Clc11G06070 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G06070
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	transcription elongation factor TFIIS
Location	ClcChr11: 5946774 .. 5948265 (-)
RNA-Seq Expression	Clc11G06070
Synteny	Clc11G06070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATGAGTTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCTGACGCCGCTGCAACACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGGCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTTTCTTCTCATTACACTTGAAATTCGTTTCTTCCGTTGATACTTGATAGTGGATAGAATGTGAGAATGTAAACAGCTGATTAGTTTGTAAAATCATACATGTTTTCTATTATGAATTCAGCCTAAATTCATTGTCTGCTCGCTTACGAATTGGTTTCATAACGAACTGAGTTCACCCTATTTCATTTATTATTTATGCTATTCACACTCACACAACAAAATCATCTCACTTGTGTAATCCTTTTAAGTTTTGGGGAAATTATTCCTTGTTATCCAATCTTTTGTTGCATCTTTATAATCCTTTTTCCTGTGTAATTAAAGTCGACTTTGCCTGTGTTGATAGCTTCTATATCTTGTCTTCTATAGGTTGGGAAGCGCCTTCGGCACCTCACTAAACACCCTAAGAAGAAAATACAGGAGTATGCTTCTGACCTGATTGAGATGTGGAAGGAAATAGTCATCAAGGAAACTAACAAGAATAAGAAAAATGGAAATGCCAACTGTAAAGATTCACCTAAAATTGGTTCTTCCAGGGCGGAGTCCATTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAAAGAGTTTCCAAGGGTGAGCAATTCGATAGGAATGGTGCCACAAGCTCTGTAAAATATTCCAGATCAGAAAGCACGGTTTCGGAGAAAAATTCTGTCAAGGTCGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAAAATCTCAATAGACAAGAAACCTAGTGGGGCTGCTGCACCTCCAAAACTTACTTCCATGATTAAATCGAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGCGATCCCATTCGTGTTGCTGTTTCTGTAGAATCCGTCATGTTCGAAAATTGGGGAGGTTCTACTGGTGCACAGAAGGCCAAGTACAGGTCCATTATGTTTAATCTCAAGGATCCGAAGAACCCAGACTTCCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGAATGATCAATATGAGCACAGCCGATATGGCTAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAAAAAGCTTTATTCGATTGTGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAACGCAAAACGACCTATTATCAATTACAGACGCGTAGTGCAGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

mRNA sequence

ATGGAGAATGAGTTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCTGACGCCGCTGCAACACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGGCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGCCTTCGGCACCTCACTAAACACCCTAAGAAGAAAATACAGGAGTATGCTTCTGACCTGATTGAGATGTGGAAGGAAATAGTCATCAAGGAAACTAACAAGAATAAGAAAAATGGAAATGCCAACTGTAAAGATTCACCTAAAATTGGTTCTTCCAGGGCGGAGTCCATTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAAAGAGTTTCCAAGGGTGAGCAATTCGATAGGAATGGTGCCACAAGCTCTGTAAAATATTCCAGATCAGAAAGCACGGTTTCGGAGAAAAATTCTGTCAAGGTCGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAAAATCTCAATAGACAAGAAACCTAGTGGGGCTGCTGCACCTCCAAAACTTACTTCCATGATTAAATCGAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGCGATCCCATTCGTGTTGCTGTTTCTGTAGAATCCGTCATGTTCGAAAATTGGGGAGGTTCTACTGGTGCACAGAAGGCCAAGTACAGGTCCATTATGTTTAATCTCAAGGATCCGAAGAACCCAGACTTCCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGAATGATCAATATGAGCACAGCCGATATGGCTAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAAAAAGCTTTATTCGATTGTGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAACGCAAAACGACCTATTATCAATTACAGACGCGTAGTGCAGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Coding sequence (CDS)

ATGGAGAATGAGTTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCTGACGCCGCTGCAACACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGGCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGCCTTCGGCACCTCACTAAACACCCTAAGAAGAAAATACAGGAGTATGCTTCTGACCTGATTGAGATGTGGAAGGAAATAGTCATCAAGGAAACTAACAAGAATAAGAAAAATGGAAATGCCAACTGTAAAGATTCACCTAAAATTGGTTCTTCCAGGGCGGAGTCCATTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAAAGAGTTTCCAAGGGTGAGCAATTCGATAGGAATGGTGCCACAAGCTCTGTAAAATATTCCAGATCAGAAAGCACGGTTTCGGAGAAAAATTCTGTCAAGGTCGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAAAATCTCAATAGACAAGAAACCTAGTGGGGCTGCTGCACCTCCAAAACTTACTTCCATGATTAAATCGAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGCGATCCCATTCGTGTTGCTGTTTCTGTAGAATCCGTCATGTTCGAAAATTGGGGAGGTTCTACTGGTGCACAGAAGGCCAAGTACAGGTCCATTATGTTTAATCTCAAGGATCCGAAGAACCCAGACTTCCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGAATGATCAATATGAGCACAGCCGATATGGCTAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAAAAAGCTTTATTCGATTGTGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAACGCAAAACGACCTATTATCAATTACAGACGCGTAGTGCAGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Protein sequence

MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQKSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKKISIDKKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC

Homology

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BLAST of Clc11G06070 vs. NCBI nr
Match: XP_038884917.1 (transcription elongation factor TFIIS [Benincasa hispida])

HSP 1 Score: 682.2 bits (1759), Expect = 2.6e-192
Identity = 355/375 (94.67%), Postives = 362/375 (96.53%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELF+AAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFQAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQEYASDL+EMWKEIVIKETNKNKKNGN NCKDSPKIGS  AES+KVEKFQ
Sbjct: 61  HLTKHPKKKIQEYASDLVEMWKEIVIKETNKNKKNGNGNCKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSK EQFD+NGAT SVKYSR ES VSE+NSVKVEKTDS VKVE  VKEE++
Sbjct: 121 KSSSMKVERVSKVEQFDKNGATGSVKYSRLESAVSERNSVKVEKTDSAVKVEGTVKEERR 180

Query: 181 ISIDKKPS-GAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240
           ISIDKKPS G AAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI
Sbjct: 181 ISIDKKPSGGTAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300
           RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300

Query: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 375
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

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BLAST of Clc11G06070 vs. NCBI nr
Match: XP_004138392.1 (transcription elongation factor TFIIS [Cucumis sativus] >KGN45841.1 hypothetical protein Csa_005416 [Cucumis sativus])

HSP 1 Score: 672.5 bits (1734), Expect = 2.0e-189
Identity = 353/374 (94.39%), Postives = 361/374 (96.52%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQE+ASDLIEMWKEIVIKETNKNKKNGNA+ KDSPKIGS  AES+KVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSK EQFDRNGATSSVKYS+SES VSE+NSVKVEKTDS+VKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180

Query: 181 ISIDKKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240
            S     SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADE+ MDEVNASDPIR
Sbjct: 181 PS-----SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300

Query: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 369

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BLAST of Clc11G06070 vs. NCBI nr
Match: XP_023531955.1 (transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 669.5 bits (1726), Expect = 1.7e-188
Identity = 348/374 (93.05%), Postives = 358/374 (95.72%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVELFEAAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MEKELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQ+YASDLIEMWK+IVIKETNKNKKNGN N K++ KIGS  AES+KVE  Q
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQ 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSK EQFDRNG+TSSVKYSRS S VSEKNSVKVEKTDSVVKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 ISIDKKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240
           ISI+KKPSGAA PPKLTSMIKSKDAARDKIRELL EAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM N+ST D
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300

Query: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALF+CERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 374

[Close]

BLAST of Clc11G06070 vs. NCBI nr
Match: XP_008456781.1 (PREDICTED: transcription elongation factor TFIIS [Cucumis melo] >KAA0051978.1 transcription elongation factor TFIIS [Cucumis melo var. makuwa] >TYK04579.1 transcription elongation factor TFIIS [Cucumis melo var. makuwa])

HSP 1 Score: 669.5 bits (1726), Expect = 1.7e-188
Identity = 351/374 (93.85%), Postives = 359/374 (95.99%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQE+ASDLIEMWKEIVIKETNKNKKNGNA+ KDSPKIGS   ES+KVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSK EQFDRNGATSSVKYSRSES VS+ +SVK EKTDSVVKVERIVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 ISIDKKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240
            S     SGAAAPPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 181 PS-----SGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300
           VA+SVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM+TAD
Sbjct: 241 VAISVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTAD 300

Query: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 369

[Close]

BLAST of Clc11G06070 vs. NCBI nr
Match: KAG6578486.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 664.1 bits (1712), Expect = 7.2e-187
Identity = 346/375 (92.27%), Postives = 358/375 (95.47%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQ YASDLIE+WKEIVIKETNKNKKNGN +CK+SPKIGS  AES+KVEKF+
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVS+ EQFDRNG TSS K+SRSES +S KNSVKVEKTDSVVKVERIVKEEK+
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIDKKP-SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240
           ISI+KKP SG  APPKLTSMIKSKDAARDKIRELLFEAFSKVP EADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300
           RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 361 TFVTCVNCNNHWKFC 375
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of Clc11G06070 vs. ExPASy Swiss-Prot
Match: Q9ZVH8 (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 3.5e-107
Identity = 219/383 (57.18%), Postives = 273/383 (71.28%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKK-NGNANCKDSPKIGSSRAES----- 120
           R L KHP + I+  A+DL+E+WK++VI+ET K KK  G   CK++ K+     E      
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEA-KVNKMDVEKPSNPA 120

Query: 121 -IKVEKFQKSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVE 180
            +KV+K Q+  S K  +V + E    N   + VK  R    +   N  K++     VK E
Sbjct: 121 PVKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDE 180

Query: 181 RIVKEEKKISIDKKPSGAA-APPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMD 240
           ++ K+ +  S  K P+ AA APPKLT+M+K  D  RDKIRELL EA  +V GEAD+   +
Sbjct: 181 KVSKDNQ--SSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERE 240

Query: 241 EVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 300
            VNASDP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE
Sbjct: 241 SVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPE 300

Query: 301 RMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQT 360
           ++I +S  DMASD+RK+EN +I +KALFDCERG A KA+TDQFKCGRCGQRK TYYQ+QT
Sbjct: 301 KLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQT 360

Query: 361 RSADEPMTTFVTCVNCNNHWKFC 375
           RSADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 RSADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of Clc11G06070 vs. ExPASy Swiss-Prot
Match: P20232 (Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-28
Identity = 109/369 (29.54%), Postives = 157/369 (42.55%), Query Frame = 0


Query: 7   ELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHP 66
           E+F   KK +  A+      G  + + LD L+ L+   +   IL  T++G  +  L K  
Sbjct: 6   EVFRIQKKMSKMAS-----DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSS 65

Query: 67  K-KKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQKSSSM 126
           K  ++   A  LI+ WK  +         N +A  K+     SS ++S    K   S S 
Sbjct: 66  KDDEVIALAKTLIKNWKRFLASPAPTTPNNSSA--KEGSSNNSSASKSTSAAKSSSSISG 125

Query: 127 KVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKKISIDK 186
           K                      +S S+ S K+  K   T S              S   
Sbjct: 126 K---------------------DKSSSSSSSKDKEKKGSTSS--------------SQTS 185

Query: 187 KPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSV 246
            PSG              DA R K RE+L  A     GE  E         +P  +A  +
Sbjct: 186 FPSGGMT-----------DAVRIKCREMLATALK--IGEVPE------GCGEPEEMAAEL 245

Query: 247 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 306
           E  ++  +  +    K + RS + NLKDPKNP  R   + G +  +++  M+  +MASD+
Sbjct: 246 EDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDE 305

Query: 307 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 366
            K+  E+  ++A+ D +        TD  KC +C +R  TY QLQTRSADEPMTTFV C 
Sbjct: 306 MKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCN 313

Query: 367 NCNNHWKFC 375
            C N WKFC
Sbjct: 366 ECGNRWKFC 313

[Close]

BLAST of Clc11G06070 vs. ExPASy Swiss-Prot
Match: O75764 (Transcription elongation factor A protein 3 OS=Homo sapiens OX=9606 GN=TCEA3 PE=1 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 3.2e-28
Identity = 115/380 (30.26%), Postives = 175/380 (46.05%), Query Frame = 0


Query: 7   ELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     A  + +G       LD L++L    ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKNTEG------ALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSP-----KIGSSRAESIKVEKFQ 126
             K++   A  LI+ WK ++                DSP     + G  R ++ K EK  
Sbjct: 66  SDKEVVSLAKVLIKNWKRLL----------------DSPGPPKGEKGEEREKAKKKEKGL 125

Query: 127 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 186
           + S  K E      +  R         +R +S  S+ ++    K  S   VER    + K
Sbjct: 126 ECSDWKPEAGLSPPRKKREDPK-----TRRDSVDSKSSASSSPKRPS---VERSNSSKSK 185

Query: 187 ISIDKKPSGAAAPPKLTSM------IKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVN 246
               K PS    P   +SM        + D+ RDK  E+L  A      +AD+D  D   
Sbjct: 186 AESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDDYKDYGV 245

Query: 247 ASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMI 306
             D  ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I    + 
Sbjct: 246 NCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIA 305

Query: 307 NMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSA 366
            M+  +MASD+ +     + Q+A+ + +       TTD F+C +C ++  TY Q+QTRSA
Sbjct: 306 KMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSA 348

Query: 367 DEPMTTFVTCVNCNNHWKFC 375
           DEPMTTFV C  C N WKFC
Sbjct: 366 DEPMTTFVLCNECGNRWKFC 348

[Close]

BLAST of Clc11G06070 vs. ExPASy Swiss-Prot
Match: P23881 (Transcription elongation factor A protein 3 OS=Mus musculus OX=10090 GN=Tcea3 PE=1 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 5.5e-28
Identity = 113/379 (29.82%), Postives = 171/379 (45.12%), Query Frame = 0


Query: 7   ELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     +    +G       LD L++L    ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVSRKKTEG------ALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQEYASDLIEMWKEIV---------IKETNKNKKNGNANCKD-SPKIGSSRAESIK 126
             K++   A  LI+ WK ++          +E  K KK     C D  P+ G S      
Sbjct: 66  SDKEVVSLAKVLIKNWKRLLDSPRTTKGEREEREKAKKEKGLGCSDWKPEAGLSPPRK-- 125

Query: 127 VEKFQKSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIV 186
               +     K  R S      R+  TSS K    E + S K+ V+   T          
Sbjct: 126 ----KGGGEPKTRRDSVD---SRSSTTSSPKRPSLERSNSSKSKVETPTTP--------- 185

Query: 187 KEEKKISIDKKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNA 246
                 S    P+ A A   L     + D+ RDK  E+L  A      +A+++  D    
Sbjct: 186 ------SSPSTPTFAPAVCLLAPCYLTGDSVRDKCVEMLSAAL-----KAEDNFKDYGVN 245

Query: 247 SDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMIN 306
            D  ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I PE +  
Sbjct: 246 CD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAK 305

Query: 307 MSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSAD 366
           M+  +MASD+ +     + Q+A+ + +       TTD  +C +C ++  TY Q+QTRSAD
Sbjct: 306 MTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSAD 347

Query: 367 EPMTTFVTCVNCNNHWKFC 375
           EPMTTFV C  C N WKFC
Sbjct: 366 EPMTTFVLCNECGNRWKFC 347

[Close]

BLAST of Clc11G06070 vs. ExPASy Swiss-Prot
Match: Q2KI09 (Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-27
Identity = 107/370 (28.92%), Postives = 171/370 (46.22%), Query Frame = 0


Query: 7   ELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     A    +G       LD L++L  + ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKKTEG------ALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQKSSSM 126
             K++   A  LI  WK+++        + G    K        + + +    ++  +S+
Sbjct: 66  SNKEVVALAKVLIRNWKQLLDSPATPKGEKGEERVK-----AKKKEKGLDCSDWKPETSL 125

Query: 127 KVERVSKGEQ-FDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKKISID 186
              R  + E+  DR  +      S+S +T S K         S  K E      +  S  
Sbjct: 126 SPPRKKRVEEPKDRRDSVD----SKSSATSSPKRPSMERSNSSKSKAE----TPRTPSSP 185

Query: 187 KKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVS 246
             P+ A +   L     + D+ RDK  E+L  A      +AD+D  D     D  ++A  
Sbjct: 186 SSPTFAPSVCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDDYKDYGVNCD--KMASE 245

Query: 247 VESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASD 306
           +E  +++    +    + + RS + NLKDP+NP  RR VL G I    +  M+  +MASD
Sbjct: 246 IEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASD 305

Query: 307 QRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTC 366
           + +     + Q+A+ + +       TTD F+C +C ++  TY Q+QTRSADEPMTTFV C
Sbjct: 306 ELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC 349

Query: 367 VNCNNHWKFC 375
             C N WKFC
Sbjct: 366 NECGNRWKFC 349

[Close]

BLAST of Clc11G06070 vs. ExPASy TrEMBL
Match: A0A0A0KDH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 672.5 bits (1734), Expect = 9.9e-190
Identity = 353/374 (94.39%), Postives = 361/374 (96.52%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQE+ASDLIEMWKEIVIKETNKNKKNGNA+ KDSPKIGS  AES+KVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSK EQFDRNGATSSVKYS+SES VSE+NSVKVEKTDS+VKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180

Query: 181 ISIDKKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240
            S     SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADE+ MDEVNASDPIR
Sbjct: 181 PS-----SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300

Query: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 369

[Close]

BLAST of Clc11G06070 vs. ExPASy TrEMBL
Match: A0A5A7U9K1 (Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002160 PE=4 SV=1)

HSP 1 Score: 669.5 bits (1726), Expect = 8.3e-189
Identity = 351/374 (93.85%), Postives = 359/374 (95.99%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQE+ASDLIEMWKEIVIKETNKNKKNGNA+ KDSPKIGS   ES+KVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSK EQFDRNGATSSVKYSRSES VS+ +SVK EKTDSVVKVERIVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 ISIDKKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240
            S     SGAAAPPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 181 PS-----SGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300
           VA+SVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM+TAD
Sbjct: 241 VAISVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTAD 300

Query: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 369

[Close]

BLAST of Clc11G06070 vs. ExPASy TrEMBL
Match: A0A1S3C448 (transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE=4 SV=1)

HSP 1 Score: 669.5 bits (1726), Expect = 8.3e-189
Identity = 351/374 (93.85%), Postives = 359/374 (95.99%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQE+ASDLIEMWKEIVIKETNKNKKNGNA+ KDSPKIGS   ES+KVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSK EQFDRNGATSSVKYSRSES VS+ +SVK EKTDSVVKVERIVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 ISIDKKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240
            S     SGAAAPPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 181 PS-----SGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300
           VA+SVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM+TAD
Sbjct: 241 VAISVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTAD 300

Query: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 369

[Close]

BLAST of Clc11G06070 vs. ExPASy TrEMBL
Match: A0A6J1BWY6 (transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC111006416 PE=4 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 4.6e-187
Identity = 347/377 (92.04%), Postives = 359/377 (95.23%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQ+YASDLIEMWKEIVIKETNKNKKNGN NCK+SPKIGS  AES+KVEKFQ
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKEIVIKETNKNKKNGNGNCKESPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSV--VKVERIVKEE 180
           KSSSMKVERVSK EQ DRNG TSSVKYSRSES +SEKN VKVEKTDS+  VK ER+VKEE
Sbjct: 121 KSSSMKVERVSKVEQSDRNGTTSSVKYSRSESVISEKNIVKVEKTDSLEKVKAERVVKEE 180

Query: 181 KKISIDKKP-SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASD 240
           KKISIDK+P SG AAPPKLTSMIKSKDAARDKIRELL EAFSKVPGEADEDV+DEVNASD
Sbjct: 181 KKISIDKRPSSGTAAPPKLTSMIKSKDAARDKIRELLCEAFSKVPGEADEDVIDEVNASD 240

Query: 241 PIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMS 300
           P+RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRR VL+G IKPER+INMS
Sbjct: 241 PVRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRNVLVGHIKPERLINMS 300

Query: 301 TADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 360
           TA+MASDQRKRENEEI QKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP
Sbjct: 301 TAEMASDQRKRENEEIEQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 360

Query: 361 MTTFVTCVNCNNHWKFC 375
           MTTFVTCVNCNNHWKFC
Sbjct: 361 MTTFVTCVNCNNHWKFC 377

[Close]

BLAST of Clc11G06070 vs. ExPASy TrEMBL
Match: A0A6J1JLK7 (transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111486982 PE=4 SV=1)

HSP 1 Score: 662.5 bits (1708), Expect = 1.0e-186
Identity = 345/374 (92.25%), Postives = 357/374 (95.45%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVELFEAAKKAADAAA PSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MEKELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKKNGNANCKDSPKIGSSRAESIKVEKFQ 120
           HLTKHPKKKIQ+YASDLIEMWK+IVIKETNKNKKNGN N K+  KIGS  AES+KVE FQ
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENFQ 120

Query: 121 KSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKVERVSK EQF+R G+TSSVK+SRS S VSEKNSVKVEKTDSVVKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFNRIGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 ISIDKKPSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240
           ISI+KKPSGAA PPKLTSMIKSKDAARDKIRELL EAFSKVPGEADEDV+DEVNASDPIR
Sbjct: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM N+ST D
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300

Query: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALF+CERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 374

[Close]

BLAST of Clc11G06070 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 389.8 bits (1000), Expect = 2.5e-108
Identity = 219/383 (57.18%), Postives = 273/383 (71.28%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADAAATPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQEYASDLIEMWKEIVIKETNKNKK-NGNANCKDSPKIGSSRAES----- 120
           R L KHP + I+  A+DL+E+WK++VI+ET K KK  G   CK++ K+     E      
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEA-KVNKMDVEKPSNPA 120

Query: 121 -IKVEKFQKSSSMKVERVSKGEQFDRNGATSSVKYSRSESTVSEKNSVKVEKTDSVVKVE 180
            +KV+K Q+  S K  +V + E    N   + VK  R    +   N  K++     VK E
Sbjct: 121 PVKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDE 180

Query: 181 RIVKEEKKISIDKKPSGAA-APPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMD 240
           ++ K+ +  S  K P+ AA APPKLT+M+K  D  RDKIRELL EA  +V GEAD+   +
Sbjct: 181 KVSKDNQ--SSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERE 240

Query: 241 EVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 300
            VNASDP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE
Sbjct: 241 SVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPE 300

Query: 301 RMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQT 360
           ++I +S  DMASD+RK+EN +I +KALFDCERG A KA+TDQFKCGRCGQRK TYYQ+QT
Sbjct: 301 KLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQT 360

Query: 361 RSADEPMTTFVTCVNCNNHWKFC 375
           RSADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 RSADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of Clc11G06070 vs. TAIR 10
Match: AT2G42730.1 (F-box family protein )

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-22
Identity = 59/127 (46.46%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 194 PKLTSMIKSKDAARDKIRELLFEAFSKVPGE-ADEDVMDEVNASDPIRVAVSVESVMFEN 253
           P  ++M K+ D+ RDK+RE+L  +  KV  E  D ++   V A DP  VAVSVES MFE 
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653

Query: 254 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEE 313
            G   G  KAKYRSI+FN+ D  NPD RRKVL+G I  ER++ M   +M S++ ++E + 
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713

Query: 314 IAQKALF 320
           I + A F
Sbjct: 714 IKENARF 720

[Close]

BLAST of Clc11G06070 vs. TAIR 10
Match: AT4G18720.1 (Transcription factor IIS protein )

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-21
Identity = 57/111 (51.35%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 194 PKLTSMIKSKDAARDKIRELLFEAFSKVPGE-ADEDVMDEVNASDPIRVAVSVESVMFEN 253
           P   +M K+ D+ RDK+RE+L  + +KV  E  D ++   V A DP  VAVSVE+ MFEN
Sbjct: 105 PTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFEN 164

Query: 254 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMAS 304
            G   G QKAKYRSI+FN+ D  NPD RRKVLLG I  ER++ M   +M S
Sbjct: 165 LGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215

[Close]

BLAST of Clc11G06070 vs. TAIR 10
Match: AT5G42325.1 (Transcription factor IIS protein )

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-12
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 194 PKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDE--VNASDPIRVAVSVESVMFE 253
           P  ++M K+ D+ RDK+ E+L  + +KV  E  +  M    +   DP  VAVSVES M  
Sbjct: 104 PTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-- 163

Query: 254 NWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENE 313
                         SI+FN+ D  NPD RRKVL+G I  ER++ M   +M S++ ++E +
Sbjct: 164 --------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQ 215

Query: 314 EIAQKALF 320
            I ++A F
Sbjct: 224 RIKERARF 215

[Close]

BLAST of Clc11G06070 vs. TAIR 10
Match: AT5G25520.1 (SPOC domain / Transcription elongation factor S-II protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-09
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 237 DPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM 296
           DP  +A  +E  +F+ +GG     K K RS++FNLKD  NP+ R  V+ G I PER+ NM
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418

Query: 297 STADMASDQ----RKRENEEIAQ 316
           +  ++AS +    R+ + EE+A+
Sbjct: 419 TAEELASKELSQWRQAKAEEMAE 441

The following BLAST results are available for this feature:

BLAST of Clc11G06070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884917.1	2.6e-192	94.67	transcription elongation factor TFIIS [Benincasa hispida]	[more]
XP_004138392.1	2.0e-189	94.39	transcription elongation factor TFIIS [Cucumis sativus] >KGN45841.1 hypothetical...	[more]
XP_023531955.1	1.7e-188	93.05	transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo]	[more]
XP_008456781.1	1.7e-188	93.85	PREDICTED: transcription elongation factor TFIIS [Cucumis melo] >KAA0051978.1 tr...	[more]
KAG6578486.1	7.2e-187	92.27	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Clc11G06070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVH8	3.5e-107	57.18	Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS P...	[more]
P20232	1.1e-28	29.54	Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS...	[more]
O75764	3.2e-28	30.26	Transcription elongation factor A protein 3 OS=Homo sapiens OX=9606 GN=TCEA3 PE=...	[more]
P23881	5.5e-28	29.82	Transcription elongation factor A protein 3 OS=Mus musculus OX=10090 GN=Tcea3 PE...	[more]
Q2KI09	1.2e-27	28.92	Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 ...	[more]

BLAST of Clc11G06070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDH9	9.9e-190	94.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1	[more]
A0A5A7U9K1	8.3e-189	93.85	Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C448	8.3e-189	93.85	transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE...	[more]
A0A6J1BWY6	4.6e-187	92.04	transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1JLK7	1.0e-186	92.25	transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Clc11G06070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38560.1	2.5e-108	57.18	transcript elongation factor IIS	[more]
AT2G42730.1	2.7e-22	46.46	F-box family protein	[more]
AT4G18720.1	1.3e-21	51.35	Transcription factor IIS protein	[more]
AT5G42325.1	1.5e-12	36.72	Transcription factor IIS protein	[more]
AT5G25520.1	1.2e-09	39.76	SPOC domain / Transcription elongation factor S-II protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 204..312 e-value: 4.8E-36 score: 135.8
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 204..320 e-value: 1.1E-31 score: 109.6
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 206..329 score: 33.614571
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 334..373 e-value: 9.7E-24 score: 94.9
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 334..372 e-value: 1.1E-19 score: 70.0
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 336..371
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 332..372 score: 14.636859
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 8..87 e-value: 2.4E-23 score: 93.5
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 36..85 e-value: 4.4E-11 score: 42.6
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 10..88 score: 19.851303
IPR006289	Transcription elongation factor, TFIIS	TIGRFAM	TIGR01385	TIGR01385	coord: 12..374 e-value: 2.5E-98 score: 327.4
None	No IPR available	GENE3D	2.20.25.10		coord: 303..374 e-value: 1.4E-27 score: 97.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..152
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 1..374
None	No IPR available	PANTHER	PTHR11477:SF36	TRANSCRIPTION ELONGATION FACTOR TFIIS	coord: 1..374
None	No IPR available	CDD	cd13749	Zn-ribbon_TFIIS	coord: 327..373 e-value: 4.16722E-30 score: 107.692
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 24..85 e-value: 7.14403E-17 score: 72.7262
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 315..372
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 1..100 e-value: 8.1E-24 score: 85.2
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 27..97
IPR035100	Transcription elongation factor, IIS-type	PIRSF	PIRSF006704	TFIIS	coord: 2..374 e-value: 9.2E-98 score: 325.5
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 182..302 e-value: 8.8E-27 score: 95.6
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 193..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G06070.2	Clc11G06070.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006414	translational elongation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding