Clc01G08220.2 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc01G08220.2
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Cytochrome b-c1 complex subunit Rieske, mitochondrial
Location	ClcChr01: 8408519 .. 8418998 (+)
Sequence length	1800
RNA-Seq Expression	Clc01G08220.2
Synteny	Clc01G08220.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCATAGACACGTATCAAAATACTCACCGTGTAGGGAAAACGAAGTCGAGGTCAAATTTTCTCCTGCAAATTGGGGAAAAAGAAGCCGATTTTGTCGCCTCCATTCGAATCCTCCATACCCTTCGAAGCCCTGTTTTCCATTTCATAAAATTTTCCCGGCGGAAGAGTTCGATTTTTCTTCACCAAGATGTTGAGGATTGCGGCACGAAGGCTTTCTTCACTCTCTTCTTCCCATTTCAGGCCCACTATTGCCTCTTCTTTGCCCAGTTCTCACAAGATCATCGATGGTTCTGATTCCGCCCCTTCCAATGATTTCAGATCCTTCAACACCTTCCCTTTTGGACCCCACTTTGATCGTAACTGTAGAGGTTAGAGTGCGCTTCCGTATTCTATGAAATAATTTTGTTATTTCTGGCTGTAGTTGATTTATGGCGTTTTTTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGCTAGAAAGGGAAATCCTTGTTTAGTGTTTTTGAGTTGTAGTTTTGTCACTTGCTTGTGTAGCTATCATTGGGTTTAGCTGTAGATGGGGATCGGGAATTGTGTTTATTGATCTGCTGTTTAGTCGCATTGATTATGTTGAATCATGTTTTGGATATTCATTTCTCGTTTGTGATAATAATGTGAAAAAGTGAGAGTGGGGTTGTGTTTTTGGGGGATATCACTTAGCCGAAGCAATCACTTCCCCGTGGTGTCTATGTTTGAATCTTCAACTGATTATTTTCTTAGTCTTTAACTTGTTATTACCATCATGTTTGCATATCCGTTTCTCATTCTGGCAACATTGAGAACGTGAAATGTTATTTACATTATGTATTTTTGCAGCAATATGATGGATCCCTTTGCTGAAGCAATCTCTAATTTTTTATTCCTAATTCTTTCACCGTTGCTCTCCAAAATTTTTAACTTTATGTTTGGTGGTCTACCACCCGAAACTGTATGCTTTTGTTCATATACTATACTTCCGAGACTTGTACTTCTCTCTATCTCTTTTAAAATTTTTCGTCTTTTTGATTGTGGAGACGCACACATGAACTAAAGAGCTGATGTTTCAAATGGTACATGGTTTTTGGTAATTTGATTTTGGTTGCTCTGGTGGCCTCTTTGAGTGTGTAAGTTTAAGTGTGACTTGTGAGAGTTATATTTCTTCTTTTTCTAATGGAGGTTAAAATTAGTCAGTTTAAGCATTTAAGGTTTCTGTTTGTTCGGTGCTGATAAAATTGTGCATTAATCCATTTTGCATACTCACCAAATCTTGATCAATGGATGTTAAGAAAATAGGCTTAATGTTCTTTTTGTTCGTATTGGTACAAGATTACAAAAGGAGTCTAAGACTAGCCGAAGAGACCTATCTTCAAAAGATGTATCATTTCGTTCGGTCCATAAGTGCCACAGTAACACTCTAGTGCACAACTACCCAAAATCCTAGCTTTGCCCATCAAGTTCCAACCATTAAGACCTTCAAGGAGCCAATCATCAATTATTCGAGGAGAAACAACATCAAACCCAACTTCTCAAAATAAAGCTCTAGGCCTTATAAGCTAAAGAGCAATGGAGAAACAAGTGGTAACATCTGTTGGATCACATCATCAGTATTAAGGCTTCTAAAAGACATAGACCAGACAAGGACTTCAACTTTCGTAGGGCACTTACTTTTCCAGACTAACTTGGGGGGGGGGGGGGGGGGTGTCATAGTTAGTACCAACTACAATTTTTTTTTATCCCCATCATTTTTAAGCTTGAAAATGATCTAGATATAGGCAAAGATAAAACAATGTTAAGATTTTCTTGGATTCAAAACAGATAGATTTTATCATTTGCGTGTCAAAAGTGAATTATCTCCTTGCCACGTGGAGAACCCTAACTAGACTTTTGTCCATACTTGTTAATACTGGCCTGCTGAGGACACACTACCATGAGGAAGAGGAGGGGAATGAGAGACCTCCTTGTCTAACACCCTTAATAGTTCTAGGAAGAACTCTCCTCAGCTATCAGCCAGTACCTTCACAACAATCGTATACAAGCTAGTAACCAAGCTGATTGGTTTGTGAAACCCTTCACACTTAGAGCATATTCCTTTCTTGGACATAAGACAAATATTGGTTTCATCCTCTAAATTAGCACTTCTCATGAAACTCACTACCTAACTTAACCGAAATCTTCTTGATCAAATCTCAATCTTTTGGATCAAATGCCAGAGTGGAACCATCATGCTTGAGATCCTTACTATTTATTGTAATTTGTCGTCAAAGCTGAAATAATCTCTCTTTATCTTTTCAACATAGAAGAAGCCTCTAACCTTTCCTTCCACAAACCTAGAGTAAACAGAAACAGAACCAAAAAAAAGTAGAGGAAGACAAGTTTTCCCCCTTAATTGCTGCCCCCTCGATCCGGTGTGTCATCCTCTCCTGAAAGAGACTCAATGACGTTCCTATTTCTTCTAATCTTGCAACTTCATGGTAGAATGAAGTGCTACGATCTCCCTCTCTCCCATTTTAACCCTAGAGAAATAGATACTCTCCCTCTCTAACTAATTCCTCAAACTTCCCCTTACCTGCACTTCTCTGAACTCTTCACTAAGAGTACCAAGGATAACTAATTTCTTAAGTTTTGCTTGAATGAAATAATGAAGAAATGACCACACTCCTAGGAAAATGGCATCCTGTAGTCTTGAATGCATAAAGAAAATATAATTGTTTATGAAAAAGCTTCAAACTTACTGCCTAGAATTTGTCAAAAGCTTAACCCTGCATATAGGTTATGGTTACAAACTCATTCAAACTTAAACACAGAAAATCACTAAATTTTGCACCAATAAGCAGGCAGCATAAATTTGAGGAAGATCTTGAGCATTCTGGCTCAGGTGATTGATTGGATGATTTCTTTTATATATTTTGTAACTCAGCCCTTTTATTATGAGTGATTATTCCTTTCTCTTGTGGTGAAGTATTATGATTTTATAGAAATATCTCTTTGCTAGGTTTTGCTTCTGATGCATTGACTTCAACAAAGGAAAACAACTTAGTTCCAGATGTTCCTGCTACTGTAGCAGCCGTTAAGAACCCTACTTCAAAGATAGTCTATGATGAATACAATCATGAGCGATTTCCTCCTGGTGACCCCAGCAAGCGGGCATTTGCTTATTTTGTCTTGTCAGGTGGTCGGTTTGTCTATGCTTCTTTGATCCGTCTCCTTGTTCTCAAGTTTGTTCTTAGCATGTCTGCCAGTAAGGACGTTCTTGCCCTTGCCTCACTTGAGGTTGACCTCTCAAGCATTGAGCCTGGTGCTACTGTGACGGTTAAGTGGCGTGGAAAACCAGTATTCATCAGAAGACGAACAGAGGAAGATATTAAGTTAGCAAATAGTGTCGATGTCGGATCTCTTCGTGACCCACAGCAGGATGGTGAGAGAGTTAAGGACCCAGAATGGCTTATTGTGATTGGCGTCTGCACACATCTTGGTTGCATTCCCTTGCCAAATGCTGGTGACTTTGGTGGGTGGTTTTGCCCATGCCATGGTTCCCATTACGATGTCTCTGGTAGGATCCGTAAAGGACCAGCACCCTACAATTTGGAGGTACCTACTTACACCTTTTTGGAAGATAACAAGCTTTTGATTGGTTAAGAAATCAAGCTATTTTTCTGGGTTTGTAGTGGTTTTGGAACCTTCATCAATGATAATGTCGAAGATTTGTTGCAGACATATTTTATTTTTCTACTCAATTTCTTTGAGTTGATCTTTATGTAATGAGAATACTGTAACTCCCGTATCTTGGTGCATGAATGAATCTGAATAAGTTGCTTGAATGGGGTGTTGCCTTCTTTCGATTTTGGTTGGTAATAGACTTTTGATAGTGAAATAGCCACCAAATTTTCATTGTATGGTTTTTGTGATGAAGCAAATGAGCAAAATTTCTTTCATTTCTCTGACGAAAGCTCAGTTCGGTTTATGGACTTGCTAATTAATTGAGCATTTTGTTGCATATTTCTTCTTCTTCTTAATTGAGCATTTGGTTGCATATTTCTTCTCGATGGTAGAGTAGTTCTAGAGAGCATTTTGGGGCTAAATGAGAACTTTGTACTCAGTGTTAAAAGTACTTCAAACTTTCAAAAGTTTGAAAATAATTTTAAATTTTAAAAGAGTTAAAAAATACCCTTACTTTTATATGGAAAGAAAACGTTAATACTGTGTACTTTTCTATTTTCTCTTTTTTCTCCCCTCTTTTTTAGCACCCCTTACTCTCCCTATTTTTTTTTTTTTTTTGGGTTAATTGGTAACAAGGAATTTTTTTTTTCTTAATTTGTTGACATTTGTTTATCAGGAAAAAAAATAAATAAAATTGTAGTGTATCCAAATACTATTTTTAGTAATTGAGTGTGTCCAAGTACTATTTTTTTATTTAGCTATTTATCGTTTTTGTATATTTTAAGGGGAGATTTTGATTGTGTAATTTTATGAGGTTTTTTTAGATTTTATGTGTTAACTTAAAATTTTTGTTGCTAAGAAAATTGTGTAAGAATTAGACAAATAAGAGAAAAATGGGAGAATCTATATGAAAAAGAAGATGAGGATATCTATATAATTTGTTTTAAAATTAGTTGTTTTCGAACTCAAGAAAACTTCAAATAAATTGATCATTATAGTAATGGTAGGAGCATTTTTTAATTTTCTTTTTTTAGTTTAAGGGTATTTTTTATACTTTTGAAAGTTTGGAGATACTTTTAAACAAAATACTAATGACTTTCATCCACGACTAACCGTAAGAGTCATTCTGAATTCTTTTTTAAAATTTAAGGATATTTTTTAAACTTTTGAAAGCTTCAGGAATATTTTTGACATAGAATATCAAAAACATATATATCTTTTTTTAATAATTTAGCATTTTTTTACCTTTAAATCATCATCATTATTACTATATGTTTTAAAAAATAAAAATTGTATTGTCAGCATTACCATTTTATAGTTATGGAGTTAATTGGGGCTAAATTAAACTTTGGAGGATTTAATTGTAAGACCTTGAATTTTAAGGACTAAATTGACTTATTTTCCAAATCACACAAGACAAAAAGTAATTTACCAAAAAAATTCTAATGAGAAATTGGTCCTCTACTTTTAAAATATCAATCTTGGTCACTACTCTTAAAAAAATACCATTTGAATCAAAGTTGAAAGTATGGAAACTAAAATATATATTTTGAAAGGATAAGATTAAAATGAACAAAATTGATAGTTGGTGCGGAACTCGCACACATTGTGGGCCTTTAGTGGGCTCTCTACTAACTTACTCCTTTGGTTTGACATTGTGTCCCAAGTTGACCTGCTTGAGAGTACTTGCACTGGTGTGGTGTCAAGCCAACCACATTCTAATACCTAAATTAGCATAAGGAGTGTTCATGTAAACATAGAGAGTAAGGTTAGAATTCTCCTTGGGAGTTTTCTTACTTCTTCCCTTTATGAGGTTGTCAAATGTGGTTATTTATAATGTCTTTCATCTAACATTTGTCTGTGGTTGAGTGTAGCGTTGACAATGTTAGGATGGTTGCAGCTTTTGAGGTTACAAAGCACCAAGGTTGAGCTTGACTCAATTATTTATAGATTAGTATAATTCCTTCGACTTGACTAGTCGGCCTTGCCTAGAACCTAAGGGTGTGACTTTTTCCTTCTGGGACATGATACCTCTTAGTTTCCCTTAACTTGAGCTCCCCTATGAGCTTTTGAGCCTTGCTTGGGGCAACGATCAAAATAGAGTATAAACACCGAAGTAGTATTTAAACTTAAAAAATAGAACAAAATGTAAAAGATCTTGAATTTAAATGGCCATACAACGTTTAAACTTAGATAAATGTGGCTTTCGAAGTAAGTTAAGGATGTTTTTAAGTTTTAGTTTACAAGCATGATTGAAAAGAACATGGAAATATGTATGAAAACAATTGATCCGTTAGCTAAAACGAAGATGTATAGACGAATATATGACTAAAACAAAATTGCAAAGTGAGAGCTATGCAGTTGCATACCTCAAACTTAGCAATCGTTACACCTTTTGTTGCACGAATGTTGATTTTGTTTTGGTATCTTCGTTGATACAATTTTGTCTTAGCTAAATGACCACTTGTCTTTATACGTTTTTTCATGTCTTTTCCAACCTTACTTATAAATTGAGCAAAATGTTAAAGCATCTCTACTTTTAAATGACCACACAAAGTTTAACTTAAATCATTTCTAGTATTTGATGTTTAGGTAATGTAAGAAGAAACAAGAGAGGAGAAATGGAGAAGTGATTGATTTGAAATTGAGGGCAACGGGGTATTTCACATCTCATAAAGGAAAAAAATCATGTTTTTAAAAAAGATGTCAATTTGATATAATTTTTTGGGTTTTGGGTTGTTTTGGTCAATTTTCTTCAAAATTTCAACAATCAAATAGACACTCACTTTGCTCTAACTCTCATTTTTATGTGTTAGCGTAGAAAAATATGTACTCTATCTCTATCATATTAAAAGGGGTTATGTAGGGAGAATCTTTATGTGTTCATCTTGCTTTTTTATATTACTTTTCGTCGTGACTTTTCGAATGTAAAATAATTATTTTTTAAAAAATAATTAGAACTACGCATTTTCATGCGCGTCGTGTTTCTCGACTTGTTGTACTAAAAAGAAATAAATACTTGCCCTAACTAGTAATAAAAAAAATTTGCAAAAAAAGAAAATTAAAAAACCATAACGATAGCTGAAGGAAGCAAAACAAGTTTGAGGTCAAATATAGGGGTCGGTCATGAACCCTCTACGAATCGGGGAAAAGGCCGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATCGCCTTCTTCTGAGTTTCTCAATATCCCTCCAAATCGAAAACCTGAAGGTTGACGAAGATGTTGAGGATTGCAGCTCGAAGGCTCTCGTCACTCTCTTCTTCGCATTTCAGGCCCACTATTGCCTCTTCTTTGCCCGGTTCTCACAACATCATTGATTCCACTGATTCCGCCCCTTCCAATGATTTCAGATCCGGCGGATTCTTCAACACTTTCCCCATCGGACCTCACTTTGATCGCAATTCTAGAGGTTACAGCTTGTTTCTTTATTTCTGAATTCCTGTTCCTTGTCGATTCATTTCGTTTTTCTAGGGTTTGTTTTATGCCTTCTTCGCTGTTTGAGAGCGCAAAATTCAGTATCTGTCTTGCAGTTTCTATTACGGCGTTTAATCTAGAATGGGGATTGATATTCATCTTTGTTGATCCACTGTTTGATCTCTTTTGATTGATTTGAATAATGTTTTTTTGCATATTAGTTTCTCGTTTTGTAAATAATTTTAAAATGTGAAAGTTGTTTTCTGGTACTTTCGGGGCATTTTAACGGTATCATCTTCACCGAAACAATCGCTTCTTCTTCTTTCGTTTGTAAATCTTCCACCGTTTCATTTCATACTTTTTAACTTTATGTTGGTCTTTTCTGTTATATCCACTGGAAACTACGTTATATCATTCATATGCTATATTGCCGATAATTATTCTTCTAGTGCAGAAGTTTTTGTGTGAATTGGTCAGTGGTATCATATCCTAGTTTAATTCCATATTTTATTTGCTCAGAATTTTTTGAATTGGTTCTTGTAGAAGCTCATCAAATCTCCCAATATGGGATCTCGATTAGCATATTTATTTTAATTTATTTTTTCTGGCTGTTTGTTGTGTATATTTATCGTTGTTGAAAGAGTGTAGTTATCGACGAAGTTTAAGCCATTGTCTTCCCCTTGTAGAGTTTTTTTGTTATTATTGGGAAGAATTTCGATCAATTTCTTGAATTTGAATATAGATATACTATGAATAAAATTTGCTAGCAGTATTTTATATTTTGCTATCAGAAATAGAAATGTTTCTGATAAATTAATTTACAGTATTGGATAAGAATGTAAGAGGGGATAATTGATCCTGTTACTTGTATGAAATAATGTAAAATTAGTATAAGAAAAAATGAACTAGACTATAATTACAAAAGAACTTCTTTCTTAGGCACTATAAAGAAGAAGTGATTGGGGAATTTCAAACGCATCCATTCATAAGAATTTCATGTTTTCAGTATTATAGTGTGTTTCAATTAGGTGGTGACACATTTCACCTTAGTTACAAGCTTTGTACAATCTGTTATTCTTTCTATTCTTTCCTTCAATTCAAATAAGGAAGGAAGATGTATTTGTACATTGTTACAAAAGAACTCAAAAGTGTAGGAGACCTTCTGGTTTCTTTCCTTCCAGGTTTCCCAAACCAAAGCCCGAGTCACACATCTCCACAAAAATCTAGCTTTTCTTCTGAGGCTCCACCCATTTAAGGTGTATAATAGCCACTCCAAATCCGACTCTGGAGTACAAAAGAATGTTTTTTAATACTGAGGCAAAAGGACACTGGAGGAATAGGTGCTCTGCATTTTCTTCTTCCCTTGAGCACAAGCGCAAACTGATGGAGAAAGTTTCCAATTGGCAAGCTTCCTTTGTACTCCAAAGGAAGACTTTTATCTTCTTTGGGACATTAAACTTCCAAATCACATCAATCATAGGCTTATAAGAGATGTTTCAACTAATCTTACAGGATAATCCGTCTGATCCTACAACATTTGGTGTCAAAGAAACCCATAGGATATCAAATCCTAGGTAGGTGGCTACTATGAATTGAACCCATGACCCCATAGCCCTTTGACCATTTTTTGATGTGCCACTACCACTAGACCAACCTAGATGGTTGCTTATGAGAGATGTTTCAGTCAACTTTATGAAAGTAGATTTTGTTGAAGTAACCCCAGATTTCTCGAAGGGATCGAAAGTTCTGTCCATACCATCACCCAGCCTTACAGTATCAACCAATATCAACCAGATCCAGCTTTCAAATTCCTATCCATTATATCTCTTCTAAATCCAAGATTCCAATCATTGTTCTCCAAGTAACACTCTTCAACTGTGGCATGCTTTTTATGAGATATGAGGAAGAAATCATGGAATGATTCCTCCAAGGAAAAGATCCCATCACCCATTTACCTTGCAATGTCGAAACAAGCTCTGCCTTTTGATATACCTTTTAGTGGAAGGAAAAATCCGCCCTAGCGGCTCACACCTGTGAATACTAAAGATAATCCTTTGTGAAATAGCTTCAAAGTTTTTGCTCAAAAAGATTAGATCACTTTAATCCCATTCCATGGGACCAGAAGATAAATTTATTCAAACTCACATTGAAAATTGTTAAAATTTGCTCTTGAAATTAGGTGTAGCAAGAACATTTACACAATACTTTTGCTATCTTGAGAATTGGTCTCTATGTCTCTGCGATGGTTGGTTTGTATTACACTCTTGCAAAATTGACTGGCCATTGTCGCTGAACTTTTTGGTTCTGGATATTTAGACAGATTCCTTCTGTATTCACAACTAATTTGTAAATCCTCTATGCACATGACTGACTACTTATGGAGTTTGACTCCCTAGCTTTGTACGGAACTCGAGGATAAAAATATCGGTAAGAAATCTATTAGCACACTGGAAATGGCCTGGAGGCCTGCTTTTCTGATTGTGCATTTTATAATATTGGTTTTATATCTGATACCAATTAAACCAAAAAAAAAGGCAATTTAATGGTTATGGTTTGGAATCTGTCTTTTAACCCTTAATCATTTTAGAGGCTGTGCATGAGCTTCTCAATTATAATTTGTGATTCATCACCATATGCATGACTATTTGTTTCCGCTGTGGCATGGTTTCATGATTTTATGGAAATGACTCTCTGCTAGGTTTTGCTTCTGATGCATTGACCTCAACCAAGGATGATGGCTTAATTCTGGATATTCCTGCAACTGTAGCTGCCATTAAGAACCCTTCTTCAAAGATAGTCTATGACGACTACAATCATGAGCGATTTCCTCCTGGTGACCCCAGCAAGCGCGCATTTGCTTATTTTGTATTATCAGGTGGTCGTTTTGTCTATGCTTCTTTGATTCGTCTCCTTGTTCTCAAGTTTGTCCTCAGCATGTCAGCCAGTAAGGATGTTCTTGCCCTGGCCTCACTTGAGGTTGACCTTTCAAGCATCGAACCTGGTTCTACGGTGACAGTTAAGTGGCGTGGAAAACCAGTATTCATCAGGCGACGAACTGAGGACGATATTAAGTTAGCAAATAGTGTGGACGTTGGATCTCTTCGTGACCCTCAGCAGGATGAAGAGAGAGTTAAGGATCCAGAATGGCTTATTGTGATCGGTGTCTGCACGCATCTTGGTTGCATTCCCTTGCCAAATGCTGGTGATTATGGTGGGTGGTTTTGTCCATGCCATGGTTCTCATTACGACGTCTCTGGCAGAATCCGTAAAGGGCCAGCACCCTACAATTTGGAGGTACCCACCTACACCTTTTTGGATGAGAACAAGCTCTTGATTGGTTAA

mRNA sequence

AAAGCATAGACACGTATCAAAATACTCACCGTGTAGGGAAAACGAAGTCGAGGTCAAATTTTCTCCTGCAAATTGGGGAAAAAGAAGCCGATTTTGTCGCCTCCATTCGAATCCTCCATACCCTTCGAAGCCCTGTTTTCCATTTCATAAAATTTTCCCGGCGGAAGAGTTCGATTTTTCTTCACCAAGATGTTGAGGATTGCGGCACGAAGGCTTTCTTCACTCTCTTCTTCCCATTTCAGGCCCACTATTGCCTCTTCTTTGCCCAGTTCTCACAAGATCATCGATGGTTCTGATTCCGCCCCTTCCAATGATTTCAGATCCTTCAACACCTTCCCTTTTGGACCCCACTTTGATCGTAACTGTAGAGGTTTTGCTTCTGATGCATTGACTTCAACAAAGGAAAACAACTTAGTTCCAGATGTTCCTGCTACTGTAGCAGCCGTTAAGAACCCTACTTCAAAGATAGTCTATGATGAATACAATCATGAGCGATTTCCTCCTGGTGACCCCAGCAAGCGGGCATTTGCTTATTTTGTCTTGTCAGGTGGTCGGTTTGTCTATGCTTCTTTGATCCGTCTCCTTGTTCTCAAGTTTGTTCTTAGCATGTCTGCCAGTAAGGACGTTCTTGCCCTTGCCTCACTTGAGGTTGACCTCTCAAGCATTGAGCCTGGTGCTACTGTGACGGTTAAGTGGCGTGGAAAACCAGTATTCATCAGAAGACGAACAGAGGAAGATATTAAGTTAGCAAATAGTGTCGATGTCGGATCTCTTCGTGACCCACAGCAGGATGGTGAGAGAGTTAAGGACCCAGAATGGCTTATTGTGATTGGCGTCTGCACACATCTTGGTTGCATTCCCTTGCCAAATGCTGGTGACTTTGGTGGGTGGTTTTGCCCATGCCATGGTTCCCATTACGATGTCTCTGGTAGGATCCGTAAAGGACCAGCACCCTACAATTTGGAGATGTTGAGGATTGCAGCTCGAAGGCTCTCGTCACTCTCTTCTTCGCATTTCAGGCCCACTATTGCCTCTTCTTTGCCCGGTTCTCACAACATCATTGATTCCACTGATTCCGCCCCTTCCAATGATTTCAGATCCGGCGGATTCTTCAACACTTTCCCCATCGGACCTCACTTTGATCGCAATTCTAGAGGTTTTGCTTCTGATGCATTGACCTCAACCAAGGATGATGGCTTAATTCTGGATATTCCTGCAACTGTAGCTGCCATTAAGAACCCTTCTTCAAAGATAGTCTATGACGACTACAATCATGAGCGATTTCCTCCTGGTGACCCCAGCAAGCGCGCATTTGCTTATTTTGTATTATCAGGTGGTCGTTTTGTCTATGCTTCTTTGATTCGTCTCCTTGTTCTCAAGTTTGTCCTCAGCATGTCAGCCAGTAAGGATGTTCTTGCCCTGGCCTCACTTGAGGTTGACCTTTCAAGCATCGAACCTGGTTCTACGGTGACAGTTAAGTGGCGTGGAAAACCAGTATTCATCAGGCGACGAACTGAGGACGATATTAAGTTAGCAAATAGTGTGGACGTTGGATCTCTTCGTGACCCTCAGCAGGATGAAGAGAGAGTTAAGGATCCAGAATGGCTTATTGTGATCGGTGTCTGCACGCATCTTGGTTGCATTCCCTTGCCAAATGCTGGTGATTATGGTGGGTGGTTTTGTCCATGCCATGGTTCTCATTACGACGTCTCTGGCAGAATCCGTAAAGGGCCAGCACCCTACAATTTGGAGGTACCCACCTACACCTTTTTGGATGAGAACAAGCTCTTGATTGGTTAA

Coding sequence (CDS)

ATGTTGAGGATTGCGGCACGAAGGCTTTCTTCACTCTCTTCTTCCCATTTCAGGCCCACTATTGCCTCTTCTTTGCCCAGTTCTCACAAGATCATCGATGGTTCTGATTCCGCCCCTTCCAATGATTTCAGATCCTTCAACACCTTCCCTTTTGGACCCCACTTTGATCGTAACTGTAGAGGTTTTGCTTCTGATGCATTGACTTCAACAAAGGAAAACAACTTAGTTCCAGATGTTCCTGCTACTGTAGCAGCCGTTAAGAACCCTACTTCAAAGATAGTCTATGATGAATACAATCATGAGCGATTTCCTCCTGGTGACCCCAGCAAGCGGGCATTTGCTTATTTTGTCTTGTCAGGTGGTCGGTTTGTCTATGCTTCTTTGATCCGTCTCCTTGTTCTCAAGTTTGTTCTTAGCATGTCTGCCAGTAAGGACGTTCTTGCCCTTGCCTCACTTGAGGTTGACCTCTCAAGCATTGAGCCTGGTGCTACTGTGACGGTTAAGTGGCGTGGAAAACCAGTATTCATCAGAAGACGAACAGAGGAAGATATTAAGTTAGCAAATAGTGTCGATGTCGGATCTCTTCGTGACCCACAGCAGGATGGTGAGAGAGTTAAGGACCCAGAATGGCTTATTGTGATTGGCGTCTGCACACATCTTGGTTGCATTCCCTTGCCAAATGCTGGTGACTTTGGTGGGTGGTTTTGCCCATGCCATGGTTCCCATTACGATGTCTCTGGTAGGATCCGTAAAGGACCAGCACCCTACAATTTGGAGATGTTGAGGATTGCAGCTCGAAGGCTCTCGTCACTCTCTTCTTCGCATTTCAGGCCCACTATTGCCTCTTCTTTGCCCGGTTCTCACAACATCATTGATTCCACTGATTCCGCCCCTTCCAATGATTTCAGATCCGGCGGATTCTTCAACACTTTCCCCATCGGACCTCACTTTGATCGCAATTCTAGAGGTTTTGCTTCTGATGCATTGACCTCAACCAAGGATGATGGCTTAATTCTGGATATTCCTGCAACTGTAGCTGCCATTAAGAACCCTTCTTCAAAGATAGTCTATGACGACTACAATCATGAGCGATTTCCTCCTGGTGACCCCAGCAAGCGCGCATTTGCTTATTTTGTATTATCAGGTGGTCGTTTTGTCTATGCTTCTTTGATTCGTCTCCTTGTTCTCAAGTTTGTCCTCAGCATGTCAGCCAGTAAGGATGTTCTTGCCCTGGCCTCACTTGAGGTTGACCTTTCAAGCATCGAACCTGGTTCTACGGTGACAGTTAAGTGGCGTGGAAAACCAGTATTCATCAGGCGACGAACTGAGGACGATATTAAGTTAGCAAATAGTGTGGACGTTGGATCTCTTCGTGACCCTCAGCAGGATGAAGAGAGAGTTAAGGATCCAGAATGGCTTATTGTGATCGGTGTCTGCACGCATCTTGGTTGCATTCCCTTGCCAAATGCTGGTGATTATGGTGGGTGGTTTTGTCCATGCCATGGTTCTCATTACGACGTCTCTGGCAGAATCCGTAAAGGGCCAGCACCCTACAATTTGGAGGTACCCACCTACACCTTTTTGGATGAGAACAAGCTCTTGATTGGTTAA

Protein sequence

MLRIAARRLSSLSSSHFRPTIASSLPSSHKIIDGSDSAPSNDFRSFNTFPFGPHFDRNCRGFASDALTSTKENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGATVTVKWRGKPVFIRRRTEEDIKLANSVDVGSLRDPQQDGERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEMLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDRNSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG

Homology

[Close]

BLAST of Clc01G08220.2 vs. NCBI nr
Match: KAG5403153.1 (hypothetical protein IGI04_009272 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 738.4 bits (1905), Expect = 4.3e-209
Identity = 385/564 (68.26%), Postives = 439/564 (77.84%), Query Frame = 0


Query: 1   MLRIAARRLSSLSSSHFRPTIASS--LPSSHKIIDGSDSA------PSNDFRSFNTFPFG 60
           MLR+A RRL S+S    R + A+S  L   H I +G DS+      PS D  SFN++   
Sbjct: 1   MLRVAGRRLFSVSQ---RSSTATSFVLSRDHPISNGGDSSSTHRSVPSADLSSFNSY--- 60

Query: 61  PHFDRNCRGFASDALTSTKENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRA 120
                  RGF+S  +T   E     +VPATV AVK P SKIVYD++NHER+PPGDPSKRA
Sbjct: 61  --HRSLIRGFSSQVITQGNEIGFASEVPATVEAVKTPNSKIVYDDHNHERYPPGDPSKRA 120

Query: 121 FAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGATVTVKWRGK 180
           FAYFVLSGGRFVYAS++RLLVLK ++SMSASKDVLALASLEVDL SIEPG TVTVKWRGK
Sbjct: 121 FAYFVLSGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGK 180

Query: 181 PVFIRRRTEEDIKLANSVDVGSLRDPQQDGERVKDPEWLIVIGVCTHLGCIPLPNAGDFG 240
           PVFIRRRTE+DIKLANSVD+GSLRDPQ+D  RVK+PEWL+V+GVCTHLGCIPLPNAGD+G
Sbjct: 181 PVFIRRRTEDDIKLANSVDLGSLRDPQEDAVRVKNPEWLVVVGVCTHLGCIPLPNAGDYG 240

Query: 241 GWFCPCHGSHYDVSGRIRKGPAPYNL--------------------EMLRIAARRLSSLS 300
           GWFCPCHGSHYD+SGRIRKGPAPYNL                    EMLR+A RRL S+S
Sbjct: 241 GWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKFGHYTLRAEMLRVAGRRLFSVS 300

Query: 301 SSHFRPTIASSLPGSHNIIDSTDSAPSND-FRSGGFFNTFPIGPHFDRNSRGFASDALTS 360
                 T + +L   H + D  DS+ S+   RS         G +     RGF+S  LT 
Sbjct: 301 QRSTNAT-SFALSRDHTLSDGGDSSSSSSATRSVPSPALSRFGSYHRSLVRGFSSQVLTQ 360

Query: 361 TKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFVLSGGRFVYASLI 420
             + G   + PATV A+K P+SKIVYDD+NHER+PPGDPSKRAFAYFVLSGGRFVYAS++
Sbjct: 361 GNEVGFGSE-PATVEAVKTPNSKIVYDDHNHERYPPGDPSKRAFAYFVLSGGRFVYASVL 420

Query: 421 RLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANS 480
           RLLVLK ++SMSASKDVLALASLEVDL SIEPG+TVTVKWRGKPVFIRRRTEDDIKLANS
Sbjct: 421 RLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANS 480

Query: 481 VDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDVSGRI 536
           VD+GSLRDPQ+D  RVK+PEWL+V+GVCTHLGCIPLPNAGDYGGWFCPCHGSHYD+SGRI
Sbjct: 481 VDLGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGRI 540

[Close]

BLAST of Clc01G08220.2 vs. NCBI nr
Match: KAF3507213.1 (hypothetical protein F2Q69_00000537 [Brassica cretica])

HSP 1 Score: 693.3 bits (1788), Expect = 1.6e-195
Identity = 367/566 (64.84%), Postives = 419/566 (74.03%), Query Frame = 0


Query: 1   MLRIAARRLSSLSSSHFRPTIASSLPSSHKIIDG--------SDSAPSNDFRSFNTF--- 60
           MLR+A RRL S+S      T + +L   H + +G        + S PS D   F ++   
Sbjct: 1   MLRVAGRRLFSVSQRSTNAT-SFALSRDHTLSEGGGDSSSSATRSVPSPDLSRFGSYHLV 60

Query: 61  ---PFGP----HFDRNCRGFASDALTSTKENNLV------------PDVPATVAAVKNPT 120
              P  P     F  + R   S  L+     +LV               PATV AVK P 
Sbjct: 61  RGLPPSPVLWIDFSFHFRSVPSPDLSRFGSYHLVRGFSSQGNEVGFGSEPATVEAVKTPN 120

Query: 121 SKIVYDEYNHERFPPGDPSKRAFAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALA 180
           SKIVYD++NHER+PPGDPSKRAFAYFVLSGGRFVYAS++RLLVLK ++SMSASKDVLALA
Sbjct: 121 SKIVYDDHNHERYPPGDPSKRAFAYFVLSGGRFVYASVLRLLVLKLIVSMSASKDVLALA 180

Query: 181 SLEVDLSSIEPGATVTVKWRGKPVFIRRRTEEDIKLANSVDVGSLRDPQQDGERVKDPEW 240
           SLEVDL SIEPG TVTVKWRGKPVFIRRRTE+DIKLANSVD+GSLRDPQ+D  RVK+PEW
Sbjct: 181 SLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDLGSLRDPQEDAVRVKNPEW 240

Query: 241 LIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEMLRIAARRLSS 300
           L+V+GVCTHLGCIPLPNAGD+GGWFCPCHGSHYD+SGRIRKGPAPYNLE + +      S
Sbjct: 241 LVVVGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEDI-VPMSLFYS 300

Query: 301 LSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDRNSRGFASDALT 360
           L  S+    I                          F  +  +  H      GF+S  LT
Sbjct: 301 LHCSYTNGWIPF------------------------FMYSLLMVSHL-----GFSSQVLT 360

Query: 361 STKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFVLSGGRFVYASL 420
              + G   + PATV A+K P+SKIVYDD+NHER+PPGDPSKRAFAYFVLSGGRFVYAS+
Sbjct: 361 QGNEVGFGSE-PATVEAVKTPNSKIVYDDHNHERYPPGDPSKRAFAYFVLSGGRFVYASV 420

Query: 421 IRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLAN 480
           +RLLVLK ++SMSASKDVLALASLEVDL SIEPG+TVTVKWRGKPVFIRRRTEDDIKLAN
Sbjct: 421 LRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIKLAN 480

Query: 481 SVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDVSGR 537
           SVD+GSLRDPQ+D  RVK+PEWL+V+GVCTHLGCIPLPNAGDYGGWFCPCHGSHYD+SGR
Sbjct: 481 SVDLGSLRDPQEDAVRVKNPEWLVVVGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGR 534

[Close]

BLAST of Clc01G08220.2 vs. NCBI nr
Match: XP_038874657.1 (cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 543.9 bits (1400), Expect = 1.6e-150
Identity = 267/277 (96.39%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDR 319
           MLRIAARRLSSLSSS  RPTIASSLPGSH+IIDS+DSAPSNDFRS GFFNTFPI PHFDR
Sbjct: 1   MLRIAARRLSSLSSSRLRPTIASSLPGSHSIIDSSDSAPSNDFRSAGFFNTFPIRPHFDR 60

Query: 320 NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 379
           NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV
Sbjct: 61  NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 120

Query: 380 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 439
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 440 RRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCP 499
           RRTEDDIKLANSVD+GSLRDPQQD ERVKDPEWL+VIGVCTHLGCIPLPNAGDYGGWFCP
Sbjct: 181 RRTEDDIKLANSVDIGSLRDPQQDGERVKDPEWLVVIGVCTHLGCIPLPNAGDYGGWFCP 240

Query: 500 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CHGSHYD+SGRIRKGPAPYNLEVPTYTFLDENKLLIG
Sbjct: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 277

[Close]

BLAST of Clc01G08220.2 vs. NCBI nr
Match: KAF3507222.1 (hypothetical protein F2Q69_00000538 [Brassica cretica])

HSP 1 Score: 534.6 bits (1376), Expect = 9.5e-148
Identity = 313/558 (56.09%), Postives = 363/558 (65.05%), Query Frame = 0


Query: 1   MLRIAARRLSSLSSSHFRPTIASS--LPSSHKIIDGSDSA------PSNDFRSFNTFPFG 60
           MLR+A RRL S+S    R + A+S  L   H I +G DS+      PS D  SFN++   
Sbjct: 1   MLRVAGRRLFSVSQ---RSSTATSFVLSRDHPISNGGDSSSTPRSVPSADLSSFNSY--- 60

Query: 61  PHFDRNCRGFASDALTSTKENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRA 120
                  RGF+S  +T   E     +VPATV AVK P SKIVYD +NHER+PPGDPSKRA
Sbjct: 61  --HRSLIRGFSSQVITQGNEIGFASEVPATVEAVKTPNSKIVYDNHNHERYPPGDPSKRA 120

Query: 121 FAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGATVTVKWRGK 180
           FAYFVLSGGRFVYAS++RLLVLK ++SMSASKDVLALASLEVDL SIEPG TVTVKWRG 
Sbjct: 121 FAYFVLSGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRG- 180

Query: 181 PVFIRRRTEEDIKLANSVDVGSLR-DPQQDGERVKDPEWLIVIGVCTHLGCIPLPNAGDF 240
            +         + L  S D  S R +   D   +   + L      +HL    L     F
Sbjct: 181 XILQLPSLHHPLTLGLSEDAASCRAEAFLDFTEIIYGDLLCTFPRSSHLQWRRLV----F 240

Query: 241 GGWFCP-CHGSHYDVSGRIRKGPAPY------------NLEMLRIAARRLSSLSSSHFRP 300
               C  C    + +       P PY            NLE   +  RR     S  F  
Sbjct: 241 HPQICSLCRSFIFQL-----LPPEPYKRFRSSYLRDDLNLECSFVWQRR-----SYAFGV 300

Query: 301 TIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDRNSRGFASDALTSTKDDGLI 360
                 P  H II+                              GF+S  +T   + G  
Sbjct: 301 CCVLGNPLMHLIIEF-----------------------------GFSSQVITQGNEIGFA 360

Query: 361 LDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFVLSGGRFVYASLIRLLVLKF 420
            ++PATV A+K P+SKIVYD++NHER+PPGDPSKRAFAYFVLSGGRFVYAS++RLLVLK 
Sbjct: 361 SEVPATVEAVKTPNSKIVYDNHNHERYPPGDPSKRAFAYFVLSGGRFVYASVLRLLVLKL 420

Query: 421 VLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLR 480
           ++SMSASKDVLALASLEVDL SIEPG+TVTVKWRGKPVFIRRRTEDDIKLANSVD+GSLR
Sbjct: 421 IVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDLGSLR 480

Query: 481 DPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDVSGRIRKGPAPY 537
           DPQ+D  RVK+PEWL+V+GVCTHLGCIPLPNAGDYGGWFCPCHGSHYD+SGRIRKGPAPY
Sbjct: 481 DPQEDAVRVKNPEWLVVVGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPY 506

[Close]

BLAST of Clc01G08220.2 vs. NCBI nr
Match: XP_008465498.1 (PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis melo])

HSP 1 Score: 533.9 bits (1374), Expect = 1.6e-147
Identity = 262/277 (94.58%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDR 319
           MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDS D   SNDFRS GFFNTFPI PHFDR
Sbjct: 1   MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSAD---SNDFRSAGFFNTFPIRPHFDR 60

Query: 320 NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 379
           NSRGFASDAL STKDDGLI+DIPATVAA+KNPSSKIVYDDYNHERFPPGDPSKRAFAYFV
Sbjct: 61  NSRGFASDALASTKDDGLIMDIPATVAAVKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 120

Query: 380 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 439
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 440 RRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCP 499
           RRTEDDIKLANSVD+GSLRDPQQDEERVKDPEWL+V+GVCTHLGCIPLPNAGDYGGWFCP
Sbjct: 181 RRTEDDIKLANSVDIGSLRDPQQDEERVKDPEWLVVVGVCTHLGCIPLPNAGDYGGWFCP 240

Query: 500 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CHGSHYDVSGRIRKGPAPYNLEVPTY+FL+ NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYSFLEGNKLLIG 274

[Close]

BLAST of Clc01G08220.2 vs. ExPASy Swiss-Prot
Match: P51132 (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 6.0e-113
Identity = 204/280 (72.86%), Postives = 235/280 (83.93%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFR---PTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPH 319
           MLRIA RR SSLS    R   P+ ++ +  +H   D   S+P +   S        +   
Sbjct: 1   MLRIAGRRASSLSRWPVRSVAPSSSAFISANHFSSDDDSSSPRSISPS--------LASV 60

Query: 320 FDRNSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFA 379
           F  ++RGF+S++++   D GL+ D+P TVAAIKNP+SKIVYD++NHER+PPGDPSKRAFA
Sbjct: 61  FLHHTRGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFA 120

Query: 380 YFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPV 439
           YFVL+GGRFVYASL+RLL+LKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPV
Sbjct: 121 YFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPV 180

Query: 440 FIRRRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGW 499
           FIRRRTEDDI LANSVD+GSLRDPQQD ERVK PEWL+VIGVCTHLGCIPLPNAGD+GGW
Sbjct: 181 FIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGW 240

Query: 500 FCPCHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           FCPCHGSHYD+SGRIRKGPAPYNLEVPTY+FL+ENKLLIG
Sbjct: 241 FCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272

[Close]

BLAST of Clc01G08220.2 vs. ExPASy Swiss-Prot
Match: P51133 (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 7.4e-111
Identity = 204/277 (73.65%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDR 319
           MLRIA R+LSS ++     T +SS   + N    TD + S+  RS    +   +   F  
Sbjct: 1   MLRIAGRKLSSSAA-----TRSSSAFFTRNPFTFTDDS-SSPARSP---SPASLASQFLD 60

Query: 320 NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 379
             RGF+S++++     GL+ D+PATVAAIKNPSSKIVYDD NHER+PPGDPSKRAFAYFV
Sbjct: 61  QFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFV 120

Query: 380 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 439
           L+GGRFVYASL+RLL+LKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIR
Sbjct: 121 LTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIR 180

Query: 440 RRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCP 499
           RRTE+DI LANSVD+GSLRDPQQD ERVK+PEWL+VIGVCTHLGCIPLPNAGD+GGWFCP
Sbjct: 181 RRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCP 240

Query: 500 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CHGSHYD+SGRIRKGPAPYNLEVPTY+F++ENKLLIG
Sbjct: 241 CHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268

[Close]

BLAST of Clc01G08220.2 vs. ExPASy Swiss-Prot
Match: P51135 (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 2.1e-110
Identity = 202/277 (72.92%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDR 319
           MLRIA R+LSS +++      +SS   + N    TD + S+  RS    +   +   F  
Sbjct: 1   MLRIAGRKLSSSAAAR-----SSSAFFTRNPFTFTDDS-SSPTRSP---SPTSLASQFLD 60

Query: 320 NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 379
             RGF+S++++     GL+ D+PATVAAIKNPSSKIVYDD NHER+PPGDPSKRAFAYFV
Sbjct: 61  QFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFV 120

Query: 380 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 439
           L+GGRFVYASL+RLL+LKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIR
Sbjct: 121 LTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIR 180

Query: 440 RRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCP 499
           RRT++DI LANSVD+GSLRDPQQD ERVK+PEWL+VIGVCTHLGCIPLPNAGD+GGWFCP
Sbjct: 181 RRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCP 240

Query: 500 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CHGSHYD+SGRIRKGPAPYNLEVPTY+F++ENKLLIG
Sbjct: 241 CHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268

[Close]

BLAST of Clc01G08220.2 vs. ExPASy Swiss-Prot
Match: P37841 (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum OX=4113 GN=FES1 PE=1 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 4.8e-110
Identity = 203/279 (72.76%), Postives = 228/279 (81.72%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSA--PSNDFRSGGFFNTFPIGPHF 319
           MLR+A RR   LSSS  R +       S  + D +  A  PS    S            F
Sbjct: 1   MLRVAGRR---LSSSAARSSSTFFTRSSFTVTDDSSPARSPSPSLTSS-----------F 60

Query: 320 DRNSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAY 379
               RGF+S++++     GL+ D+PATVAAIKNPSSKIVYDD NHER+PPGDPSKRAFAY
Sbjct: 61  LDQIRGFSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAY 120

Query: 380 FVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVF 439
           FVL+GGRFVYAS +RLL+LKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVF
Sbjct: 121 FVLTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVF 180

Query: 440 IRRRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWF 499
           IRRRT+DDIKLANSVD+G+LRDPQQD ERVK+PEWL+V+GVCTHLGCIPLPNAGD+GGWF
Sbjct: 181 IRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWF 240

Query: 500 CPCHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CPCHGSHYD+SGRIRKGPAPYNLEVPTY+FL+ENKLLIG
Sbjct: 241 CPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 265

[Close]

BLAST of Clc01G08220.2 vs. ExPASy Swiss-Prot
Match: P49729 (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 2.4e-109
Identity = 192/257 (74.71%), Postives = 223/257 (86.77%), Query Frame = 0


Query: 280 IASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDRNSRGFASDALTSTKDDGLIL 339
           + S+ P S   I +   +  +D  S    +   +   F  ++RGF+S++++   D GL+ 
Sbjct: 3   VRSAAPSSSAFISANHFSSDDDSSSPRSISP-SLASVFLHHTRGFSSNSVSPAHDMGLVP 62

Query: 340 DIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFVLSGGRFVYASLIRLLVLKFV 399
           D+P TVAAIKNP+SKIVYD++NHER+PPGDPSKRAFAYFVL+GGRFVYASL+RLL+LKFV
Sbjct: 63  DLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKFV 122

Query: 400 LSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRD 459
           LSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTEDDI LANSVD+GSLRD
Sbjct: 123 LSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRD 182

Query: 460 PQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDVSGRIRKGPAPYN 519
           PQQD ERVK+PEWL+VIGVCTHLGCIPLPNAGD+GGWFCPCHGSHYD+SGRIRKGPAPYN
Sbjct: 183 PQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYN 242

Query: 520 LEVPTYTFLDENKLLIG 537
           LEVPTY+FL+ENKLLIG
Sbjct: 243 LEVPTYSFLEENKLLIG 258

[Close]

BLAST of Clc01G08220.2 vs. ExPASy TrEMBL
Match: A0A1S3CPE6 (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503117 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 7.8e-148
Identity = 262/277 (94.58%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDR 319
           MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDS D   SNDFRS GFFNTFPI PHFDR
Sbjct: 1   MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSAD---SNDFRSAGFFNTFPIRPHFDR 60

Query: 320 NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 379
           NSRGFASDAL STKDDGLI+DIPATVAA+KNPSSKIVYDDYNHERFPPGDPSKRAFAYFV
Sbjct: 61  NSRGFASDALASTKDDGLIMDIPATVAAVKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 120

Query: 380 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 439
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 440 RRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCP 499
           RRTEDDIKLANSVD+GSLRDPQQDEERVKDPEWL+V+GVCTHLGCIPLPNAGDYGGWFCP
Sbjct: 181 RRTEDDIKLANSVDIGSLRDPQQDEERVKDPEWLVVVGVCTHLGCIPLPNAGDYGGWFCP 240

Query: 500 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CHGSHYDVSGRIRKGPAPYNLEVPTY+FL+ NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYSFLEGNKLLIG 274

[Close]

BLAST of Clc01G08220.2 vs. ExPASy TrEMBL
Match: A0A6J1JWJ5 (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111488984 PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 8.7e-147
Identity = 261/277 (94.22%), Postives = 268/277 (96.75%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDR 319
           MLRIAARR SSLSSSHFRPTIASSLPGSH I+DS D   SNDFRSGGFFNTFP GPHFDR
Sbjct: 1   MLRIAARRFSSLSSSHFRPTIASSLPGSHKIVDSGD---SNDFRSGGFFNTFPSGPHFDR 60

Query: 320 NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 379
           + RGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYD+YNHERFPPGDPSKRAFAYFV
Sbjct: 61  SCRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDEYNHERFPPGDPSKRAFAYFV 120

Query: 380 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 439
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 440 RRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCP 499
           RRTEDDIKLANSVD+ SLRDPQQDEERVK+PEWLIV+GVCTHLGCIPLPNAGDYGGWFCP
Sbjct: 181 RRTEDDIKLANSVDIESLRDPQQDEERVKNPEWLIVVGVCTHLGCIPLPNAGDYGGWFCP 240

Query: 500 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CHGSHYD+SGRIRKGPAPYNLEVPTYTFLDENKLLIG
Sbjct: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 274

[Close]

BLAST of Clc01G08220.2 vs. ExPASy TrEMBL
Match: A0A6J1FL42 (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111444975 PE=3 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 1.3e-145
Identity = 260/277 (93.86%), Postives = 266/277 (96.03%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDR 319
           MLRIAARR SSLSSSHFRPTIASSLPGSH I DS D   SNDFRSGGFFNTFP GPHFDR
Sbjct: 1   MLRIAARRFSSLSSSHFRPTIASSLPGSHKIADSGD---SNDFRSGGFFNTFPSGPHFDR 60

Query: 320 NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 379
           + RGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYD+YNHERFPPGDPSKRAFAYFV
Sbjct: 61  SCRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDEYNHERFPPGDPSKRAFAYFV 120

Query: 380 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 439
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 440 RRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCP 499
           RRTEDDIK ANSVD+ SLRDPQQDEERVK+PEWLIV+GVCTHLGCIPLPNAGDYGGWFCP
Sbjct: 181 RRTEDDIKSANSVDIESLRDPQQDEERVKNPEWLIVVGVCTHLGCIPLPNAGDYGGWFCP 240

Query: 500 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CHGSHYD+SGRIRKGPAPYNLEVPTYTFLDENKLLIG
Sbjct: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 274

[Close]

BLAST of Clc01G08220.2 vs. ExPASy TrEMBL
Match: A0A0A0KTT3 (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G464800 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 4.8e-145
Identity = 259/277 (93.50%), Postives = 266/277 (96.03%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDR 319
           MLRIAARRLSSLSSSHFRPTIASS P SHNIIDSTD   SNDFRS GFFNTFPI   FDR
Sbjct: 1   MLRIAARRLSSLSSSHFRPTIASSFPASHNIIDSTD---SNDFRSAGFFNTFPIRSQFDR 60

Query: 320 NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 379
           +SRGFASDAL STKDDGLILDIPATVAA+KNPSSKIVYDDYNHERFPPGDPSKRAFAYFV
Sbjct: 61  HSRGFASDALASTKDDGLILDIPATVAAVKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 120

Query: 380 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 439
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 440 RRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCP 499
           RRTEDDIKLANSVD+GSLRDPQQDEERVKDPEWL+V+GVCTHLGCIPLPNAGDYGGWFCP
Sbjct: 181 RRTEDDIKLANSVDIGSLRDPQQDEERVKDPEWLVVVGVCTHLGCIPLPNAGDYGGWFCP 240

Query: 500 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CHGSHYDVSGRIRKGPAPYNLEVPTY+FL+ NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYSFLEGNKLLIG 274

[Close]

BLAST of Clc01G08220.2 vs. ExPASy TrEMBL
Match: A0A1S3CP16 (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503125 PE=3 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 8.1e-145
Identity = 255/277 (92.06%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDSAPSNDFRSGGFFNTFPIGPHFDR 319
           MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTD   SNDFRSGGFFNTFPIGPHFDR
Sbjct: 1   MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTD---SNDFRSGGFFNTFPIGPHFDR 60

Query: 320 NSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 379
           NSRGFASDAL+S K+  L+ D+PATVAA+KNP+SKIVYD+YNHERFPPGDPSKRAFAYFV
Sbjct: 61  NSRGFASDALSSMKETNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120

Query: 380 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 439
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 440 RRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYGGWFCP 499
           RRTE+DIKLANSVD+G+LRDPQQD ERVKDPEWLIV+GVCTHLGCIPLPNAGD+GGWFCP
Sbjct: 181 RRTEEDIKLANSVDIGTLRDPQQDGERVKDPEWLIVVGVCTHLGCIPLPNAGDFGGWFCP 240

Query: 500 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           CHGSHYDVSGRIRKGPAPYNLEVPTYTFL++NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLEDNKLLIG 274

[Close]

BLAST of Clc01G08220.2 vs. TAIR 10
Match: AT5G13440.1 (Ubiquinol-cytochrome C reductase iron-sulfur subunit )

HSP 1 Score: 396.0 bits (1016), Expect = 4.9e-110
Identity = 202/285 (70.88%), Postives = 230/285 (80.70%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASS--LPGSHNIID------STDSAPSNDFRSGGFFNTF 319
           MLR+A RRL S+S    R + A+S  L   H + D      ++ S PS D  S   ++  
Sbjct: 1   MLRVAGRRLFSVSQ---RSSTATSFVLSRDHTLSDGGNSSSASRSVPSADLSSFNSYHRS 60

Query: 320 PIGPHFDRNSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPS 379
            I        RGFAS  +T   + G   ++PATV A+K P+SKIVYDD+NHER+PPGDPS
Sbjct: 61  VI--------RGFASQVITQGNEIGFGSEVPATVEAVKTPNSKIVYDDHNHERYPPGDPS 120

Query: 380 KRAFAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKW 439
           KRAFAYFVLSGGRFVYAS++RLLVLK ++SMSASKDVLALASLEVDL SIEPG+TVTVKW
Sbjct: 121 KRAFAYFVLSGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKW 180

Query: 440 RGKPVFIRRRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAG 499
           RGKPVFIRRRTEDDIKLANSVDVGSLRDPQ+D  RVK+PEWLIV+GVCTHLGCIPLPNAG
Sbjct: 181 RGKPVFIRRRTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAG 240

Query: 500 DYGGWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           DYGGWFCPCHGSHYD+SGRIRKGPAPYNLEVPTY+FL+ENKLLIG
Sbjct: 241 DYGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 274

[Close]

BLAST of Clc01G08220.2 vs. TAIR 10
Match: AT5G13430.1 (Ubiquinol-cytochrome C reductase iron-sulfur subunit )

HSP 1 Score: 388.7 bits (997), Expect = 7.8e-108
Identity = 197/282 (69.86%), Postives = 227/282 (80.50%), Query Frame = 0


Query: 260 MLRIAARRLSSLSSSHFRPTIASSLPGS--HNIID---STDSAPSNDFRSGGFFNTFPIG 319
           MLR+A RRL S+S    R + A+S   S  H + D    + SAP +         +  + 
Sbjct: 1   MLRVAGRRLFSVSQ---RSSTATSFVVSRDHTLSDGGGDSSSAPRS-------LPSADLS 60

Query: 320 PHFDRNSRGFASDALTSTKDDGLILDIPATVAAIKNPSSKIVYDDYNHERFPPGDPSKRA 379
            +     RGF+S  L    + G   ++PATV A+K P+SKIVYDD+NHER+PPGDPSKRA
Sbjct: 61  SYHRSLIRGFSSQVLAQGNEIGFGSEVPATVEAVKTPNSKIVYDDHNHERYPPGDPSKRA 120

Query: 380 FAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGK 439
           FAYFVLSGGRFVYAS++RLLVLK ++SMSASKDVLALASLEVDL SIEPG+TVTVKWRGK
Sbjct: 121 FAYFVLSGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGK 180

Query: 440 PVFIRRRTEDDIKLANSVDVGSLRDPQQDEERVKDPEWLIVIGVCTHLGCIPLPNAGDYG 499
           PVFIRRRTEDDIKLANSVDVGSLRDPQ+D  RVK+PEWL+V+GVCTHLGCIPLPNAGDYG
Sbjct: 181 PVFIRRRTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDYG 240

Query: 500 GWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 537
           GWFCPCHGSHYD+SGRIRKGPAPYNLEVPTY+FL+ENKLLIG
Sbjct: 241 GWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272

[Close]

BLAST of Clc01G08220.2 vs. TAIR 10
Match: AT4G03280.1 (photosynthetic electron transfer C )

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-07
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 216 VCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEM 261
           VCTHLGC+   N  +   + CPCHGS Y+  GR+ +GPAP +L +
Sbjct: 156 VCTHLGCVVPWNKAE-NKFLCPCHGSQYNAQGRVVRGPAPLSLAL 199

[Close]

BLAST of Clc01G08220.2 vs. TAIR 10
Match: AT4G03280.2 (photosynthetic electron transfer C )

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-07
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 216 VCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEM 261
           VCTHLGC+   N  +   + CPCHGS Y+  GR+ +GPAP +L +
Sbjct: 137 VCTHLGCVVPWNKAE-NKFLCPCHGSQYNAQGRVVRGPAPLSLAL 180

The following BLAST results are available for this feature:

BLAST of Clc01G08220.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5403153.1	4.3e-209	68.26	hypothetical protein IGI04_009272 [Brassica rapa subsp. trilocularis]	[more]
KAF3507213.1	1.6e-195	64.84	hypothetical protein F2Q69_00000537 [Brassica cretica]	[more]
XP_038874657.1	1.6e-150	96.39	cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Benincasa hispida]	[more]
KAF3507222.1	9.5e-148	56.09	hypothetical protein F2Q69_00000538 [Brassica cretica]	[more]
XP_008465498.1	1.6e-147	94.58	PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis...	[more]

BLAST of Clc01G08220.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51132	6.0e-113	72.86	Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum OX=...	[more]
P51133	7.4e-111	73.65	Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum OX=...	[more]
P51135	2.1e-110	72.92	Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum OX=...	[more]
P37841	4.8e-110	72.76	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum OX=41...	[more]
P49729	2.4e-109	74.71	Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana ...	[more]

BLAST of Clc01G08220.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPE6	7.8e-148	94.58	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1JWJ5	8.7e-147	94.22	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucurbita maxima OX=366...	[more]
A0A6J1FL42	1.3e-145	93.86	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucurbita moschata OX=3...	[more]
A0A0A0KTT3	4.8e-145	93.50	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis sativus OX=3659...	[more]
A0A1S3CP16	8.1e-145	92.06	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Clc01G08220.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13440.1	4.9e-110	70.88	Ubiquinol-cytochrome C reductase iron-sulfur subunit	[more]
AT5G13430.1	7.8e-108	69.86	Ubiquinol-cytochrome C reductase iron-sulfur subunit	[more]
AT4G03280.1	2.7e-07	48.89	photosynthetic electron transfer C	[more]
AT4G03280.2	2.7e-07	48.89	photosynthetic electron transfer C	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005805	Rieske iron-sulphur protein, C-terminal	PRINTS	PR00162	RIESKE	coord: 234..246 score: 71.54 coord: 246..258 score: 69.81 coord: 212..223 score: 67.29
IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	GENE3D	2.102.10.10		coord: 143..270 e-value: 2.5E-54 score: 184.9 coord: 405..536 e-value: 2.7E-59 score: 201.0
IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	SUPERFAMILY	50022	ISP domain	coord: 136..263
IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	SUPERFAMILY	50022	ISP domain	coord: 398..534
IPR004192	Cytochrome b-c1 complex subunit Rieske, transmembrane domain	PFAM	PF02921	UCR_TM	coord: 96..145 e-value: 5.0E-11 score: 42.9 coord: 361..407 e-value: 7.2E-11 score: 42.4
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PFAM	PF00355	Rieske	coord: 158..259 e-value: 1.2E-10 score: 41.2 coord: 419..522 e-value: 5.3E-11 score: 42.3
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PROSITE	PS51296	RIESKE	coord: 466..534 score: 18.297745
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PROSITE	PS51296	RIESKE	coord: 204..272 score: 17.002394
IPR006317	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	TIGRFAM	TIGR01416	TIGR01416	coord: 131..260 e-value: 1.3E-48 score: 163.3 coord: 393..536 e-value: 6.5E-55 score: 183.8
IPR014349	Rieske iron-sulphur protein	PANTHER	PTHR10134	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	coord: 1..260
IPR014349	Rieske iron-sulphur protein	PANTHER	PTHR10134	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	coord: 260..536
None	No IPR available	PANTHER	PTHR10134:SF36	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	coord: 260..536
None	No IPR available	PANTHER	PTHR10134:SF36	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	coord: 1..260
None	No IPR available	CDD	cd03470	Rieske_cytochrome_bc1	coord: 413..536 e-value: 1.5838E-82 score: 250.94
None	No IPR available	CDD	cd03470	Rieske_cytochrome_bc1	coord: 151..259 e-value: 2.6413E-72 score: 224.361
None	No IPR available	SUPERFAMILY	81502	ISP transmembrane anchor	coord: 85..147
None	No IPR available	SUPERFAMILY	81502	ISP transmembrane anchor	coord: 347..409

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc01G08220	Clc01G08220	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G08220.2-exon	Clc01G08220.2-exon-ClcChr01:8408519..8408888	exon
Clc01G08220.2-exon	Clc01G08220.2-exon-ClcChr01:8411536..8412131	exon
Clc01G08220.2-exon	Clc01G08220.2-exon-ClcChr01:8415462..8415651	exon
Clc01G08220.2-exon	Clc01G08220.2-exon-ClcChr01:8418355..8418998	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G08220.2-five_prime_utr	Clc01G08220.2-five_prime_utr-ClcChr01:8408519..8408707	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G08220.2-cds	Clc01G08220.2-cds-ClcChr01:8408708..8408888	CDS
Clc01G08220.2-cds	Clc01G08220.2-cds-ClcChr01:8411536..8412131	CDS
Clc01G08220.2-cds	Clc01G08220.2-cds-ClcChr01:8415462..8415651	CDS
Clc01G08220.2-cds	Clc01G08220.2-cds-ClcChr01:8418355..8418998	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc01G08220.2	Clc01G08220.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity
molecular_function	GO:0046872	metal ion binding