CcUC02G038020.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G038020.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 33472824 .. 33473400 (-)
Sequence length	393
RNA-Seq Expression	CcUC02G038020.1
Synteny	CcUC02G038020.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGTCATAATTTAACCGACGAACGATATTCATATTCCAGTAAAAGCCTCAAAGCAAAAGACTTGGACAGGAAAATTCACTGGGAATCATCATTTCGGAGCTTGGGTTAATTGGGTTTGTCGAGACGGAAAGTAAGTGGTTTCTCAGAGGAAGAAGGAATTCGACAGGTAAATTTCTCGAAAGACATTGTAAAACCTTTTGAGTTTGGTTGTTATTAGAGTGATTAAAACTTAGAATTGTTGGTTCATAGTTATGATTGCCATGATTATACACAAAAAAGCAAAACCCAATGTGCTCAATAACTCAATTCATGTCATAGGATTCTTTATTCCAGCTACCCAAGTAATCAAACCCTTCAAAATTTTCCCCAATCCCCTCCCTCCAAAACTGGTCTTTTTGATTGGTCGTTTTTACTGTATTGTTGGCATTTGAATTGGCTGTATTTCAGTGGGCTAGGATGCCCATTAGAGGCTATGAATTGTGGAGAGTTGAAGGAATGCCCACCAAGTGTTCGATAAAAGTCCCCAAAGAACTTTTTAGTGTAGGAAAAGGGTTGTCTGTTGCCAATGCGTAG

mRNA sequence

ATGGTACCTCAAAGCAAAAGACTTGGACAGGAAAATTCACTGGGAATCATCATTTCGGAGCTTGGGTTAATTGGGTTTGTCGAGACGGAAAGTAAGTGGTTTCTCAGAGGAAGAAGGAATTCGACAGTTATGATTGCCATGATTATACACAAAAAAGCAAAACCCAATGTGCTCAATAACTCAATTCATGTCATAGGATTCTTTATTCCAGCTACCCAAGTAATCAAACCCTTCAAAATTTTCCCCAATCCCCTCCCTCCAAAACTGTGGGCTAGGATGCCCATTAGAGGCTATGAATTGTGGAGAGTTGAAGGAATGCCCACCAAGTGTTCGATAAAAGTCCCCAAAGAACTTTTTAGTGTAGGAAAAGGGTTGTCTGTTGCCAATGCGTAG

Coding sequence (CDS)

ATGGTACCTCAAAGCAAAAGACTTGGACAGGAAAATTCACTGGGAATCATCATTTCGGAGCTTGGGTTAATTGGGTTTGTCGAGACGGAAAGTAAGTGGTTTCTCAGAGGAAGAAGGAATTCGACAGTTATGATTGCCATGATTATACACAAAAAAGCAAAACCCAATGTGCTCAATAACTCAATTCATGTCATAGGATTCTTTATTCCAGCTACCCAAGTAATCAAACCCTTCAAAATTTTCCCCAATCCCCTCCCTCCAAAACTGTGGGCTAGGATGCCCATTAGAGGCTATGAATTGTGGAGAGTTGAAGGAATGCCCACCAAGTGTTCGATAAAAGTCCCCAAAGAACTTTTTAGTGTAGGAAAAGGGTTGTCTGTTGCCAATGCGTAG

Protein sequence

MVPQSKRLGQENSLGIIISELGLIGFVETESKWFLRGRRNSTVMIAMIIHKKAKPNVLNNSIHVIGFFIPATQVIKPFKIFPNPLPPKLWARMPIRGYELWRVEGMPTKCSIKVPKELFSVGKGLSVANA

Homology

[Close]

BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881023.1 (structural maintenance of chromosomes protein 6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

[Close]

BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881024.1 (structural maintenance of chromosomes protein 6B-like isoform X2 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

[Close]

BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881026.1 (structural maintenance of chromosomes protein 6B-like isoform X4 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

[Close]

BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881025.1 (structural maintenance of chromosomes protein 6B-like isoform X3 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

[Close]

BLAST of CcUC02G038020.1 vs. NCBI nr
Match: XP_038881027.1 (structural maintenance of chromosomes protein 6B-like isoform X5 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 14 LGIIISELGLIGFVETESKWFLRGRRNST 43
          +GIIISELGLIGFVETES+ FLRGRRNST
Sbjct: 1  MGIIISELGLIGFVETESRCFLRGRRNST 29

The following BLAST results are available for this feature:

BLAST of CcUC02G038020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881023.1	7.0e-04	89.66	structural maintenance of chromosomes protein 6-like isoform X1 [Benincasa hispi...	[more]
XP_038881024.1	7.0e-04	89.66	structural maintenance of chromosomes protein 6B-like isoform X2 [Benincasa hisp...	[more]
XP_038881026.1	7.0e-04	89.66	structural maintenance of chromosomes protein 6B-like isoform X4 [Benincasa hisp...	[more]
XP_038881025.1	7.0e-04	89.66	structural maintenance of chromosomes protein 6B-like isoform X3 [Benincasa hisp...	[more]
XP_038881027.1	7.0e-04	89.66	structural maintenance of chromosomes protein 6B-like isoform X5 [Benincasa hisp...	[more]

BLAST of CcUC02G038020.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G038020.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G038020.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G038020	CcUC02G038020	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G038020.1-exon	CcUC02G038020.1-exon-CicolChr02:33472824..33472949	exon
CcUC02G038020.1-exon	CcUC02G038020.1-exon-CicolChr02:33473008..33473147	exon
CcUC02G038020.1-exon	CcUC02G038020.1-exon-CicolChr02:33473231..33473351	exon
CcUC02G038020.1-exon	CcUC02G038020.1-exon-CicolChr02:33473395..33473400	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G038020.1-cds	CcUC02G038020.1-cds-CicolChr02:33472824..33472949	CDS
CcUC02G038020.1-cds	CcUC02G038020.1-cds-CicolChr02:33473008..33473147	CDS
CcUC02G038020.1-cds	CcUC02G038020.1-cds-CicolChr02:33473231..33473351	CDS
CcUC02G038020.1-cds	CcUC02G038020.1-cds-CicolChr02:33473395..33473400	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G038020.1	CcUC02G038020.1-protein	polypeptide