Sed0026946 (gene) Chayote v1

Overview


Name	Sed0026946
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pre-mRNA-splicing factor 38
Location	LG03: 5559706 .. 5563822 (+)
RNA-Seq Expression	Sed0026946
Synteny	Sed0026946

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCCCTTGTTGTCCGATGTTGAAAGAAGTCATGCGTCTAGTTATGTGCCCTTGTTACCATCACTTGACGTAATTTCTTAAATTAATTTTTTCAGGTTGGATTCCTCTACTTGAGATATGTTGCAGATCCAAAGACTCTCTGGAATTGGTTTGAACCTTATGTTAAAGATGATGAGGTATGTGATGCATATAGGTGCTTGATATATATATTTTTTAATATGAGGTCTGTTGCTAATCATAACAGTAAGCATGCATGTGTTTGTGATAGGGTTCTATCAATTCATTTATCAACTTAGAACCAACGGGAAGAGTTAGAGCTCCCTACTCTCCTGAATTCCCTCTAGAGAATTCCCCGAATACAATACTCAATACGCAGATAATCAAAATAACAAAATAACAAAAGCATGTTAAGCTAAATACTATTCCATCCTTCTAACAGAAAGGGAAAACGAATATTCCAAAGAAATAAAAAAACTAACAACTTATGCCACATCAGCCACTTGCATCTTCATCTTCTTCCTTGTGTGGATAATACTTATAGTTTGGCTTAAAATTTGTAAGTTGATTTTAGTTCTTTGTATCATTGTTTTCCGTTGCCTTTAATATAATAATGTTGATAACTGGTTAAGCCCAGGCCTTTTATCAATTTTATCGAGAGGTATTATATACTTATGATGCTGTGTAAGTGATCAAATTTGAATTTTAGACCGTTGATACTACTATTCAGTCATTACTCTGTGTCCTTGTAATTGAATTTCTACTGCAACCCTCCTTTTGTAGGGCACGCCCTTCTATTCAAGAAGGGACGCCCTGCCCCTTTGCCTGTTAGCAATTTTTGCTCGGTTTAGTGGTCTAAATGAAGTTTGGGCTGCTTCTTATCAAGGAAAAAAAAATCTACTGCAATGCTAGTCTAAAAAAGTAGAGGCAGTTCACTTGATATTAGCATTAGCTCACATCACTCCAATTGCCTAGCAATCAACACTATCCCTAGTTGGGTTCTGGTTTTGTTCCTTTGCGAGTGGAAGTGAAAATGACCTTGAGACTCCTTTCTTTTGCACTTTTTTAGTTATACAAGCAGACAATTTTGTTTGTAATAGAAGGAAAGAGGAATAGAAGTTGTGGATCAACAGAACAGACACAAGACTCGTTTTTTGTGTTCTGTTTTTCATTATGTTTGAGATCACTATAGCATATTGAAGTTAATGATATATTTCTTTACAAAGCTGGCATTGATGAGATAAAAATAAATCCTTTTAGGAGGGCAAACAACCTCCTTAAAACAACCGTTAGGAAATTCTGAGAAATCAATTTGAATAAGACTCCTATCGTGGATTTTTATCACCTATGTTTTTACTTATGTCGAAACTTCGGTTGATGTAATTAAATTTACTCAAACCCACTAGCTTAACCTTTTGGATTGATTGGTGATTTAATATAATTCAACATGGTATGAGAGTATAAAGTCCTAAGTTTGAGCTCTTACGAGTCATTTCATTCCCAATTTAAAATTGAATTCCACTTGTAGGGGTATTTCTCAAATTTCAAAGCTCACAAGGAGGGAGTGTTAGTTGATATAATTAAATTTACCCAATCTACTAGTTTAAGCTTTTGGGTTGATTGGTTGTTTAACATAATTTAACAACCTTTCAAGTCAACTGAGACTGTCTTTGAGTTTTGAGTCTTTGGACCTCCTGAATAAAATTATTGCTTACCTATGCCAATATCTTAGGCTTTTTTTTTTGAAGAAATGGAAACTGAAAGGAGTAAAGAGATAAATAGGTGGATTTCAAGAATACGGATGGTGTGGGTTAGTTGGGATTTGGAAGTACCTGTATATTGTCAACTTATTTTGGGCCTTTTATGTGAACGCTCATTCCTTGTCTGTGCCTTCATTGCTCTAGCATTTTTCAGAGTGCTTTTGGTCTGTCCATTGTTTGACTTGTAGTCTCTTTTTCCCCTTCAACAGATAACAGACAGAAAAGGATCTCTTCCTTACAATTCTACGCTTCCTTACAATTCTACGATGTTCCATTTTTTTTTCTTCCTATTTTTAAAGGATTCTTACTAACCTACGGCTATAAAAAGATAAAAAGGAACTAATAGATTTGATGTTTCAGGAATTTTCACCAGGATCTCATGGACGAATGACTACGATGGGTGTTTATGTGCGTGACTTGCTTCTTGGACAGGTCAGGTTATATTATATTATACCCACCATTTTCCCTTCAAATTTCAAGTTTTTGGTTATATATATTTGTTTCTTTTTTAACGTCTTTCCTTCAAAGACTTGATAAACTGTGTAGATTTACAGTTGGTATGTGAATCTTGTCAGCTGATGTTGACGTTTCTCTATTGTTTTAATCATGGATGGAAATGCTGCATTGTTGGGAGCTTTTATTGGGTACTGATAATACTTTTTGTAACTTTTCATCAGTCAAAGTTATTGTATCTTATCCAAAAAAAAAGTTCATGAAAAGAGCTACAGCATAACAGTAACTCCCACCCTCCCCTTAAAGTTAATAAGATTTTTTCCAACAGAAAAAAACACATCATATTTTTTCGATTTGTTATGGTGATTGGGAAGTCATGTTCTCTGTTTTAGAAGGCCGTTTTGTCTTCATTTTTTTGTTTCACTTTTCTGATGTTTCTAAATTTTTGTTATAGTATGTGGTAGAAAGAGATTGATCATGGTGTATAAGATGAATAGAATAAAGCATTAGGACAAGGTTTTGCTTTGGTCACATTGTTGTTATCTAAAACATGTGATTAGTAGGGACTTCACTTTGTTGGATTATTGATGAGGTAAATGGTAAGTTTTTGTATGCAAGTGTTTTAAATCGTATGCAGCCCTCAAGTATCCACTCTTCTGTTCACAACTAATTGAGAAGGGAAGGAACAAACTGAAATGGTTTATGTTTTAATGCTTTATCTGTAGAAAGCTGATGCAGATCTTGATATCTATATAGGTTTGCATTTGGCCGATAGAGAGGAATGATCATTAATACTTTATTTTATTTGTCCTTGTTGGCTGTTTTGTGATTCAAATGTTTTATTGATTGTACTCTGTTGTTCCAACAGGGTGGACCGATCAGTTTGCTACATGTTTAAACTCGAACAAATTAATTACATCTGTCGTTTTTTTATACTGTATGTGCATACGTGCATATGTACCGTTACTTTTAAATCCTTGTCTTTGTTGTTAAAAAATACCCCCATTTTGTTTTGTTCATTGCAGTACTACTTTGATACCCTTTTCCCTCGTATTCCAGTTCCTGTCTTGCGGCAAGTTGTAGCTAATCTTGAAAAATTGAAGCTTCCCAGCAAACATTCTGGGGTGACAGGGGAAACCCATCGAATCGGGTCTGAGGACACTGCACGACGGCCACCTTCTGTAAAAGCTTCACTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTCGTACACTACCACCATCAGTTAATGGCAGAGATATCAGCGATGATCTACGAAGATCTCCCAGCAGCCGCCGTAGTCAAAGTCGTGAACATCCTGATAACAGGGAGAGGAGCAGGGATAGAGAATTTGACAGAGAGAGAAGTAGAGATAGAGATGATAGGGACAAAGGAAGGGATAGGGATATGGATAGAGATCGAGATCGTGATCGTGATCGAGACAGAGAAAAGTATAGAGATCGGGAGAGAGATCGAGATAGAGAAAGGGACAGGGAGAGAGAGCGGGACAGAGAACGGAGTTACGATTATGATAGAAGGACTCATTATGCTGATAGAAATAGTAGAAGGGAATACGAAAGTAGTAGCCGTGATGGTGGTGCCAGGCATTACCGAAGGAGTCATAGTCGAAGTAGGAGCAGGAGTAGAAGTCGAAGTCGAAGTGTACAAACAGGGAATGCCCACCACAAGCGAGAACCTAGTCCTGTACGAGGCGGTACTACAGGCAAGACATCGCTTATATCGAGCAACTTGGCAAAACTGCAAGATATATACGGCGATGCGAGCGAGCAGAAAGGGGATTCGAGCAAAGGAAGAATAAGGGATAGTAGTGGTGAAGAGGTGATCAGACTGGGTGGTGGTTCCTGGAAATAG

mRNA sequence

ATGGTGCCCTTGTTGTCCGATGTTGAAAGAAGTCATGCGTCTAGTTATGTTGGATTCCTCTACTTGAGATATGTTGCAGATCCAAAGACTCTCTGGAATTGGTTTGAACCTTATGTTAAAGATGATGAGGAATTTTCACCAGGATCTCATGGACGAATGACTACGATGGGTGTTTATGTGCGTGACTTGCTTCTTGGACAGTACTACTTTGATACCCTTTTCCCTCGTATTCCAGTTCCTGTCTTGCGGCAAGTTGTAGCTAATCTTGAAAAATTGAAGCTTCCCAGCAAACATTCTGGGGTGACAGGGGAAACCCATCGAATCGGGTCTGAGGACACTGCACGACGGCCACCTTCTGTAAAAGCTTCACTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTCGTACACTACCACCATCAGTTAATGGCAGAGATATCAGCGATGATCTACGAAGATCTCCCAGCAGCCGCCGTAGTCAAAGTCGTGAACATCCTGATAACAGGGAGAGGAGCAGGGATAGAGAATTTGACAGAGAGAGAAGTAGAGATAGAGATGATAGGGACAAAGGAAGGGATAGGGATATGGATAGAGATCGAGATCGTGATCGTGATCGAGACAGAGAAAAGTATAGAGATCGGGAGAGAGATCGAGATAGAGAAAGGGACAGGGAGAGAGAGCGGGACAGAGAACGGAGTTACGATTATGATAGAAGGACTCATTATGCTGATAGAAATAGTAGAAGGGAATACGAAAGTAGTAGCCGTGATGGTGGTGCCAGGCATTACCGAAGGAGTCATAGTCGAAGTAGGAGCAGGAGTAGAAGTCGAAGTCGAAGTGTACAAACAGGGAATGCCCACCACAAGCGAGAACCTAGTCCTGTACGAGGCGGTACTACAGGCAAGACATCGCTTATATCGAGCAACTTGGCAAAACTGCAAGATATATACGGCGATGCGAGCGAGCAGAAAGGGGATTCGAGCAAAGGAAGAATAAGGGATAGTAGTGGTGAAGAGGTGATCAGACTGGGTGGTGGTTCCTGGAAATAG

Coding sequence (CDS)

ATGGTGCCCTTGTTGTCCGATGTTGAAAGAAGTCATGCGTCTAGTTATGTTGGATTCCTCTACTTGAGATATGTTGCAGATCCAAAGACTCTCTGGAATTGGTTTGAACCTTATGTTAAAGATGATGAGGAATTTTCACCAGGATCTCATGGACGAATGACTACGATGGGTGTTTATGTGCGTGACTTGCTTCTTGGACAGTACTACTTTGATACCCTTTTCCCTCGTATTCCAGTTCCTGTCTTGCGGCAAGTTGTAGCTAATCTTGAAAAATTGAAGCTTCCCAGCAAACATTCTGGGGTGACAGGGGAAACCCATCGAATCGGGTCTGAGGACACTGCACGACGGCCACCTTCTGTAAAAGCTTCACTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTCGTACACTACCACCATCAGTTAATGGCAGAGATATCAGCGATGATCTACGAAGATCTCCCAGCAGCCGCCGTAGTCAAAGTCGTGAACATCCTGATAACAGGGAGAGGAGCAGGGATAGAGAATTTGACAGAGAGAGAAGTAGAGATAGAGATGATAGGGACAAAGGAAGGGATAGGGATATGGATAGAGATCGAGATCGTGATCGTGATCGAGACAGAGAAAAGTATAGAGATCGGGAGAGAGATCGAGATAGAGAAAGGGACAGGGAGAGAGAGCGGGACAGAGAACGGAGTTACGATTATGATAGAAGGACTCATTATGCTGATAGAAATAGTAGAAGGGAATACGAAAGTAGTAGCCGTGATGGTGGTGCCAGGCATTACCGAAGGAGTCATAGTCGAAGTAGGAGCAGGAGTAGAAGTCGAAGTCGAAGTGTACAAACAGGGAATGCCCACCACAAGCGAGAACCTAGTCCTGTACGAGGCGGTACTACAGGCAAGACATCGCTTATATCGAGCAACTTGGCAAAACTGCAAGATATATACGGCGATGCGAGCGAGCAGAAAGGGGATTCGAGCAAAGGAAGAATAAGGGATAGTAGTGGTGAAGAGGTGATCAGACTGGGTGGTGGTTCCTGGAAATAG

Protein sequence

MVPLLSDVERSHASSYVGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRDDRDKGRDRDMDRDRDRDRDRDREKYRDRERDRDRERDRERERDRERSYDYDRRTHYADRNSRREYESSSRDGGARHYRRSHSRSRSRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTSLISSNLAKLQDIYGDASEQKGDSSKGRIRDSSGEEVIRLGGGSWK

Homology

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BLAST of Sed0026946 vs. NCBI nr
Match: XP_038875168.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Benincasa hispida] >XP_038875169.1 pre-mRNA splicing factor SR-like 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 532.3 bits (1370), Expect = 3.2e-147
Identity = 309/360 (85.83%), Postives = 323/360 (89.72%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           +GFLYLRYVADPKTLW WFEPYVKD+EEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR
Sbjct: 97  IGFLYLRYVADPKTLWTWFEPYVKDEEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 156

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 157 IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 216

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STRDSSPVRRTLPPS N RD SDDLRRSPSSRRSQSREHPD+RERSRDR++DRERSRDRD
Sbjct: 217 STRDSSPVRRTLPPSANDRDNSDDLRRSPSSRRSQSREHPDSRERSRDRDYDRERSRDRD 276

Query: 197 -------DRDKGRDRDMDRDRDRDR--DRDREKYRDRERDRDRE------RDRERERDRE 256
                  DRD  RDRD  RDRDRDR  DRDREKYRDRERDRDRE      R+R+RERDRE
Sbjct: 277 YDRERSRDRDHDRDRDRGRDRDRDREYDRDREKYRDRERDRDRERERARDRERDRERDRE 336

Query: 257 RSYDYDRRTHYADRNSRREYESSSRDGGARHYRRSHSRSRSRSRSRSRSVQTGNAHHKRE 316
           RSYDYDRRTHY DR SRR++E SSRDGG+RHYRR  SRSRSRSRSRSRS+QTGNAHH+RE
Sbjct: 337 RSYDYDRRTHYNDRESRRDFERSSRDGGSRHYRR--SRSRSRSRSRSRSLQTGNAHHERE 396

Query: 317 PSPVRGGTTGKTSLISSNLAKLQDIYGDASEQKGDSSKGRI--RDSSGEEVIRLGGGSWK 360
           PSP RGGTT KTS ISSNLAKL+DIYGD SEQKGDSSK R+  RDSSGEEVIRL GG WK
Sbjct: 397 PSPARGGTTEKTSSISSNLAKLKDIYGDVSEQKGDSSKERVNRRDSSGEEVIRL-GGYWK 453

[Close]

BLAST of Sed0026946 vs. NCBI nr
Match: XP_022141497.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Momordica charantia] >XP_022141498.1 pre-mRNA splicing factor SR-like 1 isoform X1 [Momordica charantia])

HSP 1 Score: 525.0 bits (1351), Expect = 5.0e-145
Identity = 303/368 (82.34%), Postives = 321/368 (87.23%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           +GFLYLRYVADPKTLWNWFEPYVKD+EEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR
Sbjct: 97  IGFLYLRYVADPKTLWNWFEPYVKDEEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 156

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 157 IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 216

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STRDSSPVRRTLPPS N +D  DD+RRSPSSRRSQSREHPDN ERSRDR++DRERSRDRD
Sbjct: 217 STRDSSPVRRTLPPSANDKDNGDDVRRSPSSRRSQSREHPDNGERSRDRDYDRERSRDRD 276

Query: 197 -DRDKGRDRDMD----RDRDRDRDRDREKYRDRERDRDRERD------------------ 256
            DRD+ RDRD D    RDRDRDRDRDREKYRDRERDRDR+RD                  
Sbjct: 277 HDRDRSRDRDHDRDRGRDRDRDRDRDREKYRDRERDRDRDRDRDRDRDRERERERERVRE 336

Query: 257 RERERDRERSYDYDRRTHYADRNSRREYESSSRDGGARHYRRSHSRSRSRSRSRSRSVQT 316
           RER+RDRERSYDYDRR+HYADR+SRR+YE SSRD G+RHYRR  SRSRSRSRSRSRS+QT
Sbjct: 337 RERDRDRERSYDYDRRSHYADRDSRRDYEKSSRDDGSRHYRR--SRSRSRSRSRSRSLQT 396

Query: 317 GNAHHKREPSPVRGGTTGKTSLISSNLAKLQDIYGDASEQKGDSSKGRI--RDSSGEEVI 360
            NAHH+R PSPVR G T KTS ISSNLAKL+DIYGD S+QKGD SK R+  RD SGEEV 
Sbjct: 397 VNAHHERVPSPVRDGNTDKTSNISSNLAKLKDIYGDVSDQKGDCSKERVPKRDGSGEEVF 456

[Close]

BLAST of Sed0026946 vs. NCBI nr
Match: XP_011655154.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Cucumis sativus] >XP_011655155.1 pre-mRNA splicing factor SR-like 1 isoform X1 [Cucumis sativus] >XP_031742200.1 pre-mRNA splicing factor SR-like 1 isoform X1 [Cucumis sativus] >XP_031742201.1 pre-mRNA splicing factor SR-like 1 isoform X1 [Cucumis sativus] >XP_031742202.1 pre-mRNA splicing factor SR-like 1 isoform X1 [Cucumis sativus] >KGN51086.2 hypothetical protein Csa_023135 [Cucumis sativus])

HSP 1 Score: 521.9 bits (1343), Expect = 4.3e-144
Identity = 300/349 (85.96%), Postives = 315/349 (90.26%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           +GFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR
Sbjct: 97  IGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 156

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPVLRQVV+NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 157 IPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 216

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STRDSSPVRRTLP S N RD +DDLRRSPS RRSQSREHPD+RERSRDREFDRERSRDR 
Sbjct: 217 STRDSSPVRRTLPSSANDRDNNDDLRRSPSIRRSQSREHPDSRERSRDREFDRERSRDR- 276

Query: 197 DRDKGRDRDMDRDRDRDRDRDREKYRDRERDRDRE------RDRERERDRERSYDYDRRT 256
           D D+ RDR  DRDRDR+ DRDREKYRDRERDRDRE      R+R+RERDRERSYDYDRRT
Sbjct: 277 DYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRT 336

Query: 257 HYADRNSRREYESSSRDGGARHYRRSHSRSRSRSRSRSRSVQTGNAHHKREPSPVRGGTT 316
           HY+DR SRR++E SSRDGG RHYRR  SRSRSRSRSRSRS+QT   HH+REPSP RGGTT
Sbjct: 337 HYSDRESRRDFERSSRDGGTRHYRR--SRSRSRSRSRSRSLQT---HHEREPSPARGGTT 396

Query: 317 GKTSLISSNLAKLQDIYGDASEQKGDSSKGRIRDSSGEEVIRLGGGSWK 360
            K S+ISSNLAKL+DIYGD SEQKGDSSK   RD SGEEVIRL GGSWK
Sbjct: 397 EKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRL-GGSWK 438

[Close]

BLAST of Sed0026946 vs. NCBI nr
Match: TYK18924.1 (pre-mRNA-splicing factor 38B [Cucumis melo var. makuwa])

HSP 1 Score: 512.7 bits (1319), Expect = 2.6e-141
Identity = 302/378 (79.89%), Postives = 320/378 (84.66%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           +GFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR
Sbjct: 97  IGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 156

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPVLRQVV+NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 157 IPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 216

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STRDSSPVRRTLP SVN RDI+DDLRRSPS+RRSQSREHPD+RERSRDRE+DRERSRDR+
Sbjct: 217 STRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDRE 276

Query: 197 ---------------------DRDKGRDRDMDRDRDRDR--------DRDREKYRDRERD 256
                                DR++ RDRD DRDRDR R        DRDREKYRDRERD
Sbjct: 277 YDRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRDREKYRDRERD 336

Query: 257 RDRE------RDRERERDRERSYDYDRRTHYADRNSRREYESSSRDGGARHYRRSHSRSR 316
           RDRE      R+R+RERDRERSYDYDRRTHY+DR SRR++E SSRDGG RHYRR  SRSR
Sbjct: 337 RDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRR--SRSR 396

Query: 317 SRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTSLISSNLAKLQDIYGDASEQKGDSSKGR 360
           SRSRSR RS+QT   HH+RE SP RGGTT K S+ISSNLAKL+DIYGD SEQKGDSSK  
Sbjct: 397 SRSRSRGRSLQT---HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKIN 456

[Close]

BLAST of Sed0026946 vs. NCBI nr
Match: KAA0046277.1 (pre-mRNA-splicing factor 38B [Cucumis melo var. makuwa])

HSP 1 Score: 508.8 bits (1309), Expect = 3.7e-140
Identity = 302/388 (77.84%), Postives = 320/388 (82.47%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           +GFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR
Sbjct: 97  IGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 156

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPVLRQVV+NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 157 IPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 216

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STRDSSPVRRTLP SVN RDI+DDLRRSPS+RRSQSREHPD+RERSRDRE+DRERSRDR+
Sbjct: 217 STRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDRE 276

Query: 197 -------------------------------DRDKGRDRDMDRDRDRDR--------DRD 256
                                          DR++ RDRD DRDRDR R        DRD
Sbjct: 277 YDRERSRDRDYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRD 336

Query: 257 REKYRDRERDRDRE------RDRERERDRERSYDYDRRTHYADRNSRREYESSSRDGGAR 316
           REKYRDRERDRDRE      R+R+RERDRERSYDYDRRTHY+DR SRR++E SSRDGG R
Sbjct: 337 REKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTR 396

Query: 317 HYRRSHSRSRSRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTSLISSNLAKLQDIYGDAS 360
           HYRR  SRSRSRSRSR RS+QT   HH+RE SP RGGTT K S+ISSNLAKL+DIYGD S
Sbjct: 397 HYRR--SRSRSRSRSRGRSLQT---HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVS 456

[Close]

BLAST of Sed0026946 vs. ExPASy Swiss-Prot
Match: Q8RWB1 (Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.3e-82
Identity = 202/346 (58.38%), Postives = 239/346 (69.08%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           VGFLYLRYVAD KTLW W+EPY+KDDEEFSPGS+GRMTTMGVYVRDLLLG YYFDTLFPR
Sbjct: 98  VGFLYLRYVADAKTLWTWYEPYIKDDEEFSPGSNGRMTTMGVYVRDLLLGLYYFDTLFPR 157

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPV+RQ+V+NLEK+ LP+K SG TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 158 IPVPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRA 217

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STR SSPVRR  PP+   R+  D++++  S RRSQSR++                     
Sbjct: 218 STRGSSPVRRP-PPTGYDRNGGDEVQQR-SPRRSQSRDYYS------------------- 277

Query: 197 DRDKGRDRDMDRDRDRDRDRDREKYRDRERDRDRERDRERERDRERSYDYDRRTHYADRN 256
                           DRD DR++ R+RE+DR+RER R+R R+RER Y  DRR       
Sbjct: 278 ----------------DRDSDRQREREREKDRERERGRDRYRERERDYGNDRR------- 337

Query: 257 SRREYESSSRDGGARHYRRSHS-RSRSRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTS- 316
           SRR+Y+S SR       R  H  RSRSRSRSRSRSVQ      +REP+P R  +  + S 
Sbjct: 338 SRRDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSRSVQI-----EREPTPKRDSSNKEKSA 393

Query: 317 -LISSNLAKLQDIYGDASEQKGDSSKGRIRDSSGEEVIRLGGGSWK 360
             ++SNLAKL+D+YGDAS QK D   G  +DSS EEVI+LGG SW+
Sbjct: 398 VTVNSNLAKLKDLYGDASSQKRDEGFGTRKDSSSEEVIKLGGSSWR 393

[Close]

BLAST of Sed0026946 vs. ExPASy Swiss-Prot
Match: Q6AXY7 (Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-18
Identity = 108/325 (33.23%), Postives = 166/325 (51.08%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFS-PGSHGRMTTMGVYVRDLLLGQYYFDTLFP 76
           +GF+Y+RY   P  LW+WFE ++ D+E+       G + T+G  +R  L    +F TLFP
Sbjct: 160 LGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFP 219

Query: 77  RIPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHR 136
           RIPVPV + +   ++      K  G  G    I      RR  S + SLS    +R+P R
Sbjct: 220 RIPVPVQKNIDQQIKTRPRKIKKDGKEG-VEEIDRHIERRRSRSPRRSLS---PRRSPRR 279

Query: 137 ASTRD-------SSPVRRTLPPSVNGRDISDDLR-RSPSSRRSQSREHPDNRERSRDREF 196
           + +R        SS   R L      + +  + + R    RRS+S +   +R RSR RE 
Sbjct: 280 SRSRSHHRDGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSLDRGLDRRRSRSRER 339

Query: 197 DRERSRDRD------DRDKGRDRDMDRDRDRDRDRDREKYRDRERDRDRERDRERER--- 256
            R RSR RD      DRD+ R+++ +R R RDRD D+++  DRERDR+R R+R +E+   
Sbjct: 340 HRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKDRGNDRERDRERSRERSKEQRSR 399

Query: 257 ----DRERSYDYDRRTHYADRNSRREYESSSRDGGARHYRRSHSRS---RSRSRSRSRSV 316
               +++   D + R H  D+   ++  S SR    +H  RS SR+   RSRSRS+ ++ 
Sbjct: 400 GEGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKDKAS 459

[Close]

BLAST of Sed0026946 vs. ExPASy Swiss-Prot
Match: Q80SY5 (Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-18
Identity = 111/325 (34.15%), Postives = 162/325 (49.85%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFS-PGSHGRMTTMGVYVRDLLLGQYYFDTLFP 76
           +GF+Y+RY   P  LW+WFE ++ D+E+       G + T+G  +R  L    +F TLFP
Sbjct: 161 LGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFP 220

Query: 77  RIPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHR 136
           RIPVPV + +   ++      K  G  G    I      RR  S + SLS    +R+P R
Sbjct: 221 RIPVPVQKNIDQQIKTRPRKIKKDGKEG-IEEIDRHVERRRSRSPRRSLS---PRRSPRR 280

Query: 137 ASTRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDR 196
           + +R  S  R     S   R++  +  R    R ++ RE    R RS DR  DR RSR R
Sbjct: 281 SRSR--SHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLDRRRSRSR 340

Query: 197 D---DRDKGRDRDMD-RDRDRDRDRDREKYRDRERDRDRERDRERERDRERS-------- 256
           +    R + RDR  D RDRDR+R+++ E+ R R+RD D+ER  +RERDRERS        
Sbjct: 341 ERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGSDRERDRERSRERSKEQR 400

Query: 257 -----------YDYDRRTHYADRNSRREYESSSRDGGARHYRRS-HSRSRSRSRSRSRSV 316
                       D + R H  D+   ++  S SR    +H  RS ++  RSRSRS+ +S 
Sbjct: 401 SRGDGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKHRSRSRNAGKRSRSRSKDKSS 460

[Close]

BLAST of Sed0026946 vs. ExPASy Swiss-Prot
Match: Q5VTL8 (Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-17
Identity = 115/332 (34.64%), Postives = 168/332 (50.60%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFS-PGSHGRMTTMGVYVRDLLLGQYYFDTLFP 76
           +GF+Y+RY   P  LW+WFE ++ D+E+       G + T+G  +R  L    +F TLFP
Sbjct: 160 LGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFP 219

Query: 77  RIPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHR 136
           RIPVPV + +   ++      K  G  G    I      RR  S + SLS    +R+P R
Sbjct: 220 RIPVPVQKNIDQQIKTRPRKIKKDGKEG-AEEIDRHVERRRSRSPRRSLS---PRRSPRR 279

Query: 137 ASTRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDR 196
           + +R  S  R     S   R++  +  R    R ++ RE    R RS DR  +R RSR R
Sbjct: 280 SRSR--SHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSR 339

Query: 197 D---DRDKGRDRDMD-RDRDRDRDRDREKYRDRERDRDRERDRERERDRERS-------- 256
           +    R + RDR  D RDRDR+R+++ E+ R R+RD D+ER  ERE++RERS        
Sbjct: 340 ERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKERERSRERSKEQR 399

Query: 257 -----------YDYDRRTHYAD-RNSRREYE-SSSRDGGARHYRRSHSRS---RSRSRSR 316
                       D D R H  D R+S++E + S SR    +H  RS SR+   RSRSRS+
Sbjct: 400 SRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSK 459

Query: 317 SRSVQTGNAHHKREPSPVRGGTTGKTSLISSN 320
            +S +  N   ++     R G+ G+T  +  +
Sbjct: 460 EKSSKHKNESKEKSNKRSRSGSQGRTDSVEKS 485

[Close]

BLAST of Sed0026946 vs. ExPASy Swiss-Prot
Match: Q6P7Y3 (Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-15
Identity = 110/342 (32.16%), Postives = 158/342 (46.20%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFS-PGSHGRMTTMGVYVRDLLLGQYYFDTLFP 76
           +GF+Y+RY   P  L +W++ ++ D+EE       G + T+G  +R  L    +F TLFP
Sbjct: 138 LGFMYIRYTQPPPDLVDWYDEFLDDEEELDVKAGGGCVMTVGEMLRSFLTKLEWFSTLFP 197

Query: 77  RIPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHR 136
           RIPVPV + +  ++                     +   R+PP             A   
Sbjct: 198 RIPVPVQKAIDQHM---------------------KSRPRKPPQKDEQEEEEEEATAAPA 257

Query: 137 ASTRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSR-----DREFDRE 196
           A T      RR+  P           RRSPS R+SQ+R    +  R R     D E +RE
Sbjct: 258 ADTGRHGDKRRSRTP-----------RRSPSPRKSQNRSRSRSHHRERHGASFDYELERE 317

Query: 197 RSRDRDDR---DKGRDRDMDRDRDRDRDRDREKYRDRERDRDRERDRERERDRERSYDYD 256
           R R R +R   D+ RDRD DR+RDR+RDRDR + R  +R+ +R R R RER R RS   D
Sbjct: 318 RDRQRKEREGKDRDRDRDRDRERDRERDRDRRRSRTPDRNAERRRSRSRERRRSRSTSRD 377

Query: 257 RRTHYADRNSRREYESSSRDGGARHYRRSHSRSRSRSRSRSRSVQTGNAHHKREPSPVRG 316
           +RT   DR+  RE ES      +R   R H + R RS+ + RS   G     ++    + 
Sbjct: 378 KRTERKDRDKDREAESERE--RSRKKDREHHKDRERSKDK-RSKGEGEERRHKDDKEEKK 437

Query: 317 GTTGKTSLISSNLAKLQDIYGDASEQKGDSSKGRIRDSSGEE 350
               K S  S + ++ +    + S +K   S  R R  +GEE
Sbjct: 438 HREEKRSKRSRSRSRDRKHKAERSSKKRSRSGSRSRQEAGEE 444

[Close]

BLAST of Sed0026946 vs. ExPASy TrEMBL
Match: A0A6J1CK04 (Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.4e-145
Identity = 303/368 (82.34%), Postives = 321/368 (87.23%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           +GFLYLRYVADPKTLWNWFEPYVKD+EEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR
Sbjct: 97  IGFLYLRYVADPKTLWNWFEPYVKDEEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 156

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 157 IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 216

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STRDSSPVRRTLPPS N +D  DD+RRSPSSRRSQSREHPDN ERSRDR++DRERSRDRD
Sbjct: 217 STRDSSPVRRTLPPSANDKDNGDDVRRSPSSRRSQSREHPDNGERSRDRDYDRERSRDRD 276

Query: 197 -DRDKGRDRDMD----RDRDRDRDRDREKYRDRERDRDRERD------------------ 256
            DRD+ RDRD D    RDRDRDRDRDREKYRDRERDRDR+RD                  
Sbjct: 277 HDRDRSRDRDHDRDRGRDRDRDRDRDREKYRDRERDRDRDRDRDRDRDRERERERERVRE 336

Query: 257 RERERDRERSYDYDRRTHYADRNSRREYESSSRDGGARHYRRSHSRSRSRSRSRSRSVQT 316
           RER+RDRERSYDYDRR+HYADR+SRR+YE SSRD G+RHYRR  SRSRSRSRSRSRS+QT
Sbjct: 337 RERDRDRERSYDYDRRSHYADRDSRRDYEKSSRDDGSRHYRR--SRSRSRSRSRSRSLQT 396

Query: 317 GNAHHKREPSPVRGGTTGKTSLISSNLAKLQDIYGDASEQKGDSSKGRI--RDSSGEEVI 360
            NAHH+R PSPVR G T KTS ISSNLAKL+DIYGD S+QKGD SK R+  RD SGEEV 
Sbjct: 397 VNAHHERVPSPVRDGNTDKTSNISSNLAKLKDIYGDVSDQKGDCSKERVPKRDGSGEEVF 456

[Close]

BLAST of Sed0026946 vs. ExPASy TrEMBL
Match: A0A0A0KT86 (Pre-mRNA-splicing factor 38 OS=Cucumis sativus OX=3659 GN=Csa_5G348070 PE=3 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 9.3e-145
Identity = 305/370 (82.43%), Postives = 323/370 (87.30%), Query Frame = 0


Query: 2   VPLLSDVERSHASS------YVGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTT 61
           +PL     RS+ S+       +GFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTT
Sbjct: 1   MPLAVRCLRSYGSNSIIHLVLIGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTT 60

Query: 62  MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTAR 121
           MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLPSKHSGVTGETHRIGSEDTAR
Sbjct: 61  MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 120

Query: 122 RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREH 181
           RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLP S N RD +DDLRRSPS RRSQSREH
Sbjct: 121 RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSIRRSQSREH 180

Query: 182 PDNRERSRDREFDRERSRDRDDRDKGRDRDMDRDRDRDRDRDREKYRDRERDRDRE---- 241
           PD+RERSRDREFDRERSRDR D D+ RDR  DRDRDR+ DRDREKYRDRERDRDRE    
Sbjct: 181 PDSRERSRDREFDRERSRDR-DYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKA 240

Query: 242 --RDRERERDRERSYDYDRRTHYADRNSRREYESSSRDGGARHYRRSHSRSRSRSRSRSR 301
             R+R+RERDRERSYDYDRRTHY+DR SRR++E SSRDGG RHYRR  SRSRSRSRSRSR
Sbjct: 241 RDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRR--SRSRSRSRSRSR 300

Query: 302 SVQTGNAHHKREPSPVRGGTTGKTSLISSNLAKLQDIYGDASEQKGDSSKGRIRDSSGEE 360
           S+QT   HH+REPSP RGGTT K S+ISSNLAKL+DIYGD SEQKGDSSK   RD SGEE
Sbjct: 301 SLQT---HHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEE 360

[Close]

BLAST of Sed0026946 vs. ExPASy TrEMBL
Match: A0A5D3D5T6 (Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00040 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 1.3e-141
Identity = 302/378 (79.89%), Postives = 320/378 (84.66%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           +GFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR
Sbjct: 97  IGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 156

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPVLRQVV+NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 157 IPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 216

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STRDSSPVRRTLP SVN RDI+DDLRRSPS+RRSQSREHPD+RERSRDRE+DRERSRDR+
Sbjct: 217 STRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDRE 276

Query: 197 ---------------------DRDKGRDRDMDRDRDRDR--------DRDREKYRDRERD 256
                                DR++ RDRD DRDRDR R        DRDREKYRDRERD
Sbjct: 277 YDRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRDREKYRDRERD 336

Query: 257 RDRE------RDRERERDRERSYDYDRRTHYADRNSRREYESSSRDGGARHYRRSHSRSR 316
           RDRE      R+R+RERDRERSYDYDRRTHY+DR SRR++E SSRDGG RHYRR  SRSR
Sbjct: 337 RDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRR--SRSR 396

Query: 317 SRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTSLISSNLAKLQDIYGDASEQKGDSSKGR 360
           SRSRSR RS+QT   HH+RE SP RGGTT K S+ISSNLAKL+DIYGD SEQKGDSSK  
Sbjct: 397 SRSRSRGRSLQT---HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKIN 456

[Close]

BLAST of Sed0026946 vs. ExPASy TrEMBL
Match: A0A5A7TWJ6 (Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00850 PE=3 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.8e-140
Identity = 302/388 (77.84%), Postives = 320/388 (82.47%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           +GFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR
Sbjct: 97  IGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 156

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPVLRQVV+NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 157 IPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 216

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STRDSSPVRRTLP SVN RDI+DDLRRSPS+RRSQSREHPD+RERSRDRE+DRERSRDR+
Sbjct: 217 STRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDRE 276

Query: 197 -------------------------------DRDKGRDRDMDRDRDRDR--------DRD 256
                                          DR++ RDRD DRDRDR R        DRD
Sbjct: 277 YDRERSRDRDYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRD 336

Query: 257 REKYRDRERDRDRE------RDRERERDRERSYDYDRRTHYADRNSRREYESSSRDGGAR 316
           REKYRDRERDRDRE      R+R+RERDRERSYDYDRRTHY+DR SRR++E SSRDGG R
Sbjct: 337 REKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTR 396

Query: 317 HYRRSHSRSRSRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTSLISSNLAKLQDIYGDAS 360
           HYRR  SRSRSRSRSR RS+QT   HH+RE SP RGGTT K S+ISSNLAKL+DIYGD S
Sbjct: 397 HYRR--SRSRSRSRSRGRSLQT---HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVS 456

[Close]

BLAST of Sed0026946 vs. ExPASy TrEMBL
Match: A0A1S3CIJ0 (Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103501359 PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 2.6e-139
Identity = 302/398 (75.88%), Postives = 320/398 (80.40%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           +GFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR
Sbjct: 97  IGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 156

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPVLRQVV+NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 157 IPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 216

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STRDSSPVRRTLP SVN RDI+DDLRRSPS+RRSQSREHPD+RERSRDRE+DRERSRDR+
Sbjct: 217 STRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDRE 276

Query: 197 -----------------------------------------DRDKGRDRDMDRDRDRDR- 256
                                                    DR++ RDRD DRDRDR R 
Sbjct: 277 YDRERSRDRDYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRD 336

Query: 257 -------DRDREKYRDRERDRDRE------RDRERERDRERSYDYDRRTHYADRNSRREY 316
                  DRDREKYRDRERDRDRE      R+R+RERDRERSYDYDRRTHY+DR SRR++
Sbjct: 337 RDRDRELDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDF 396

Query: 317 ESSSRDGGARHYRRSHSRSRSRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTSLISSNLA 360
           E SSRDGG RHYRR  SRSRSRSRSR RS+QT   HH+RE SP RGGTT K S+ISSNLA
Sbjct: 397 ERSSRDGGTRHYRR--SRSRSRSRSRGRSLQT---HHEREQSPARGGTTEKASVISSNLA 456

[Close]

BLAST of Sed0026946 vs. TAIR 10
Match: AT5G37370.1 (PRP38 family protein )

HSP 1 Score: 308.1 bits (788), Expect = 9.0e-84
Identity = 202/346 (58.38%), Postives = 239/346 (69.08%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           VGFLYLRYVAD KTLW W+EPY+KDDEEFSPGS+GRMTTMGVYVRDLLLG YYFDTLFPR
Sbjct: 98  VGFLYLRYVADAKTLWTWYEPYIKDDEEFSPGSNGRMTTMGVYVRDLLLGLYYFDTLFPR 157

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPV+RQ+V+NLEK+ LP+K SG TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 158 IPVPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRA 217

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STR SSPVRR  PP+   R+  D++++  S RRSQSR++                     
Sbjct: 218 STRGSSPVRRP-PPTGYDRNGGDEVQQR-SPRRSQSRDYYS------------------- 277

Query: 197 DRDKGRDRDMDRDRDRDRDRDREKYRDRERDRDRERDRERERDRERSYDYDRRTHYADRN 256
                           DRD DR++ R+RE+DR+RER R+R R+RER Y  DRR       
Sbjct: 278 ----------------DRDSDRQREREREKDRERERGRDRYRERERDYGNDRR------- 337

Query: 257 SRREYESSSRDGGARHYRRSHS-RSRSRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTS- 316
           SRR+Y+S SR       R  H  RSRSRSRSRSRSVQ      +REP+P R  +  + S 
Sbjct: 338 SRRDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSRSVQI-----EREPTPKRDSSNKEKSA 393

Query: 317 -LISSNLAKLQDIYGDASEQKGDSSKGRIRDSSGEEVIRLGGGSWK 360
             ++SNLAKL+D+YGDAS QK D   G  +DSS EEVI+LGG SW+
Sbjct: 398 VTVNSNLAKLKDLYGDASSQKRDEGFGTRKDSSSEEVIKLGGSSWR 393

[Close]

BLAST of Sed0026946 vs. TAIR 10
Match: AT5G37370.4 (PRP38 family protein )

HSP 1 Score: 308.1 bits (788), Expect = 9.0e-84
Identity = 202/346 (58.38%), Postives = 239/346 (69.08%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           VGFLYLRYVAD KTLW W+EPY+KDDEEFSPGS+GRMTTMGVYVRDLLLG YYFDTLFPR
Sbjct: 43  VGFLYLRYVADAKTLWTWYEPYIKDDEEFSPGSNGRMTTMGVYVRDLLLGLYYFDTLFPR 102

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPV+RQ+V+NLEK+ LP+K SG TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 103 IPVPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRA 162

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STR SSPVRR  PP+   R+  D++++  S RRSQSR++                     
Sbjct: 163 STRGSSPVRRP-PPTGYDRNGGDEVQQR-SPRRSQSRDYYS------------------- 222

Query: 197 DRDKGRDRDMDRDRDRDRDRDREKYRDRERDRDRERDRERERDRERSYDYDRRTHYADRN 256
                           DRD DR++ R+RE+DR+RER R+R R+RER Y  DRR       
Sbjct: 223 ----------------DRDSDRQREREREKDRERERGRDRYRERERDYGNDRR------- 282

Query: 257 SRREYESSSRDGGARHYRRSHS-RSRSRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTS- 316
           SRR+Y+S SR       R  H  RSRSRSRSRSRSVQ      +REP+P R  +  + S 
Sbjct: 283 SRRDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSRSVQI-----EREPTPKRDSSNKEKSA 338

Query: 317 -LISSNLAKLQDIYGDASEQKGDSSKGRIRDSSGEEVIRLGGGSWK 360
             ++SNLAKL+D+YGDAS QK D   G  +DSS EEVI+LGG SW+
Sbjct: 343 VTVNSNLAKLKDLYGDASSQKRDEGFGTRKDSSSEEVIKLGGSSWR 338

[Close]

BLAST of Sed0026946 vs. TAIR 10
Match: AT5G37370.2 (PRP38 family protein )

HSP 1 Score: 288.1 bits (736), Expect = 9.7e-78
Identity = 195/346 (56.36%), Postives = 232/346 (67.05%), Query Frame = 0


Query: 17  VGFLYLRYVADPKTLWNWFEPYVKDDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPR 76
           VGFLYLRYVAD KTLW W+EPY+KDDEEFSPGS+GRMTTMGVY        YYFDTLFPR
Sbjct: 98  VGFLYLRYVADAKTLWTWYEPYIKDDEEFSPGSNGRMTTMGVY--------YYFDTLFPR 157

Query: 77  IPVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRA 136
           IPVPV+RQ+V+NLEK+ LP+K SG TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRA
Sbjct: 158 IPVPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRA 217

Query: 137 STRDSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRD 196
           STR SSPVRR  PP+   R+  D++++  S RRSQSR++                     
Sbjct: 218 STRGSSPVRRP-PPTGYDRNGGDEVQQR-SPRRSQSRDYYS------------------- 277

Query: 197 DRDKGRDRDMDRDRDRDRDRDREKYRDRERDRDRERDRERERDRERSYDYDRRTHYADRN 256
                           DRD DR++ R+RE+DR+RER R+R R+RER Y  DRR       
Sbjct: 278 ----------------DRDSDRQREREREKDRERERGRDRYRERERDYGNDRR------- 337

Query: 257 SRREYESSSRDGGARHYRRSHS-RSRSRSRSRSRSVQTGNAHHKREPSPVRGGTTGKTS- 316
           SRR+Y+S SR       R  H  RSRSRSRSRSRSVQ      +REP+P R  +  + S 
Sbjct: 338 SRRDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSRSVQI-----EREPTPKRDSSNKEKSA 385

Query: 317 -LISSNLAKLQDIYGDASEQKGDSSKGRIRDSSGEEVIRLGGGSWK 360
             ++SNLAKL+D+YGDAS QK D   G  +DSS EEVI+LGG SW+
Sbjct: 398 VTVNSNLAKLKDLYGDASSQKRDEGFGTRKDSSSEEVIKLGGSSWR 385

[Close]

BLAST of Sed0026946 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 50.1 bits (118), Expect = 4.4e-06
Identity = 68/163 (41.72%), Postives = 88/163 (53.99%), Query Frame = 0


Query: 140 DSSPVRRTLPPSVNGRDISDDLRRSPSSRRSQSREHPDNRERSRDREFDRERSRDRDDRD 199
           +SSP       S    D+  D  +         R+   N++R R+++ DRE+SRDR DR+
Sbjct: 26  ESSPFHED-SKSRESHDLKKDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRDR-DRE 85

Query: 200 KGRDRDMDRDRDRDRDRDREKYRDRERDRDRERD------------RERERDRERSYDYD 259
           K RDRD DR+R +DR RDR  +RDR RDR RER             R R+RDR RS D D
Sbjct: 86  KSRDRDRDRERSKDRQRDRH-HRDRHRDRSRERSEKRDDLDDDHHRRSRDRDRRRSRDRD 145

Query: 260 RRTHYADRNSRREYESSSRDGGARHYRRSHSRSRSRSRSRSRS 291
           R   +  R+  R    S R   + H  +S  RSRSRSRSRS+S
Sbjct: 146 REVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSRSRSKS 185

The following BLAST results are available for this feature:

BLAST of Sed0026946 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875168.1	3.2e-147	85.83	pre-mRNA splicing factor SR-like 1 isoform X1 [Benincasa hispida] >XP_038875169....	[more]
XP_022141497.1	5.0e-145	82.34	pre-mRNA splicing factor SR-like 1 isoform X1 [Momordica charantia] >XP_02214149...	[more]
XP_011655154.1	4.3e-144	85.96	pre-mRNA splicing factor SR-like 1 isoform X1 [Cucumis sativus] >XP_011655155.1 ...	[more]
TYK18924.1	2.6e-141	79.89	pre-mRNA-splicing factor 38B [Cucumis melo var. makuwa]	[more]
KAA0046277.1	3.7e-140	77.84	pre-mRNA-splicing factor 38B [Cucumis melo var. makuwa]	[more]

BLAST of Sed0026946 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWB1	1.3e-82	58.38	Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 ...	[more]
Q6AXY7	2.9e-18	33.23	Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1	[more]
Q80SY5	8.4e-18	34.15	Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1	[more]
Q5VTL8	1.4e-17	34.64	Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1	[more]
Q6P7Y3	1.3e-15	32.16	Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1	[more]

BLAST of Sed0026946 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CK04	2.4e-145	82.34	Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 ...	[more]
A0A0A0KT86	9.3e-145	82.43	Pre-mRNA-splicing factor 38 OS=Cucumis sativus OX=3659 GN=Csa_5G348070 PE=3 SV=1	[more]
A0A5D3D5T6	1.3e-141	79.89	Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TWJ6	1.8e-140	77.84	Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3CIJ0	2.6e-139	75.88	Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103501359 PE=3 SV=1	[more]

BLAST of Sed0026946 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37370.1	9.0e-84	58.38	PRP38 family protein	[more]
AT5G37370.4	9.0e-84	58.38	PRP38 family protein	[more]
AT5G37370.2	9.7e-78	56.36	PRP38 family protein	[more]
AT1G60900.1	4.4e-06	41.72	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 17..81 e-value: 3.4E-14 score: 53.1
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 17..359
IPR024767	Pre-mRNA-splicing factor 38, C-terminal	PFAM	PF12871	PRP38_assoc	coord: 108..198 e-value: 1.5E-5 score: 25.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 332..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..286
None	No IPR available	PANTHER	PTHR23142:SF3	PRP38 FAMILY PROTEIN	coord: 17..359

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026946.1	Sed0026946.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome