CcUC06G115410 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G115410
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC113729324
Location	CicolChr06: 6797258 .. 6799113 (-)
RNA-Seq Expression	CcUC06G115410
Synteny	CcUC06G115410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCACGTGCGACTGAAGGAGGGAAAACATAGGGTAGTTGGATGTTATCTACTGAAGACCTTTTTAATAAAGGTCCTCCGTTATTCATGATGCCACGTGCCGGTCAAGCAGTGGATGGTCTTTTCATTGCACCACTCCCCTTTTGTTGTTTTTCAACTTTGGAATTTCTCATTTTACTTTTAAGTCCTCACTTTTGAATACATTTTAATAATTATAATAAAATATTTTAGTGTTTTTTTTTTTAAATGGTTTTGAAAATATATGATTAGTCAGGTGATATTTATTTTGATTGGGAAAAATGTGAATTTTCTTTTGCTAAAGTACAAAAAGTAGATTTGAATTTACTTATAATGTTTTTAATTCATGAAGAAAATTTTCATTTTATACATGAGGAATTCAATAATTAAGTTTTGTTGTTCGAACGTTAAAAAGAAATTTACTTGCATTATATGTTTAAGTCATTGGTCATTTATATGTTTAAGGCATTGCTTATTTTTATTGTATTACATTAAATTTTGTTTTTAGGGGAAAGATCTAAAATCCTAGATAATAGATAATATCGTTTTTAGATAGAATAATTGTCATATTATTTTATTAATATAAATTATTACTTCTATTTGTAGTAGGAAAAAACTTTTGTTTTGAAAAATTATTATAAATAGAAAAAATATCAAACTATTTACAAATATTTTGACTAATTTGCTATATTTGGAAATAATCTTTTTAGTAAATACTAAAATTTTAACCACACACTTCTCGATCATTATCACATGCTTTATACCGGCTAAGGTTCCATTTTTATATTAGGAAAAAAACTAATACTCTTAAATTAATTATTTATAAAAAATCGAGTCAATTTGACTAATTAAACCAGGACTCAAGTTCCTGATTGAGGAATGAGATTTGCTTTATAAAGGCTTCCCCTAATTTAGATTACTTCAGAATTTGGATTGATTCTCTCCTATGTGATTTTGGAGTTGGAGTTGTTCTAATGGCCCTGTGGTTGGTGCTGTTTCGGGCTCTCCCACCCCTTTCCCGTTTGTGTACTTCGCCCGAAGGATGTTGGGAGGCCGTAAATTCATCTCTAAAGGTCTTTATATGAGCCTTCTAGAAATCGAAGCCATTCTAGAGGGGCTGAGAGTGCTTGTTGGGGCGTGGTCGGGTCCAATCACCTGTTGTTGGAGGTGAAGTTTGATGCTCTGGAGGTCATCAGTTTGGGACCATGACGGGTGTGCTATTTTGGGAGGCTGTAAATTCATCTCTAAAGGTCTTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAAGGGCTGAGAGTGCTTGTTGGGGCGTGGTCGGGTCCAATCACCTGTTGTTGGAGGTGAAGTTTGATGCTCTGGAGGTCATCAGTTTGGGACCATGACGGGTGTGCTATTTTGGGAGGCTGTAAATTCATCTCTAAAGGTCTTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAGGGGCTGAGAGTGCTTGTTGGGGCGTGGTCGGGTCCAATCACCTGTTGTTGGAGGTGAAGTTTGATGCTCTGGAGGTCATCAGTTTGGGACCATGACGGGTGTGCTATTTTGGGAGGCTGTAAAAATTCATCTCTAAAGGTCTTTATATGAGCCTTCTAGAAGTCGAAGCCATTCTAGAGGGGCTGAGAGTTCTTGTTGGGGCGTGGTCAGGTCCTATAGAAGGGTGGGTTGGTTATATACTCTTATGCGCGTTCCTTTTTCGAACCTTTTGGTATGTATTGCCCTCTAACTATAGATCAGATCCACCGGACGAGGTGAAGTCTGATGCTCCAGAAGTCATCAAGCTTCTCAATAGGGAGACGTTTTAA

mRNA sequence

ATGACCCACGCTTCCCCTAATTTAGATTACTTCAGAATTTGGATTGATTCTCTCCTATGTGATTTTGGAGTTGGAGTTGTTCTAATGGCCCTGTGGTTGGTGCTGTTTCGGGCTCTCCCACCCCTTTCCCAAGTCGAAGCCATTCTAGAGGGGCTGAGAGTTCTTGTTGGGGCGTGGTCAGGTCCTATAGAAGGGTGGGTTGGTTATATACTCTTATGCGCGTTCCTTTTTCGAACCTTTTGGTATGTATTGCCCTCTAACTATAGATCAGATCCACCGGACGAGGTGAAGTCTGATGCTCCAGAAGTCATCAAGCTTCTCAATAGGGAGACGTTTTAA

Coding sequence (CDS)

ATGACCCACGCTTCCCCTAATTTAGATTACTTCAGAATTTGGATTGATTCTCTCCTATGTGATTTTGGAGTTGGAGTTGTTCTAATGGCCCTGTGGTTGGTGCTGTTTCGGGCTCTCCCACCCCTTTCCCAAGTCGAAGCCATTCTAGAGGGGCTGAGAGTTCTTGTTGGGGCGTGGTCAGGTCCTATAGAAGGGTGGGTTGGTTATATACTCTTATGCGCGTTCCTTTTTCGAACCTTTTGGTATGTATTGCCCTCTAACTATAGATCAGATCCACCGGACGAGGTGAAGTCTGATGCTCCAGAAGTCATCAAGCTTCTCAATAGGGAGACGTTTTAA

Protein sequence

MTHASPNLDYFRIWIDSLLCDFGVGVVLMALWLVLFRALPPLSQVEAILEGLRVLVGAWSGPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF

Homology

[Close]

BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_030925283.1 (uncharacterized protein LOC115952312 [Quercus lobata])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 37  RALPPLSQVEAILEGLRVLVGAWSGPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEV 96
           + LP L Q+ A   GL  LV  ++   EGWVGYILLCAFL RTFWYVLP NYRSDPPDE 
Sbjct: 61  KELPDLRQLRA-FRGL--LVIHYTHYTEGWVGYILLCAFLLRTFWYVLPPNYRSDPPDEK 120

Query: 97  KSDAPEVIKLLNRETF 113
            + A     LL+R T+
Sbjct: 121 LNSA----LLLSRRTY 129

[Close]

BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_027184067.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113782373 [Coffea eugenioides])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGWVGYILLCAFL +TFWYVLP NYRSDPPDE ++ A     LL+R T+
Sbjct: 40  GYAEGWVGYILLCAFLLQTFWYVLPPNYRSDPPDEKRNSA----LLLSRRTY 87

[Close]

BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_042491226.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC122071023 [Macadamia integrifolia])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGWVGYILLCAFL RTFWYVLP NYRSDPPDE  + A     LL+R T+
Sbjct: 81  GYTEGWVGYILLCAFLLRTFWYVLPPNYRSDPPDEKLNSA----LLLSRRTY 128

[Close]

BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_027109433.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 [Coffea arabica])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGWVGYILLCAFL +TFWYVLP NYRSDPPDE ++ A     LL+R T+
Sbjct: 157 GYAEGWVGYILLCAFLLQTFWYVLPPNYRSDPPDEKQNSA----LLLSRRTY 204

[Close]

BLAST of CcUC06G115410 vs. NCBI nr
Match: XP_010646950.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100853704, partial [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 7.3e-10
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDA 101
           G  EGWVGYILLCAFL RTFWYVLP NYRSDPPDE  + A
Sbjct: 2   GYTEGWVGYILLCAFLLRTFWYVLPPNYRSDPPDEKLNSA 41

[Close]

BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A6P6W266 (LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 OS=Coffea arabica OX=13443 GN=LOC113729324 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.2e-11
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 61  GPIEGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGWVGYILLCAFL +TFWYVLP NYRSDPPDE ++ A     LL+R T+
Sbjct: 157 GYAEGWVGYILLCAFLLQTFWYVLPPNYRSDPPDEKQNSA----LLLSRRTY 204

[Close]

BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A6P8BX57 (LOW QUALITY PROTEIN: uncharacterized protein LOC116190061 OS=Punica granatum OX=22663 GN=LOC116190061 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 64  EGWVGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           EGWVGYILLCAF  RTFWYVLP NYRSDPP+E    A     LL+R T+
Sbjct: 5   EGWVGYILLCAFFLRTFWYVLPPNYRSDPPEEKLHSA----LLLSRRTY 49

[Close]

BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A5D2CW41 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D04G110200v1 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 61  GPIEGWVGYI--LLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           G  EGW GYI  LLCAF  RTFWYVLP NYRSDPPDE  +     + LL+R+T+
Sbjct: 7   GYTEGWFGYILLLLCAFFLRTFWYVLPPNYRSDPPDEKLNS----VLLLSRQTY 56

[Close]

BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A0D2U4T9 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G212600 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.7e-08
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 60  SGPIEGWVGYILLC--AFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           +G  EGW GYILL   AF  RTFWYVLP NYRSDPPDE  + A    +LL+R T+
Sbjct: 6   AGYTEGWFGYILLLLYAFFLRTFWYVLPPNYRSDPPDEKLNSA----QLLSRRTY 56

[Close]

BLAST of CcUC06G115410 vs. ExPASy TrEMBL
Match: A0A1S3XDI4 (uncharacterized protein LOC107763905 OS=Nicotiana tabacum OX=4097 GN=LOC107763905 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 67  VGYILLCAFLFRTFWYVLPSNYRSDPPDEVKSDAPEVIKLLNRETF 113
           VGYILLCAFL RTFWYVLP NYRSDPPD+  + A     LL+R T+
Sbjct: 3   VGYILLCAFLLRTFWYVLPPNYRSDPPDKKLNSA----LLLSRRTY 44

The following BLAST results are available for this feature:

BLAST of CcUC06G115410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030925283.1	1.7e-11	57.89	uncharacterized protein LOC115952312 [Quercus lobata]	[more]
XP_027184067.1	1.1e-10	67.31	LOW QUALITY PROTEIN: uncharacterized protein LOC113782373 [Coffea eugenioides]	[more]
XP_042491226.1	1.1e-10	69.23	LOW QUALITY PROTEIN: uncharacterized protein LOC122071023 [Macadamia integrifoli...	[more]
XP_027109433.1	1.5e-10	67.31	LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 [Coffea arabica]	[more]
XP_010646950.1	7.3e-10	80.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100853704, partial [V...	[more]

BLAST of CcUC06G115410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G115410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6W266	7.2e-11	67.31	LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 OS=Coffea arabica OX=1...	[more]
A0A6P8BX57	1.8e-09	67.35	LOW QUALITY PROTEIN: uncharacterized protein LOC116190061 OS=Punica granatum OX=...	[more]
A0A5D2CW41	1.5e-08	61.11	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D04G110200v1 PE=...	[more]
A0A0D2U4T9	9.7e-08	60.00	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G212600 PE=4 ...	[more]
A0A1S3XDI4	1.3e-07	67.39	uncharacterized protein LOC107763905 OS=Nicotiana tabacum OX=4097 GN=LOC10776390...	[more]

BLAST of CcUC06G115410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G115410.1	CcUC06G115410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane