Sed0005262 (gene) Chayote v1

Overview


Name	Sed0005262
Type	gene
Organism	Sechium edule (Chayote v1)
Description	mitochondrial import receptor subunit TOM7-1-like
Location	LG12: 32009895 .. 32011816 (-)
RNA-Seq Expression	Sed0005262
Synteny	Sed0005262

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGAAGGTTTCTCTGAAAAGCAAGGGCAAAAGCGCCAAGGGCTCATCAAAGTCATCTGATGAGAAATCCGCAACTCAAGCCTTCAAGGAATGGACCACTTGGGCGGTGAAGAAAGCCAAGGTCATCACCCATTACGGCTTCATTCCTCTCGTCATCGTCATCGGTATGAACTCTGAGCCAAAGCCTCACCTCTCCCAACTTTTCAGCCCCGTCTGATTTGATCCGTTTCCTCTCGTTTTTATGATGGATATGTGCCTTTTTCATCGATTCACGACTTGGATTTCTGGATTTTAGGGATTTGTTAGCGTATAGATTTTAGTTGGGTTTGGGTTTGATATTGCGCTGCTTATGCTTGGAATGATTCAACTAAAACAGACTTGTAATAATTTGGGAGAATTTAATTTGAGTATTTGATTATGTTGTTGCCGTGGGTTTGATTTTTTATGCCGTTCGATTTCCGAAATTTGAATAGTTGAATGCTGTTTTAGGGTTTATTTGCACTATCTGATCCTTTAAGGCTAGGGGAAACTGAATGATAGTATGAGGATCATGAGTGAAGCACTACGTGGGGTTAGCATTTTGTGGTGGCTATATTTTTCCTACCTTCTTTCTAAATGCTAACTGATCTAGGCACTATTTAATATTATTTTTTTTATATTCGTGAGTGTGTGGCCCGACTTATGCGCATCTTAACTATTCTCACGGGTCGTACTCTATAATATTTTGGAGGTCAAGAAAATCCATAAAAAAATAATTCATAAGTAGGCGGCCATCATGTATTGAGTCTCTGAGACCCTTTTTGACTTATCTCTATGATGATTTATTTAGTGTTATGGCCACGCCATGATGATTTTCAATTATTATGGGACAACGTCTACTATATTTGGTTGTGAAGTGTTGGTTTATGGTTTATATAATTAAAGTTTCCTCAATTCATTAGCTTAGGCTTTTGGATTGATTTGTGGTTTAACATAATTCAACATAGTATTAGAGCAGGAGATCATGAGTTCGAATCCCGGCCAAGTCGTTTCAATTAAAATTAAATTTCATTTGTAGGGCTGTTCTCAAATTTCAAATCCCACAAGTGAGGGGGAGTGTTGGTTGATATAATTAAACTTACCCCAATCCATTAACTTAGGCTTTTAGATTGATTGGTGGTTTAACATAATTCAACATAAAGGTAACTCATTATTCTTAGGTGAGTGTCACAACTTCTTTTAAGTATTTTATGATCTAGAAAGTCTTTATTAGACACAACTAAGGTTTAGTAGGTAAAATGTTTCCTTTAAATTGTGATCATGTCGAAACTCTCCTCAACCCAACAAGTGTTGTCTTGCTTATGTCAATGTTGGGTTGTTGTCATTTTTCTATTATATGCAGTTTACACTGCCCTCTATATGTTTACTCTTTCTCTGATTCATAACAGAAACATTTCTGTAGCCAGGGTAGGTTTGTCTTTAACTGGGGTTTTTAATGTTTGTTAATTGGACTTTACCTCTGTCATCTCTTGAGTTGTTGTGAGCTCATACATGCCTTACTCTAGAGCTGTATGTCTCTTGTTGTTGGGGATTCCAGGACCGCCTGTAGATAGATATGGTGTATTGTATAAAGTGAAATCTGAATGTAGTTATAAAATGCCCAACCCAAGAATTGAGCTTTGTTTTAGTAGTTCTTGACTCAACTTGGCTTCTTCATTTCATCTCCACAGGATTTTGAGTTCACCTCATTTTTTGTTGGCTGTTCATAATTCAATTATTGGGATCCTAAGGGGCAGCTTTGGTTAGTAGAGACTCAAAATCTCAAGGTATTCTGGAAGTCTCATGTTCGAAACTCACCAGCGAACTTAATTGTAAAATTCTTTGTTGTCTCTTGAGTTTGGGCATTGGAACAAAGTGGATGCCTCCAATACATTGGAG

mRNA sequence

ATGGCGTCGAAGGTTTCTCTGAAAAGCAAGGGCAAAAGCGCCAAGGGCTCATCAAAGTCATCTGATGAGAAATCCGCAACTCAAGCCTTCAAGGAATGGACCACTTGGGCGGTGAAGAAAGCCAAGGTCATCACCCATTACGGCTTCATTCCTCTCGTCATCGTCATCGGATTTTGAGTTCACCTCATTTTTTGTTGGCTGTTCATAATTCAATTATTGGGATCCTAAGGGGCAGCTTTGGTTAGTAGAGACTCAAAATCTCAAGGTATTCTGGAAGTCTCATGTTCGAAACTCACCAGCGAACTTAATTGTAAAATTCTTTGTTGTCTCTTGAGTTTGGGCATTGGAACAAAGTGGATGCCTCCAATACATTGGAG

Coding sequence (CDS)

ATGGCGTCGAAGGTTTCTCTGAAAAGCAAGGGCAAAAGCGCCAAGGGCTCATCAAAGTCATCTGATGAGAAATCCGCAACTCAAGCCTTCAAGGAATGGACCACTTGGGCGGTGAAGAAAGCCAAGGTCATCACCCATTACGGCTTCATTCCTCTCGTCATCGTCATCGGATTTTGA

Protein sequence

MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIGF

Homology

[Close]

BLAST of Sed0005262 vs. NCBI nr
Match: XP_038879584.1 (mitochondrial import receptor subunit TOM7-1-like [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVSL+SKGKS+KGSSKSS+EKSATQ+FKEWTTWAVKKAKVITHYGFIPLVI+IG
Sbjct: 1  MASKVSLRSKGKSSKGSSKSSEEKSATQSFKEWTTWAVKKAKVITHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. NCBI nr
Match: XP_022134881.1 (mitochondrial import receptor subunit TOM7-1-like [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVS KSKGKS+KGSSKSS+EKSATQAFKEW+TWAVKKAKVITHYGFIPLVI+IG
Sbjct: 1  MASKVSFKSKGKSSKGSSKSSEEKSATQAFKEWSTWAVKKAKVITHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. NCBI nr
Match: XP_008455820.1 (PREDICTED: mitochondrial import receptor subunit TOM7-1-like [Cucumis melo] >TYJ98347.1 mitochondrial import receptor subunit TOM7-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVSL+SKGKS+K SSKSS+EKSATQAFKEWTTWAVKKAKVITHYGFIPLVI+IG
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. NCBI nr
Match: XP_022921829.1 (mitochondrial import receptor subunit TOM7-1-like [Cucurbita moschata] >XP_022988536.1 mitochondrial import receptor subunit TOM7-1-like [Cucurbita maxima] >XP_023516449.1 mitochondrial import receptor subunit TOM7-1-like [Cucurbita pepo subsp. pepo] >KAG6589655.1 Mitochondrial import receptor subunit TOM7-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023343.1 Mitochondrial import receptor subunit TOM7-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 3.2e-17
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVSL+SKGKS+KGSSKSS++KS TQAFKEWTTWAVKKAKVITHYGFIPLVI+IG
Sbjct: 1  MASKVSLRSKGKSSKGSSKSSEDKSTTQAFKEWTTWAVKKAKVITHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. NCBI nr
Match: XP_004151870.1 (mitochondrial import receptor subunit TOM7-1 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 3.2e-17
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVSL+SKGKS+K SSKSS+EKSATQAFKEWTTWAVKKAKV+THYGFIPLVI+IG
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. ExPASy Swiss-Prot
Match: Q9ASY8 (Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana OX=3702 GN=TOM7-1 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-10
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 1  MASKVSL---KSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          M S +SL   K KGK +KG+S SSD+KS     KEWT W++KKAKV+THYGFIPLVI +G
Sbjct: 1  MESTISLKVNKGKGKGSKGAS-SSDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVG 59

[Close]

BLAST of Sed0005262 vs. ExPASy Swiss-Prot
Match: Q3ECI7 (Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana OX=3702 GN=TOM7-2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.7e-09
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MASKVSLKSKGKS--AKGSSKSSDEKSAT--QAFKEWTTWAVKKAKVITHYGFIPLVIVI 58
          MA+K +LK KGK+  +KGSS SS   +++  + FK+WT W+++KAKV THYGFIPL+I+I
Sbjct: 1  MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIII 60

[Close]

BLAST of Sed0005262 vs. ExPASy Swiss-Prot
Match: O82067 (Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum OX=4113 GN=TOM7-1 PE=3 SV=3)

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 7  LKSKGKSAKGSSKSSDEKSAT----QAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          LK KGK+ K ++ + ++  A     +  KEW TW  KKAKVITHYGFIPLVI+IG
Sbjct: 2  LKPKGKNTKKAAAADEDDGAVAVVGKFVKEWGTWTAKKAKVITHYGFIPLVIIIG 56

[Close]

BLAST of Sed0005262 vs. ExPASy TrEMBL
Match: A0A6J1BZ09 (mitochondrial import receptor subunit TOM7-1-like OS=Momordica charantia OX=3673 GN=LOC111007032 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.1e-18
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVS KSKGKS+KGSSKSS+EKSATQAFKEW+TWAVKKAKVITHYGFIPLVI+IG
Sbjct: 1  MASKVSFKSKGKSSKGSSKSSEEKSATQAFKEWSTWAVKKAKVITHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. ExPASy TrEMBL
Match: A0A5D3BGU9 (Mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00780 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVSL+SKGKS+K SSKSS+EKSATQAFKEWTTWAVKKAKVITHYGFIPLVI+IG
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. ExPASy TrEMBL
Match: A0A1S3C1D2 (mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo OX=3656 GN=LOC103495918 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVSL+SKGKS+K SSKSS+EKSATQAFKEWTTWAVKKAKVITHYGFIPLVI+IG
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. ExPASy TrEMBL
Match: A0A6J1JHG5 (mitochondrial import receptor subunit TOM7-1-like OS=Cucurbita maxima OX=3661 GN=LOC111485747 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVSL+SKGKS+KGSSKSS++KS TQAFKEWTTWAVKKAKVITHYGFIPLVI+IG
Sbjct: 1  MASKVSLRSKGKSSKGSSKSSEDKSTTQAFKEWTTWAVKKAKVITHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. ExPASy TrEMBL
Match: A0A0A0LN99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G424720 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MASKVSLKSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          MASKVSL+SKGKS+K SSKSS+EKSATQAFKEWTTWAVKKAKV+THYGFIPLVI+IG
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIG 57

[Close]

BLAST of Sed0005262 vs. TAIR 10
Match: AT5G41685.1 (Mitochondrial outer membrane translocase complex, subunit Tom7 )

HSP 1 Score: 64.3 bits (155), Expect = 3.7e-11
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 1  MASKVSL---KSKGKSAKGSSKSSDEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIVIG 58
          M S +SL   K KGK +KG+S SSD+KS     KEWT W++KKAKV+THYGFIPLVI +G
Sbjct: 1  MESTISLKVNKGKGKGSKGAS-SSDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVG 59

[Close]

BLAST of Sed0005262 vs. TAIR 10
Match: AT1G64220.1 (translocase of outer membrane 7 kDa subunit 2 )

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-10
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MASKVSLKSKGKS--AKGSSKSSDEKSAT--QAFKEWTTWAVKKAKVITHYGFIPLVIVI 58
          MA+K +LK KGK+  +KGSS SS   +++  + FK+WT W+++KAKV THYGFIPL+I+I
Sbjct: 1  MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIII 60

The following BLAST results are available for this feature:

BLAST of Sed0005262 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879584.1	1.1e-17	91.23	mitochondrial import receptor subunit TOM7-1-like [Benincasa hispida]	[more]
XP_022134881.1	1.9e-17	91.23	mitochondrial import receptor subunit TOM7-1-like [Momordica charantia]	[more]
XP_008455820.1	2.5e-17	91.23	PREDICTED: mitochondrial import receptor subunit TOM7-1-like [Cucumis melo] >TYJ...	[more]
XP_022921829.1	3.2e-17	89.47	mitochondrial import receptor subunit TOM7-1-like [Cucurbita moschata] >XP_02298...	[more]
XP_004151870.1	3.2e-17	89.47	mitochondrial import receptor subunit TOM7-1 [Cucumis sativus]	[more]

BLAST of Sed0005262 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ASY8	5.2e-10	61.67	Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q3ECI7	5.7e-09	55.74	Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O82067	5.3e-07	54.55	Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum OX=4113 GN=TOM...	[more]

BLAST of Sed0005262 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZ09	9.1e-18	91.23	mitochondrial import receptor subunit TOM7-1-like OS=Momordica charantia OX=3673...	[more]
A0A5D3BGU9	1.2e-17	91.23	Mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3C1D2	1.2e-17	91.23	mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1JHG5	1.6e-17	89.47	mitochondrial import receptor subunit TOM7-1-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A0A0LN99	1.6e-17	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G424720 PE=3 SV=1	[more]

BLAST of Sed0005262 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41685.1	3.7e-11	61.67	Mitochondrial outer membrane translocase complex, subunit Tom7	[more]
AT1G64220.1	4.0e-10	55.74	translocase of outer membrane 7 kDa subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012621	Mitochondrial import receptor subunit TOM7	PFAM	PF08038	Tom7	coord: 31..58 e-value: 1.8E-11 score: 43.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	PANTHER	PTHR34944	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM7	coord: 1..57
None	No IPR available	PANTHER	PTHR34944:SF2	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM7	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005262.1	Sed0005262.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex