAVER 384

Query: 121 KGSSNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECPQRRNLTIQEKQEEFNKEENDS-D 180
           K    +      N Y+RP+LG CFRCGQTGHLS+ CPQR+ + I E+  + +++  ++ +
Sbjct: 385 K-KEQTFKPSGQNSYSRPSLGKCFRCGQTGHLSDNCPQRKTIAIAEEGGQISEDSIEAEE 444

Query: 181 DIEYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPFQAHCTINGKICNVIVDSGSSENMV 240
           + E    D+G+ +SCV+QR+L+TP  + N QRH  F+  CTING++C+VI+DSGSSEN V
Sbjct: 445 ETELIEADDGERVSCVIQRLLITPKEEKNLQRHCLFKTRCTINGRVCDVIIDSGSSENFV 504

Query: 241 SKMLVSALKLKVDSHPSPDKVG 257
           +K LV+ L LK ++HP+P K+G
Sbjct: 505 AKKLVTVLNLKAEAHPNPYKIG 525

[Close]

BLAST of CaUC10G186820 vs. NCBI nr
Match: KAA0031954.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-31
Identity = 84/201 (41.79%), Postives = 123/201 (61.19%), Query Frame = 0


Query: 69  TGKRIPRVETSSQNRRQSQDTS---------KGQIVASTS-NTKGKEVHGNKSKINPKGS 128
           T + +  + T + +R+ + +TS         K     STS   KGKEV   +   + K  
Sbjct: 154 TVEEMINIRTKNMSRKSTWETSSSKNPNYFNKASDQPSTSLQGKGKEVDTQELN-SEKRK 213

Query: 129 SNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECPQRRNLTIQEKQEEFNKEENDSD---D 188
             +   K  N+Y  P+LG CFRCGQTGHLSN CPQ++ + + +++E+ +K EN  D   +
Sbjct: 214 ETANRSKSQNNYTHPSLGKCFRCGQTGHLSNTCPQQKTIALADEEED-SKSENSKDAEEE 273

Query: 189 IEYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPFQAHCTINGKICNVIVDSGSSENMVS 248
           +E    D G  +SC+LQRVLL P  + +PQRH+ F+  CTINGK+C+VI+DSGSSEN ++
Sbjct: 274 VELIEADNGDRVSCILQRVLLAPREERDPQRHSRFKTRCTINGKVCDVIIDSGSSENSIA 333

Query: 249 KMLVSALKLKVDSHPSPDKVG 257
           K LV+ L +K   HP+P K+G
Sbjct: 334 KKLVANLNMKAKPHPNPYKIG 352

[Close]

BLAST of CaUC10G186820 vs. NCBI nr
Match: KAA0047078.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK05079.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-30
Identity = 91/226 (40.27%), Postives = 130/226 (57.52%), Query Frame = 0


Query: 54  ARNNLAESENQHIAR--TGKRIPRVE-------------TSSQNRRQSQDTSKGQIVAST 113
           AR NL+E+E   IAR   G R    E              S     +  +  + +  +++
Sbjct: 311 ARINLSENEQHQIARFIGGLRFDIKEKIKLQPFRFLSEAISFAETVEEMNAIRTKNPSTS 370

Query: 114 SNTKGKEVH------GNKSKINPKGSSNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECP 173
           +  KGKEV         K ++  KG       K  N YNRP+LG CFRCGQ GH SN CP
Sbjct: 371 TQGKGKEVETQDLADDKKREVVNKG-------KVQNKYNRPSLGKCFRCGQPGHPSNTCP 430

Query: 174 QRRNLTIQEKQEEFNKEEND--SDDIEYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPF 233
           QR+ + + +K+E+   E ++   ++ +    D+G  +SCV+QRVLL P  +TNPQ H+ F
Sbjct: 431 QRKTIALADKEEDSASESSEELEEEAKLIEADDGHRVSCVIQRVLLAPKEETNPQCHSLF 490

Query: 234 QAHCTINGKICNVIVDSGSSENMVSKMLVSALKLKVDSHPSPDKVG 257
           +  CTINGK+C+VI+D+GSSEN V+K LV+AL LK + HP+P K+G
Sbjct: 491 KTRCTINGKVCDVIIDNGSSENFVAKKLVTALNLKAEPHPNPYKIG 529

[Close]

BLAST of CaUC10G186820 vs. NCBI nr
Match: KAA0059834.1 (uncharacterized protein E6C27_scaffold108G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-30
Identity = 88/217 (40.55%), Postives = 130/217 (59.91%), Query Frame = 0


Query: 53  TARNNLAESENQHIAR----TGKRIPRVETSSQNRRQS--QDTSKGQIVASTSNTKGKEV 112
           +AR NL E+E   IAR    T + +      S NR+ +   + SK Q  +S +N +    
Sbjct: 117 SARTNLGENEQHQIARFIGETVEEMMVAPLKSSNRKTTWKVNFSKKQSYSSRTNEQPSTS 176

Query: 113 HGNKSK-----INPKGSSNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECPQRRNLTIQE 172
            G KSK        K   N+   K  N Y RP+L  CFRCGQ+GHLSN CPQR  +++ +
Sbjct: 177 VGGKSKDVDTQDAAKKKDNTDKGKSQNTYTRPSLEKCFRCGQSGHLSNNCPQRETISLAD 236

Query: 173 KQEEFNKEEN--DSDDIEYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPFQAHCTINGK 232
           K+     E++  + ++ E+   D+G  +S V+QRVL+ P  +TNPQRH+ F+  CTIN +
Sbjct: 237 KESNSISEDDKEEEEEAEFIEADDGDRISYVIQRVLIAPKEETNPQRHSLFKTRCTINRR 296

Query: 233 ICNVIVDSGSSENMVSKMLVSALKLKVDSHPSPDKVG 257
           +C+VI+DSGSSEN V++ LV+ L LK + +P+P K+G
Sbjct: 297 VCDVIIDSGSSENFVARKLVTILNLKTNPYPNPYKIG 333

[Close]

BLAST of CaUC10G186820 vs. ExPASy TrEMBL
Match: A0A5A7SLA2 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00360 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.2e-31
Identity = 84/201 (41.79%), Postives = 123/201 (61.19%), Query Frame = 0


Query: 69  TGKRIPRVETSSQNRRQSQDTS---------KGQIVASTS-NTKGKEVHGNKSKINPKGS 128
           T + +  + T + +R+ + +TS         K     STS   KGKEV   +   + K  
Sbjct: 154 TVEEMINIRTKNMSRKSTWETSSSKNPNYFNKASDQPSTSLQGKGKEVDTQELN-SEKRK 213

Query: 129 SNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECPQRRNLTIQEKQEEFNKEENDSD---D 188
             +   K  N+Y  P+LG CFRCGQTGHLSN CPQ++ + + +++E+ +K EN  D   +
Sbjct: 214 ETANRSKSQNNYTHPSLGKCFRCGQTGHLSNTCPQQKTIALADEEED-SKSENSKDAEEE 273

Query: 189 IEYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPFQAHCTINGKICNVIVDSGSSENMVS 248
           +E    D G  +SC+LQRVLL P  + +PQRH+ F+  CTINGK+C+VI+DSGSSEN ++
Sbjct: 274 VELIEADNGDRVSCILQRVLLAPREERDPQRHSRFKTRCTINGKVCDVIIDSGSSENSIA 333

Query: 249 KMLVSALKLKVDSHPSPDKVG 257
           K LV+ L +K   HP+P K+G
Sbjct: 334 KKLVANLNMKAKPHPNPYKIG 352

[Close]

BLAST of CaUC10G186820 vs. ExPASy TrEMBL
Match: A0A5D3C3X9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00540 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 91/226 (40.27%), Postives = 130/226 (57.52%), Query Frame = 0


Query: 54  ARNNLAESENQHIAR--TGKRIPRVE-------------TSSQNRRQSQDTSKGQIVAST 113
           AR NL+E+E   IAR   G R    E              S     +  +  + +  +++
Sbjct: 311 ARINLSENEQHQIARFIGGLRFDIKEKIKLQPFRFLSEAISFAETVEEMNAIRTKNPSTS 370

Query: 114 SNTKGKEVH------GNKSKINPKGSSNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECP 173
           +  KGKEV         K ++  KG       K  N YNRP+LG CFRCGQ GH SN CP
Sbjct: 371 TQGKGKEVETQDLADDKKREVVNKG-------KVQNKYNRPSLGKCFRCGQPGHPSNTCP 430

Query: 174 QRRNLTIQEKQEEFNKEEND--SDDIEYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPF 233
           QR+ + + +K+E+   E ++   ++ +    D+G  +SCV+QRVLL P  +TNPQ H+ F
Sbjct: 431 QRKTIALADKEEDSASESSEELEEEAKLIEADDGHRVSCVIQRVLLAPKEETNPQCHSLF 490

Query: 234 QAHCTINGKICNVIVDSGSSENMVSKMLVSALKLKVDSHPSPDKVG 257
           +  CTINGK+C+VI+D+GSSEN V+K LV+AL LK + HP+P K+G
Sbjct: 491 KTRCTINGKVCDVIIDNGSSENFVAKKLVTALNLKAEPHPNPYKIG 529

[Close]

BLAST of CaUC10G186820 vs. ExPASy TrEMBL
Match: A0A5A7UXS4 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001170 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 88/217 (40.55%), Postives = 130/217 (59.91%), Query Frame = 0


Query: 53  TARNNLAESENQHIAR----TGKRIPRVETSSQNRRQS--QDTSKGQIVASTSNTKGKEV 112
           +AR NL E+E   IAR    T + +      S NR+ +   + SK Q  +S +N +    
Sbjct: 117 SARTNLGENEQHQIARFIGETVEEMMVAPLKSSNRKTTWKVNFSKKQSYSSRTNEQPSTS 176

Query: 113 HGNKSK-----INPKGSSNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECPQRRNLTIQE 172
            G KSK        K   N+   K  N Y RP+L  CFRCGQ+GHLSN CPQR  +++ +
Sbjct: 177 VGGKSKDVDTQDAAKKKDNTDKGKSQNTYTRPSLEKCFRCGQSGHLSNNCPQRETISLAD 236

Query: 173 KQEEFNKEEN--DSDDIEYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPFQAHCTINGK 232
           K+     E++  + ++ E+   D+G  +S V+QRVL+ P  +TNPQRH+ F+  CTIN +
Sbjct: 237 KESNSISEDDKEEEEEAEFIEADDGDRISYVIQRVLIAPKEETNPQRHSLFKTRCTINRR 296

Query: 233 ICNVIVDSGSSENMVSKMLVSALKLKVDSHPSPDKVG 257
           +C+VI+DSGSSEN V++ LV+ L LK + +P+P K+G
Sbjct: 297 VCDVIIDSGSSENFVARKLVTILNLKTNPYPNPYKIG 333

[Close]

BLAST of CaUC10G186820 vs. ExPASy TrEMBL
Match: A0A5D3DHT9 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001540 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 69/140 (49.29%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 119 SNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECPQRRNLTIQEKQEEFNKEEND--SDDI 178
           S+  + K  N+YNRP+LG CFRCGQ+GHLS  C QR+ + + +++E+   E ++   ++ 
Sbjct: 26  SSKTNGKVQNNYNRPSLGKCFRCGQSGHLSKTCSQRKTIALTDEEEDSASESSEKLEEEA 85

Query: 179 EYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPFQAHCTINGKICNVIVDSGSSENMVSK 238
           E    D+G  +SCV+QRVL+ P  +TNPQRH+ F+  CTINGK+C+VI+DS SSEN V+K
Sbjct: 86  ELIKVDDGDRVSCVIQRVLIAPKQETNPQRHSLFETRCTINGKVCDVIIDS-SSENFVAK 145

Query: 239 MLVSALKLKVDSHPSPDKVG 257
            LV+AL LK + H +P K+G
Sbjct: 146 KLVTALNLKAEPHLNPYKIG 164

[Close]

BLAST of CaUC10G186820 vs. ExPASy TrEMBL
Match: A0A5D3D0X3 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.2e-30
Identity = 79/200 (39.50%), Postives = 119/200 (59.50%), Query Frame = 0


Query: 66  IARTGKRIPRVETSSQNRRQSQDT--SKGQIVASTSNTKGKEVHGNKSKI-----NPKGS 125
           + +T + +  V   + NRR + +T  SK Q     ++ +      +K K        K  
Sbjct: 107 VGKTVEEMMIVRLKNSNRRVAWETNPSKKQSYGKKTDEQPSTSVVDKGKAIDIQETNKKK 166

Query: 126 SNSLHQKKPNHYNRPNLGTCFRCGQTGHLSNECPQRRNLTIQEKQEEFNKE--ENDSDDI 185
            + +  K  N+Y RP+LG CFRCG+  HLSN CPQR+ + + E ++ +  E    + ++ 
Sbjct: 167 KSVVRGKTQNNYTRPSLGKCFRCGEPDHLSNNCPQRKTIALAEDEDTYTSETDREEEEET 226

Query: 186 EYTNPDEGKELSCVLQRVLLTPITKTNPQRHAPFQAHCTINGKICNVIVDSGSSENMVSK 245
           E    D+   +SC++QRVL+TP  +TNPQRH  F+  CTINGK+C+VI++SGSSEN V++
Sbjct: 227 ELIEADDEDRISCIIQRVLITPKEETNPQRHNLFKTRCTINGKVCDVIINSGSSENFVAR 286

Query: 246 MLVSALKLKVDSHPSPDKVG 257
            LV+AL LK D HP P K+G
Sbjct: 287 KLVTALNLKTDPHPDPYKIG 306

The following BLAST results are available for this feature:

BLAST of CaUC10G186820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744062.1	8.3e-33	42.06	uncharacterized protein LOC116404773 [Cucumis sativus]	[more]
XP_031741035.1	2.0e-31	41.58	uncharacterized protein LOC116403692 [Cucumis sativus]	[more]
KAA0031954.1	4.5e-31	41.79	zf-CCHC domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0047078.1	2.9e-30	40.27	reverse transcriptase [Cucumis melo var. makuwa] >TYK05079.1 reverse transcripta...	[more]
KAA0059834.1	2.9e-30	40.55	uncharacterized protein E6C27_scaffold108G001170 [Cucumis melo var. makuwa]	[more]

BLAST of CaUC10G186820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC10G186820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLA2	2.2e-31	41.79	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C3X9	1.4e-30	40.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13...	[more]
A0A5A7UXS4	1.4e-30	40.55	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3DHT9	1.9e-30	49.29	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3D0X3	3.2e-30	39.50	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CaUC10G186820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 137..153 e-value: 9.1E-6 score: 35.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 136..153 e-value: 2.0E-7 score: 30.8
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 138..153 score: 11.004309
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 198..256 e-value: 4.3E-6 score: 28.4
None	No IPR available	GENE3D	4.10.60.10		coord: 130..161 e-value: 1.5E-8 score: 36.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..104
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 71..255
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 126..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G186820.1	CaUC10G186820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding