CcUC01G006570 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G006570
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	CicolChr01: 6864088 .. 6864378 (+)
RNA-Seq Expression	CcUC01G006570
Synteny	CcUC01G006570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTACGAACCGAAACCTGCAGTCGCCACGGTGCCGGAGCCACCACCGCGCTTCTTTTCTTCTTCTGGGTCCTTCTCATTTTACCTCCGGCTAGCCTCTGTCTTCACCTGCCACGGCCACCGCCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCGCGGCATCGTTTCGCCATGCACCGCCTGCAACTGAGCTTCTCGACCGCCGTCAGTCAGCCGCCGACGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

mRNA sequence

ATGAGAGTACGAACCGAAACCTGCAGTCGCCACGGTGCCGGAGCCACCACCGCGCTTCTTTTCTTCTTCTGGGTCCTTCTCATTTTACCTCCGGCTAGCCTCTGTCTTCACCTGCCACGGCCACCGCCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCGCGGCATCGTTTCGCCATGCACCGCCTGCAACTGAGCTTCTCGACCGCCGTCAGTCAGCCGCCGACGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGAGAGTACGAACCGAAACCTGCAGTCGCCACGGTGCCGGAGCCACCACCGCGCTTCTTTTCTTCTTCTGGGTCCTTCTCATTTTACCTCCGGCTAGCCTCTGTCTTCACCTGCCACGGCCACCGCCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCGCGGCATCGTTTCGCCATGCACCGCCTGCAACTGAGCTTCTCGACCGCCGTCAGTCAGCCGCCGACGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MRVRTETCSRHGAGATTALLFFFWVLLILPPASLCLHLPRPPPPPPSRKLARFSAASFRHAPPATELLDRRQSAADAAAYGDDKRLIHTGPNPLHN

Homology

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BLAST of CcUC01G006570 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 1  MRVRTETCSRHGAGATTALLFFFWVLLILPPASLCLHLPRPPPPPPSRKLARFSAASFRH 60
          M  +T T SRH A  TTALL FFWVLLIL P +LCLHL  PPPPPPSRKLARFS ASFRH
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHL--PPPPPPSRKLARFSTASFRH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     ELLDRRQ    A+AY +DKRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELLDRRQ---PASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of CcUC01G006570 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 70/101 (69.31%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1  MRVRTETCSRHGAGATTALLFFFWVLLILPPASLCLHLPRPPPPPPSRKLARFSAASFRH 60
          M   T T SRH    TTAL  FFWVLLI  P +LCLHL  PPPPPPSRKLARFS A F H
Sbjct: 1  MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHL--PPPPPPSRKLARFSTAFFHH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     EL DR QSAA AAAYG++KRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of CcUC01G006570 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 8.2e-26
Identity = 74/102 (72.55%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1  MRVRTETCSRHGAGA--TTALLFFFWVLLILPPASLCLHLPRPPPPPPSRKLARFSAASF 60
          MRVRT TCSRHGAGA  TTAL+ F WVLLIL PA+  L    PP P   RKL RFS ASF
Sbjct: 1  MRVRTVTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASF 60

Query: 61 RHAPPAT---ELLDRRQSAAD-AAAYGDDKRLIHTGPNPLHN 97
          RHAPPAT   ELL RRQS+A  AAAYGD+KRLIHTGPNPLHN
Sbjct: 61 RHAPPATSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99

[Close]

BLAST of CcUC01G006570 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 5.1e-20
Identity = 61/93 (65.59%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 7  TCSRHGAGATT--ALLFFFWVLLILPPASLCLHLPRPPPPPPSRKLARFSAASFRHAPPA 66
          T + H + ATT  A L FFWVLLI PP +LCLHL  PPPPP SRKL  FS AS  HA   
Sbjct: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHL--PPPPPTSRKLVHFSTASLSHATSP 61

Query: 67 TELLDRR-QSAADAAAYGDDKRLIHTGPNPLHN 97
           ELL  R  SAA AA Y DDKRLIHTGPNPLHN
Sbjct: 62 PELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN 92

[Close]

BLAST of CcUC01G006570 vs. NCBI nr
Match: KAG6579251.1 (hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 6.7e-20
Identity = 66/95 (69.47%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   MRVRTETCSRHGAGA--TTALLFFFWVLLILPPASLCLHLPRPPPPPPSRKLARFSAASF 60
           MRVRT TCSRHGAGA  TTAL+ F WVLLIL PA+  L    PP P   RKL RFS ASF
Sbjct: 29  MRVRTVTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASF 88

Query: 61  RHAPPAT---ELLDRRQSAAD-AAAYGDDKRLIHT 90
           RHAP AT   ELL RRQS+A  AAAYGD+KRLIHT
Sbjct: 89  RHAPSATSPAELLHRRQSSAGAAAAYGDEKRLIHT 120

[Close]

BLAST of CcUC01G006570 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 30/61 (49.18%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 36 LHLPRPPPPPPSRKLARFSAASFRHAPPATELLDRRQSAADAAAYGDDKRLIHTGPNPLH 95
          LHL   PPPPP RK  R+S A FR      ++            YGDDKR++HTGPNPLH
Sbjct: 51 LHLVASPPPPPPRKALRYSTAPFRGPLSRDDI------------YGDDKRVVHTGPNPLH 99

Query: 96 N 97
          N
Sbjct: 111 N 99

[Close]

BLAST of CcUC01G006570 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 1  MRVRTETCSRHGAGATTALLFFFWVLLILPPASLCLHLPRPPPPPPSRKLARFSAASFRH 60
          M  +T T SRH A  TTALL FFWVLLIL P +LCLHL  PPPPPPSRKLARFS ASFRH
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHL--PPPPPPSRKLARFSTASFRH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     ELLDRRQ    A+AY +DKRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELLDRRQ---PASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of CcUC01G006570 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 1  MRVRTETCSRHGAGATTALLFFFWVLLILPPASLCLHLPRPPPPPPSRKLARFSAASFRH 60
          M  +T T SRH A  TTALL FFWVLLIL P +LCLHL  PPPPPPSRKLARFS ASFRH
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHL--PPPPPPSRKLARFSTASFRH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     ELLDRRQ    A+AY +DKRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELLDRRQ---PASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of CcUC01G006570 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.0e-27
Identity = 70/101 (69.31%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1  MRVRTETCSRHGAGATTALLFFFWVLLILPPASLCLHLPRPPPPPPSRKLARFSAASFRH 60
          M   T T SRH    TTAL  FFWVLLI  P +LCLHL  PPPPPPSRKLARFS A F H
Sbjct: 1  MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHL--PPPPPPSRKLARFSTAFFHH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     EL DR QSAA AAAYG++KRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of CcUC01G006570 vs. ExPASy TrEMBL
Match: A0A178WDE5 (CLE17 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g65080 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 30/61 (49.18%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 36 LHLPRPPPPPPSRKLARFSAASFRHAPPATELLDRRQSAADAAAYGDDKRLIHTGPNPLH 95
          LHL   PPPPP RK  R+S A FR      ++            YGDDKR++HTGPNPLH
Sbjct: 51 LHLVASPPPPPPRKALRYSTAPFRGPLSRDDI------------YGDDKRVVHTGPNPLH 99

Query: 96 N 97
          N
Sbjct: 111 N 99

[Close]

BLAST of CcUC01G006570 vs. ExPASy TrEMBL
Match: A0A6J5TNN3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS7258 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.6e-05
Identity = 42/106 (39.62%), Postives = 51/106 (48.11%), Query Frame = 0


Query: 9   SRHGAG-ATTALLFFFWVLLILPPAS-LCLHLPRPPPP------------PPSRKLARFS 68
           SRHG G A    +FFFWV+LI  P S L +   R                PP+RK     
Sbjct: 32  SRHGRGEARNFAIFFFWVILIFAPTSNLVVSASRTSTSHGDELGGGRFMRPPTRKTRFLG 91

Query: 69  AASFRHAPPATELLDRRQ----SAADAAAYGDDKRLIHTGPNPLHN 97
             SF +AP +T   D       +      YGDDKR++HTGPNPLHN
Sbjct: 92  KVSF-YAPSSTPSHDVHHFVGINGGPDKLYGDDKRIVHTGPNPLHN 136

[Close]

BLAST of CcUC01G006570 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 57.4 bits (137), Expect = 7.4e-09
Identity = 30/61 (49.18%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 36 LHLPRPPPPPPSRKLARFSAASFRHAPPATELLDRRQSAADAAAYGDDKRLIHTGPNPLH 95
          LHL   PPPPP RK  R+S A FR      ++            YGDDKR++HTGPNPLH
Sbjct: 51 LHLVASPPPPPPRKALRYSTAPFRGPLSRDDI------------YGDDKRVVHTGPNPLH 99

Query: 96 N 97
          N
Sbjct: 111 N 99

[Close]

BLAST of CcUC01G006570 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 57.4 bits (137), Expect = 7.4e-09
Identity = 30/61 (49.18%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 36 LHLPRPPPPPPSRKLARFSAASFRHAPPATELLDRRQSAADAAAYGDDKRLIHTGPNPLH 95
          LHL   PPPPP RK  R+S A FR      ++            YGDDKR++HTGPNPLH
Sbjct: 51 LHLVASPPPPPPRKALRYSTAPFRGPLSRDDI------------YGDDKRVVHTGPNPLH 99

Query: 96 N 97
          N
Sbjct: 111 N 99

[Close]

BLAST of CcUC01G006570 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 41.2 bits (95), Expect = 5.5e-04
Identity = 29/67 (43.28%), Postives = 33/67 (49.25%), Query Frame = 0


Query: 32  ASLCLHLPRPPPPPPSRKLARFSAASFRHAPPATELL--DRRQSAADAAAYGDDKRLIHT 91
           +S  L  P   P  P RK   F   +   AP AT      RR+       Y DDKRL+HT
Sbjct: 38  SSSALFAPDHYPSLP-RKAGHFHEMASFQAPKATVSFTGQRREEENRDEVYKDDKRLVHT 97

Query: 92  GPNPLHN 97
           GPNPLHN
Sbjct: 98  GPNPLHN 103

The following BLAST results are available for this feature:

BLAST of CcUC01G006570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437694.1	2.5e-27	72.28	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
XP_011656246.1	1.6e-26	69.31	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]
KAG7016766.1	8.2e-26	72.55	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601877.1	5.1e-20	65.59	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6579251.1	6.7e-20	69.47	hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC01G006570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	1.0e-07	49.18	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]

BLAST of CcUC01G006570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY55	1.2e-27	72.28	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	1.2e-27	72.28	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
A0A0A0KSY2	8.0e-27	69.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]
A0A178WDE5	3.9e-05	49.18	CLE17 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g65080 PE=4 SV=1	[more]
A0A6J5TNN3	8.6e-05	39.62	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS7258 PE=4 SV...	[more]

BLAST of CcUC01G006570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	7.4e-09	49.18	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	7.4e-09	49.18	CLAVATA3/ESR-RELATED 17	[more]
AT2G01505.1	5.5e-04	43.28	CLAVATA3/ESR-RELATED 16	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..96
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 3..96
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 3..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G006570.1	CcUC01G006570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010078	maintenance of root meristem identity
biological_process	GO:0010088	phloem development
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0048731	system development
cellular_component	GO:0005576	extracellular region