CaUC03G053910 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G053910
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr03: 4421551 .. 4421832 (-)
RNA-Seq ExpressionCaUC03G053910
SyntenyCaUC03G053910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATGGTGAAGACGCCGAAAAATAGAATGGTATGGACGATAATAGCCTTGCCATTGGTGGTGAAGCTTCCGAATTCAACCATGCGAGAATTTCCGGGCAGCTGGAAAAGCAGCCCCGGCGAGAGGAGAATGAAGAGCAGTAATCCGAACAGAACCGGCGCCCAATCCAACATTGTTTATCGCTCCGGCTGCGGCTCCGGCACCGGCGACGACGAGTTCAACAAGCTTCAGAAGGAGGTGGGTGGTTTGTATTATCATACTTTTCCAGTCTATTTATAG

mRNA sequence

ATGAGAATGGTGAAGACGCCGAAAAATAGAATGGTATGGACGATAATAGCCTTGCCATTGGTGGTGAAGCTTCCGAATTCAACCATGCGAGAATTTCCGGGCAGCTGGAAAAGCAGCCCCGGCGAGAGGAGAATGAAGAGCAGTAATCCGAACAGAACCGGCGCCCAATCCAACATTGTTTATCGCTCCGGCTGCGGCTCCGGCACCGGCGACGACGAGTTCAACAAGCTTCAGAAGGAGGTGGGTGGTTTGTATTATCATACTTTTCCAGTCTATTTATAG

Coding sequence (CDS)

ATGAGAATGGTGAAGACGCCGAAAAATAGAATGGTATGGACGATAATAGCCTTGCCATTGGTGGTGAAGCTTCCGAATTCAACCATGCGAGAATTTCCGGGCAGCTGGAAAAGCAGCCCCGGCGAGAGGAGAATGAAGAGCAGTAATCCGAACAGAACCGGCGCCCAATCCAACATTGTTTATCGCTCCGGCTGCGGCTCCGGCACCGGCGACGACGAGTTCAACAAGCTTCAGAAGGAGGTGGGTGGTTTGTATTATCATACTTTTCCAGTCTATTTATAG

Protein sequence

MRMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIVYRSGCGSGTGDDEFNKLQKEVGGLYYHTFPVYL
Homology
BLAST of CaUC03G053910 vs. NCBI nr
Match: KAG6584156.1 (hypothetical protein SDJN03_20088, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-21
Identity = 57/70 (81.43%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1  MRMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIV 60
          MRMVK PK RMVWTI+ALPLVVKLPNSTMR FPGSWKSSPGERRMK SNPNRTGAQSNI 
Sbjct: 6  MRMVKMPKKRMVWTIMALPLVVKLPNSTMRAFPGSWKSSPGERRMKRSNPNRTGAQSNIE 65

Query: 61 YRSGCGSGTG 71
            +  G G G
Sbjct: 66 SPAPVGEGGG 75

BLAST of CaUC03G053910 vs. NCBI nr
Match: PON95762.1 (hypothetical protein TorRG33x02_085910 [Trema orientale])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1  MRMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIV 60
          MRMVKTPK  MVWT +ALPLVVKLPNST R +PGSWK  PGE  MKSS+P RTGAQSN++
Sbjct: 8  MRMVKTPKKIMVWTKMALPLVVKLPNSTGRVWPGSWKRRPGESSMKSSHPIRTGAQSNMI 67

Query: 61 YR 63
           R
Sbjct: 68 DR 69

BLAST of CaUC03G053910 vs. NCBI nr
Match: PON77275.1 (hypothetical protein PanWU01x14_028940 [Parasponia andersonii])

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 2  RMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIV 61
          RMVKTPK  MVWT +ALPLVVKLPNST R +PGSWK  PGE  MKSS+P RTGAQSN++
Sbjct: 9  RMVKTPKKMMVWTKMALPLVVKLPNSTGRVWPGSWKRRPGESSMKSSHPIRTGAQSNMI 67

BLAST of CaUC03G053910 vs. NCBI nr
Match: OMO84140.1 (hypothetical protein CCACVL1_10983 [Corchorus capsularis])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 16 IALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIV 61
          +A PLV KLPNST+R FPGSWK  PGER MKS++P + GAQSNI+
Sbjct: 1  MAFPLVWKLPNSTVRLFPGSWKRRPGERSMKSNSPTKIGAQSNII 45

BLAST of CaUC03G053910 vs. NCBI nr
Match: MBA0685522.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-07
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 1  MRMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKS 48
          MR+VK PKNR VW  +A P V KLPNST+R FPGSWK  PG+  M S
Sbjct: 8  MRIVKRPKNRRVWITMAFPFVWKLPNSTVRLFPGSWKRRPGDSSMNS 54

BLAST of CaUC03G053910 vs. ExPASy TrEMBL
Match: A0A2P5FD82 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_085910 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.2e-15
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1  MRMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIV 60
          MRMVKTPK  MVWT +ALPLVVKLPNST R +PGSWK  PGE  MKSS+P RTGAQSN++
Sbjct: 8  MRMVKTPKKIMVWTKMALPLVVKLPNSTGRVWPGSWKRRPGESSMKSSHPIRTGAQSNMI 67

Query: 61 YR 63
           R
Sbjct: 68 DR 69

BLAST of CaUC03G053910 vs. ExPASy TrEMBL
Match: A0A2P5DVF5 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_028940 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.5e-14
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 2  RMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIV 61
          RMVKTPK  MVWT +ALPLVVKLPNST R +PGSWK  PGE  MKSS+P RTGAQSN++
Sbjct: 9  RMVKTPKKMMVWTKMALPLVVKLPNSTGRVWPGSWKRRPGESSMKSSHPIRTGAQSNMI 67

BLAST of CaUC03G053910 vs. ExPASy TrEMBL
Match: A0A1R3INM5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_10983 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-08
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 16 IALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIV 61
          +A PLV KLPNST+R FPGSWK  PGER MKS++P + GAQSNI+
Sbjct: 1  MAFPLVWKLPNSTVRLFPGSWKRRPGERSMKSNSPTKIGAQSNII 45

BLAST of CaUC03G053910 vs. ExPASy TrEMBL
Match: A0A7J8XEE1 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_013178 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.0e-07
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 1  MRMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKS 48
          MR+VK PKNR VW  +A P V KLPNST+R FPGSWK  PG+  M S
Sbjct: 8  MRIVKRPKNRRVWITMAFPFVWKLPNSTVRLFPGSWKRRPGDSSMNS 54

BLAST of CaUC03G053910 vs. ExPASy TrEMBL
Match: A0A7J8M4G5 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_016540 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.8e-07
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 1  MRMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKS 48
          MR+VK PK R VW  +ALP V KLPNST+R FPGSWK  PG+  M S
Sbjct: 8  MRIVKRPKKRRVWITMALPFVWKLPNSTVRLFPGSWKRRPGDSSMNS 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6584156.12.6e-2181.43hypothetical protein SDJN03_20088, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON95762.11.1e-1474.19hypothetical protein TorRG33x02_085910 [Trema orientale][more]
PON77275.13.1e-1474.58hypothetical protein PanWU01x14_028940 [Parasponia andersonii][more]
OMO84140.11.3e-0768.89hypothetical protein CCACVL1_10983 [Corchorus capsularis][more]
MBA0685522.18.2e-0763.83hypothetical protein [Gossypium aridum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5FD825.2e-1574.19Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_085910 PE=4 SV... [more]
A0A2P5DVF51.5e-1474.58Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_028940 PE... [more]
A0A1R3INM56.2e-0868.89Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_10983 PE=4 ... [more]
A0A7J8XEE14.0e-0763.83Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_013178 PE=4 SV=1[more]
A0A7J8M4G56.8e-0763.83Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_016540 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G053910.1CaUC03G053910.1mRNA