Sed0020163.2 (mRNA) Chayote v1

Overview


Name	Sed0020163.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase
Location	LG03: 1669336 .. 1673717 (-)
Sequence length	1419
RNA-Seq Expression	Sed0020163.2
Synteny	Sed0020163.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAATGATATGATCAGAATATTTGAGCCCCGTTCTATCCTCCAACCAAACCCCAATTTCATTCATAGCAAAGAGAGGCACCGCAACGACAGATTCCTAAAAGAAAAAGGAAAAAAAAAAATTGCAGCTTTAATTTCGCGGGATTCGTAGCTTTCGATTCATCGCCTCCAATTCCCTTTTCCAATCCTAACGCCCCTTAAAACGCGTAATCTCGATTTAGCTTCAAATCCCAAATATCTGTGTTCGTGATTTTTTGTTTAAATCCCAAAACGCGCATGTTTATAATTTCCGCATATTCTCCCAATTTCCATCCCAAGATCACTTCACTGCTCTCTTAAGGTACTTCTATTGGAATCCTTTTTCGTGTAATCGGTTGAGGGGTACCCTGTTGATCGTCCCAATTTTGATTGTTCTGTACTGGGTTTCTTTGTTTTTTCATGATTTGTATGATTTTGCCGCCCGATCGCCTATTTGTTGTGTTTTTTCATATGGGGTTTTCGTTTTGTTTTGAATGGCGTTTTCTCTTGTTCTGTGCCGTTTGTTCTTTAATGGGTACACATTGGATGAGTTGTGTGTATGTTCTGGGTGATGATGATCAGCTTGGTTTGCTATTGATGTTTTTTTGGTATTTTGTTTCATTATCATTAAGTAAAGAATCCGTGTTCTCAGAGGTGACCCAGAAAAAAAAAAGTCAATTTGGTGAGATGAGTGGGTAACCCTTTGGATTGTTGACCGAAGATTGTGGCATTTGATTAACCCTTTTGTTTATTTTTGGCTGTTTCGACTTTTTTTTTGTCATTGTTGTTATCGTGGCTTTGGATTGCTGCCGACAGATTCTTGTTCCTTGGTTTAATACATGATCTTTGTAGGAATTGTTATTTACTTCCTTTCTAGGTGATTGCATTGACATTTATGTTACCATAGTTGCTTTGAGGATACCGCCTTTGGGACCTCATCTTATTGATAGTTTTACTGAACAGAGGCTGCTTATTTTACAGGTGAAAATTATCAGTGTAAGGAATCCAGTTAACTCGAATTGAAGAGGGAGAGTACTGGTTCGTGGAGGCATTGCTACTTCTGCGAGCTTATGTACTCTCGTCTCCATTTGCCAAGAACTCCCCATTTGAATGCAAGTAAATAGCTAAATTAGTCTATCTGTTGGATTGGGGTTTATAAAGAGATTGGTACTCGGTTGGAGTTGGCACAATGGGTGCTGTTTGCTGCTGTTTGAGTATGGAAGATTTTGAAGACTATGTCAATCCTAATAGTTCAGCATATAGGAATTGCGCCTGTCTTAGCTGCTTCATTCAAAATTTCTTAAATGCAGTAAGCCCCATATTCCTTGCATTATATTTCATGCTAGTTTGCGATTTGTCACTATGAAGGATGGAAATACAATATTCATTATATCAACAATGGGATTTTGTTTGAATGTTAATATTGGTGAAGATTTGAAGATTTTTTTTGATAGTTAGAAACAAAATATTTTTCAACAACCAAATGTGCATTACTTGGCCTTGATACCCACAGATATATTTGACTACTATACTCTTTCATATTTTGAAGTTTATATGGTATTCAAGTATAGAGTTTAAGTATGGCATATTATTGCATTGTTTGTGTGTCCTTCCATATTTCTACCTTTATAATGAGTGGGTAAAATAAGTCACTGACTTTATTCTTTAGATAATTGCATAACTCTGTCTGCCCTCTTATTTTCTTTTCTCAAGTACACATCGGTTTTTCGAAGAGGGGAAGTGCATCCTATCTCTTCATCAATTCAAGGGGCAACGTCTATGAATTCTGCAGCATCAATAGATAATTCTTTATCTGAAATATACCGCTCACCCCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATTCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTCTCAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGACTCGGCAGGCAAATGGAAGGGATCTTCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTGAAGTTCCCAACAACTAAACCTCCCACCGGAACTTGGTATTCTTGTACATCCTCAGAAGAAGACGAGGATGTCTGCCCGACGTGTCTTGAAGGTTGATTATTTATTAGCTTCACTTTATTATAGTTTTTATTGCTTGTGAAATCTATGGTTTTGGCCCTCAACATTCTTGTTTTTTGAGCTTATGGGTGACAAACGTGTTACTGATCCACACATTTTTTAACAGCCAAATTTTCTTTCTGGTCGCTAAATTTTCTTATTTTCCTAGCAGAGTATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTATGCTTCTTTTTCTTCATCATATCATATAAACTTAGTCAATCACTATCTCAAAGCCACCCTTTTGTTTGTGTAGATTGATGTTTGGATTTTTTAGGTTCTGCAAGTTCTGTGTTTCATAAGCGTTTCTATTACTTTACAAAGAAAAAAACAAGTGTTCCTATTATTTGGGAAGTTTAAGATTGTCTGACTATTGATTTGAATACAAATAGAATTTTTTTTTGTCATTTTAGTATGGGATGGGCACAAGGACCATTTCGAATTTGCACGATCATCGGGGTAACATATGGTGTAATAATGATCTATTCATTTATGCTATCTACTATTAGACTCTTAGTCATATTTGTTTGGGATCATTAGATTAAGTTATGCCGACTTCAGAATATTGCCTATCAGAAAACTTGTAGAATTAGAAGTTTAAGAGAACACGTTATCTTGTCCAATTTATCAATTCTAACCAGTTGAAAATCATATTCATCTTGTCCAATATTTCTTACTGTGAATATGATTTTCAACTGGTGTTTGAACTGATAAATAGGACAAGAAGCAATTGTCTAGAAACCCATATTGAAGCCACTGTGAAATGGAGGGTATTTTTTTGTTGTAGAATTATTAAGGTTTTTTTCTCCTGTAACGACCCTGCCTCATTTTCTGAATCTTTTATTTGGCATGAGGAGCGTATTTTTCTTGTCTGATAGTTTTCTTTCTTACATATTAGTTATGTTGTTTGGTGTTTGCTACCATATTTACAAGGATGCATTAAATAGTTAGCTGTTTTCTAAGGATCAAATTTGGTTTTATTAATTTTTTTTTTTGGCATGAGCCATTGTTTAGGTATCAATTCTTTTTCTGCTAAGGAAATTGTTCATAAGTTGAAGTAAATGATTAGCGTATGGAGAATCTTCGTTTACTTGTCATAAACTGTAATTAGACTAACCATTGGAGGTTCTAGATTATAAGTATTTATGTAGGTTTGTTAACTCATCATCACCTGTTCGAATTCAAGATCCATTCTGTTTTTAAGTTCTTTAGTATTTAGAAATTTCTAGTTTTTTTTTAAATAACTTTATTGCTAACTTAGCCCCCTATCATTTGAAGATAAAGGCTAGAGATTCTTGTTAATTTATCTTCCATAATGTAATGGTTTGGTTACTGTTTTCTAAAAAGCAAGAAGTCTGGAATCTTGTTGAAGTGGTCAAGAGGTTATGGGTCGATTCTTTTTTTCGTTTCAGCACCCACCTTGCAGAGTTAATAAATCCATGATGGTTATTTATTTAGAAATTAATTTCCTCCGAATTTTTTTTTATACTAAAAATGTTGTTGGGTCTAGTGGTTTGTGTCCTGAGAATAGTCGAAATATATTCTAAGGAGTTTAAGTTGCTCGAATTCTGCAGAGTTAACATGTATTTAATCTGAGTTCGAGTTCTGAGTTTTTTGATGAGCTGATTGACACTAGCATAGATTATTTGATTTTTTAACTGGGAAGGAAACTGGCTTGACATGTTTGGATGTGTTTCATTAACTTCTATTTCATACCACTATTTTAATGTCTTAGGTAATGGCATTCGACGAAACAACTTGATGTTCGCATCACGGACGAAGCCAGTAGACCGTGGGGGATAACCAACAGGAACGTGGTCATTTGTGAATATTTGCAGGATAAGATTTTTCAACCATAGTAAATATTATGGATGAAAGTGTAATATAAACCAAGGTTGGATCCATCTATTTCCTCTCTCTCTTTTCCTCATTTTGAAAGATTATTTTCTAAGTTATACAGTTGAAACTTTTGTTTCACCAAAATATCATCTTATAGGGGAAGAAAAATAGGTGTTGTGAATGACAGAAATCTTTTCATTTCATGTAATTGGTGTCTCTACTCTACCTGTATTCTTTCCTTTTCGTTAAGTGAAATATGGTCACACCTTTCAATC

mRNA sequence

GATAAATGATATGATCAGAATATTTGAGCCCCGTTCTATCCTCCAACCAAACCCCAATTTCATTCATAGCAAAGAGAGGCACCGCAACGACAGATTCCTAAAAGAAAAAGGAAAAAAAAAAATTGCAGCTTTAATTTCGCGGGATTCGTAGCTTTCGATTCATCGCCTCCAATTCCCTTTTCCAATCCTAACGCCCCTTAAAACGCGTAATCTCGATTTAGCTTCAAATCCCAAATATCTGTGTTCGTGATTTTTTGTTTAAATCCCAAAACGCGCATGTTTATAATTTCCGCATATTCTCCCAATTTCCATCCCAAGATCACTTCACTGCTCTCTTAAGGTGAAAATTATCAGTGTAAGGAATCCAGTTAACTCGAATTGAAGAGGGAGAGTACTGGTTCGTGGAGGCATTGCTACTTCTGCGAGCTTATGTACTCTCGTCTCCATTTGCCAAGAACTCCCCATTTGAATGCAAGTAAATAGCTAAATTAGTCTATCTGTTGGATTGGGGTTTATAAAGAGATTGGTACTCGGTTGGAGTTGGCACAATGGGTGCTGTTTGCTGCTGTTTGAGTATGGAAGATTTTGAAGACTATGTCAATCCTAATAGTTCAGCATATAGGAATTGCGCCTGTCTTAGCTGCTTCATTCAAAATTTCTTAAATGCACGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTCTCAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGACTCGGCAGGCAAATGGAAGGGATCTTCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTGAAGTTCCCAACAACTAAACCTCCCACCGGAACTTGGTATTCTTGTACATCCTCAGAAGAAGACGAGGATGTCTGCCCGACGTGTCTTGAAGAGTATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGACGAAACAACTTGATGTTCGCATCACGGACGAAGCCAGTAGACCGTGGGGGATAACCAACAGGAACGTGGTCATTTGTGAATATTTGCAGGATAAGATTTTTCAACCATAGTAAATATTATGGATGAAAGTGTAATATAAACCAAGGTTGGATCCATCTATTTCCTCTCTCTCTTTTCCTCATTTTGAAAGATTATTTTCTAAGTTATACAGTTGAAACTTTTGTTTCACCAAAATATCATCTTATAGGGGAAGAAAAATAGGTGTTGTGAATGACAGAAATCTTTTCATTTCATGTAATTGGTGTCTCTACTCTACCTGTATTCTTTCCTTTTCGTTAAGTGAAATATGGTCACACCTTTCAATC

Coding sequence (CDS)

ATGGGTGCTGTTTGCTGCTGTTTGAGTATGGAAGATTTTGAAGACTATGTCAATCCTAATAGTTCAGCATATAGGAATTGCGCCTGTCTTAGCTGCTTCATTCAAAATTTCTTAAATGCACGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTCTCAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGACTCGGCAGGCAAATGGAAGGGATCTTCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTGAAGTTCCCAACAACTAAACCTCCCACCGGAACTTGGTATTCTTGTACATCCTCAGAAGAAGACGAGGATGTCTGCCCGACGTGTCTTGAAGAGTATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGACGAAACAACTTGA

Protein sequence

MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNARDGLISRREKGSSHLHEESEPLRSEVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT

Homology

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BLAST of Sed0020163.2 vs. NCBI nr
Match: XP_008459404.1 (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo])

HSP 1 Score: 301.6 bits (771), Expect = 4.3e-78
Identity = 155/228 (67.98%), Postives = 161/228 (70.61%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLS+EDFEDYVNPNSS YRNC CLSCFIQ+FLNA                    
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           EVDTDSDSL SAGKW GS+CLEESKENLGKSSLKFP+TK  +G  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. NCBI nr
Match: XP_038889911.1 (E3 ubiquitin-protein ligase At3g02290 [Benincasa hispida])

HSP 1 Score: 301.6 bits (771), Expect = 4.3e-78
Identity = 155/228 (67.98%), Postives = 162/228 (71.05%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLS+EDFEDYVNPNSS YRNC CLSCFIQ+FL+A                    
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLSAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           +VDTDSDSL SAGKW GS+CLEESKENLGKSSLKFP+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. NCBI nr
Match: XP_022954554.1 (E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954561.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954569.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_023548844.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548852.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548861.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548868.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >KAG6602542.1 E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.4 bits (768), Expect = 9.7e-78
Identity = 154/228 (67.54%), Postives = 159/228 (69.74%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLSM+DFEDYVNPNSS YRNC CLSCFIQNFLNA                    
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           EVDTDSDSL SAGKW GS+CL+ESKENLGKSSLK P+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. NCBI nr
Match: XP_022134111.1 (E3 ubiquitin-protein ligase At3g02290 [Momordica charantia] >XP_022134112.1 E3 ubiquitin-protein ligase At3g02290 [Momordica charantia])

HSP 1 Score: 299.3 bits (765), Expect = 2.2e-77
Identity = 152/228 (66.67%), Postives = 161/228 (70.61%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLS+ED+EDYVNPNSS YRNC CLSCFIQNFLNA                    
Sbjct: 1   MGAVCCCLSVEDYEDYVNPNSSLYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           EVD DSDSLD+ GKW GS+CL+ESKENLGKSSLKFP+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDADSDSLDTPGKWNGSACLDESKENLGKSSLKFPSTKSTTGVGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. NCBI nr
Match: XP_022990150.1 (E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_022990152.1 E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_022990153.1 E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_022990154.1 E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima])

HSP 1 Score: 297.7 bits (761), Expect = 6.3e-77
Identity = 152/228 (66.67%), Postives = 159/228 (69.74%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLSM+DFEDYVNPNSS YRNC CLSCFIQNFLNA                    
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           EVDTDS+SL SAGKW GS+CL+ESKENLGKSSLK P+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSESLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. ExPASy Swiss-Prot
Match: Q8LE94 (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 7.8e-46
Identity = 109/230 (47.39%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-----RDG------------ 60
           MG V  C  +ED ++Y+NPNSS YRNC C+ C   NFLN      R G            
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  -----------------------------------LISRREKGSSHLHEESEPLRSEVDT 120
                                              L+SRREKGSSH HEE EPLRS+ D 
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDA 120

Query: 121 DSDSLDSAG-KW---KGSSCLEESKENL-GKSSLKF--PTTKPPTGTWYSCTSSEEDEDV 172
           DS+S    G KW   K +   ++SKE    KSSL+     +K       +     EDEDV
Sbjct: 121 DSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDV 180

[Close]

BLAST of Sed0020163.2 vs. ExPASy Swiss-Prot
Match: Q2HIJ8 (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 68  TDSDSLDSAGKWKGSSC-LEESKENLGKSSLKFPTTK---PPTGTWYSCTSS-----EED 127
           TDS+S+   G+  GSS     + E+LG+S  K   +     P  + +S         +E+
Sbjct: 78  TDSESI--KGRMSGSSFETLATCEDLGESDCKTLASSVILSPRKSDFSKHQGLKILVDEE 137

Query: 128 EDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDE 171
           ED CP C E+Y  ENP++ TKC H FHL C+ EW+ERSD CP+C K + FD+
Sbjct: 138 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187

[Close]

BLAST of Sed0020163.2 vs. ExPASy Swiss-Prot
Match: Q93ZF6 (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 50/153 (32.68%), Postives = 69/153 (45.10%), Query Frame = 0


Query: 27  CACLSCFIQNFLNARDGLISRREKGSSHLHEESEPLRSEVDTDSDSLDSAGKWKGSSCLE 86
           C CL    ++     + L   R   SS  +  S PL   +     ++ +         L 
Sbjct: 4   CCCLPSIPESSRTIDEHLPLSRATPSSLSNAYSSPLSPPIPL---AITNINLQTSPPKLP 63

Query: 87  ESKENLGKSSLKFPTTKPPTGTWY--SCTSSE------EDEDVCPTCLEEYTSENPKIVT 146
            ++ N  ++S       P   TW+    T  E      E  D CP CLEEY  +NPK++T
Sbjct: 64  RTQGNSSEASPGLTQVVPEKKTWHVDDLTDFELKKQYREAIDECPICLEEYEIDNPKLLT 123

Query: 147 KCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 172
           KC H FHL CI  WMERS+ CPVC K +   E+
Sbjct: 124 KCGHDFHLACILAWMERSEACPVCDKELVLTES 153

[Close]

BLAST of Sed0020163.2 vs. ExPASy Swiss-Prot
Match: Q4TU14 (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-09
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 114 SSEED---EDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVC 163
           +S++D   +D C  CLE +T ++P  VT C H +HL CI EW +RS  CP+C
Sbjct: 35  ASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPIC 86

[Close]

BLAST of Sed0020163.2 vs. ExPASy Swiss-Prot
Match: Q9ZT42 (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-09
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 119 EDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 173
           +D C  CLE +   +P  +T C H +HL CI EW +RS  CP+C + ++  + T
Sbjct: 30  DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPT 83

[Close]

BLAST of Sed0020163.2 vs. ExPASy TrEMBL
Match: A0A1S3CA28 (E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.1e-78
Identity = 155/228 (67.98%), Postives = 161/228 (70.61%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLS+EDFEDYVNPNSS YRNC CLSCFIQ+FLNA                    
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           EVDTDSDSL SAGKW GS+CLEESKENLGKSSLKFP+TK  +G  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. ExPASy TrEMBL
Match: A0A6J1GR85 (E3 ubiquitin-protein ligase At3g02290 OS=Cucurbita moschata OX=3662 GN=LOC111456789 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.7e-78
Identity = 154/228 (67.54%), Postives = 159/228 (69.74%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLSM+DFEDYVNPNSS YRNC CLSCFIQNFLNA                    
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           EVDTDSDSL SAGKW GS+CL+ESKENLGKSSLK P+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. ExPASy TrEMBL
Match: A0A6J1BYQ7 (E3 ubiquitin-protein ligase At3g02290 OS=Momordica charantia OX=3673 GN=LOC111006466 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.0e-77
Identity = 152/228 (66.67%), Postives = 161/228 (70.61%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLS+ED+EDYVNPNSS YRNC CLSCFIQNFLNA                    
Sbjct: 1   MGAVCCCLSVEDYEDYVNPNSSLYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           EVD DSDSLD+ GKW GS+CL+ESKENLGKSSLKFP+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDADSDSLDTPGKWNGSACLDESKENLGKSSLKFPSTKSTTGVGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. ExPASy TrEMBL
Match: A0A6J1JPB8 (E3 ubiquitin-protein ligase At3g02290 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487128 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 152/228 (66.67%), Postives = 159/228 (69.74%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLSM+DFEDYVNPNSS YRNC CLSCFIQNFLNA                    
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           EVDTDS+SL SAGKW GS+CL+ESKENLGKSSLK P+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSESLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. ExPASy TrEMBL
Match: A0A0A0KSH8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 153/228 (67.11%), Postives = 159/228 (69.74%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-------------------- 60
           MGAVCCCLS+EDFEDYVNPNSS YRNC CLSCFIQ+FLNA                    
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  ------------------------------------RDGLISRREKGSSHLHEESEPLRS 120
                                               RDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 173
           EVDTDSDSL S GK  GS+CLEESKENLGKSSLKFP+TK  +G  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSS-EDEDVCPT 180

[Close]

BLAST of Sed0020163.2 vs. TAIR 10
Match: AT5G15790.1 (RING/U-box superfamily protein )

HSP 1 Score: 187.6 bits (475), Expect = 8.5e-48
Identity = 102/231 (44.16%), Postives = 123/231 (53.25%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLN--------------------- 60
           MG V  C  ++DFEDY NP+SS  R+C C  C + NFLN                     
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQAT 60

Query: 61  ------------------------------------ARDGLISRREKGSSHLHEESEPLR 120
                                                RD L+SRR+KGSSH HEE+EPLR
Sbjct: 61  NVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLR 120

Query: 121 SEVDTDSDSLDSAG-KWKGSSCL--EESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDED 172
           S+ D DS+S    G KW     +  E+SKE   +SS +   ++  + +      + +DED
Sbjct: 121 SDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGLYITSDDED 180

[Close]

BLAST of Sed0020163.2 vs. TAIR 10
Match: AT5G15790.2 (RING/U-box superfamily protein )

HSP 1 Score: 187.6 bits (475), Expect = 8.5e-48
Identity = 102/231 (44.16%), Postives = 123/231 (53.25%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLN--------------------- 60
           MG V  C  ++DFEDY NP+SS  R+C C  C + NFLN                     
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQAT 60

Query: 61  ------------------------------------ARDGLISRREKGSSHLHEESEPLR 120
                                                RD L+SRR+KGSSH HEE+EPLR
Sbjct: 61  NVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLR 120

Query: 121 SEVDTDSDSLDSAG-KWKGSSCL--EESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDED 172
           S+ D DS+S    G KW     +  E+SKE   +SS +   ++  + +      + +DED
Sbjct: 121 SDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGLYITSDDED 180

[Close]

BLAST of Sed0020163.2 vs. TAIR 10
Match: AT3G02290.1 (RING/U-box superfamily protein )

HSP 1 Score: 184.9 bits (468), Expect = 5.5e-47
Identity = 109/230 (47.39%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNA-----RDG------------ 60
           MG V  C  +ED ++Y+NPNSS YRNC C+ C   NFLN      R G            
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  -----------------------------------LISRREKGSSHLHEESEPLRSEVDT 120
                                              L+SRREKGSSH HEE EPLRS+ D 
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDA 120

Query: 121 DSDSLDSAG-KW---KGSSCLEESKENL-GKSSLKF--PTTKPPTGTWYSCTSSEEDEDV 172
           DS+S    G KW   K +   ++SKE    KSSL+     +K       +     EDEDV
Sbjct: 121 DSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDV 180

[Close]

BLAST of Sed0020163.2 vs. TAIR 10
Match: AT5G38895.1 (RING/U-box superfamily protein )

HSP 1 Score: 181.4 bits (459), Expect = 6.1e-46
Identity = 98/220 (44.55%), Postives = 120/220 (54.55%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNARDGLISRR------------ 60
           MGA CCC  ++ FE YVNPN+S  RNC CL+CF+Q+F++    L SR             
Sbjct: 1   MGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPSTVETA 60

Query: 61  -----------------------------------EKGSSHLHEESEPLRSEVDTDSDSL 120
                                               KGSSH  EESEPLR + +  S++L
Sbjct: 61  TVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRFVKGSSHSGEESEPLRGDTEMSSEAL 120

Query: 121 -DSAGKWKGSSCLEESKENLGKSSLKFPTTK--PPTGTWYSCTSSEEDEDVCPTCLEEYT 171
            D   KW  S   + SKE   K S  F  +K  P    +Y   +  +DED+CPTCL++YT
Sbjct: 121 GDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYY---ADSDDEDICPTCLDDYT 180

[Close]

BLAST of Sed0020163.2 vs. TAIR 10
Match: AT5G38895.3 (RING/U-box superfamily protein )

HSP 1 Score: 181.4 bits (459), Expect = 6.1e-46
Identity = 98/220 (44.55%), Postives = 120/220 (54.55%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNARDGLISRR------------ 60
           MGA CCC  ++ FE YVNPN+S  RNC CL+CF+Q+F++    L SR             
Sbjct: 106 MGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPSTVETA 165

Query: 61  -----------------------------------EKGSSHLHEESEPLRSEVDTDSDSL 120
                                               KGSSH  EESEPLR + +  S++L
Sbjct: 166 TVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRFVKGSSHSGEESEPLRGDTEMSSEAL 225

Query: 121 -DSAGKWKGSSCLEESKENLGKSSLKFPTTK--PPTGTWYSCTSSEEDEDVCPTCLEEYT 171
            D   KW  S   + SKE   K S  F  +K  P    +Y   +  +DED+CPTCL++YT
Sbjct: 226 GDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYY---ADSDDEDICPTCLDDYT 285

The following BLAST results are available for this feature:

BLAST of Sed0020163.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459404.1	4.3e-78	67.98	PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo]	[more]
XP_038889911.1	4.3e-78	67.98	E3 ubiquitin-protein ligase At3g02290 [Benincasa hispida]	[more]
XP_022954554.1	9.7e-78	67.54	E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954561.1 E3 ub...	[more]
XP_022134111.1	2.2e-77	66.67	E3 ubiquitin-protein ligase At3g02290 [Momordica charantia] >XP_022134112.1 E3 u...	[more]
XP_022990150.1	6.3e-77	66.67	E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_02299015...	[more]

BLAST of Sed0020163.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LE94	7.8e-46	47.39	E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022...	[more]
Q2HIJ8	1.1e-15	41.07	Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q93ZF6	1.7e-13	32.68	E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 ...	[more]
Q4TU14	3.4e-09	46.15	E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 ...	[more]
Q9ZT42	5.8e-09	38.89	E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 ...	[more]

BLAST of Sed0020163.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CA28	2.1e-78	67.98	E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE...	[more]
A0A6J1GR85	4.7e-78	67.54	E3 ubiquitin-protein ligase At3g02290 OS=Cucurbita moschata OX=3662 GN=LOC111456...	[more]
A0A6J1BYQ7	1.0e-77	66.67	E3 ubiquitin-protein ligase At3g02290 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1JPB8	3.0e-77	66.67	E3 ubiquitin-protein ligase At3g02290 isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0KSH8	2.6e-76	67.11	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 P...	[more]

BLAST of Sed0020163.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15790.1	8.5e-48	44.16	RING/U-box superfamily protein	[more]
AT5G15790.2	8.5e-48	44.16	RING/U-box superfamily protein	[more]
AT3G02290.1	5.5e-47	47.39	RING/U-box superfamily protein	[more]
AT5G38895.1	6.1e-46	44.55	RING/U-box superfamily protein	[more]
AT5G38895.3	6.1e-46	44.55	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 122..162 e-value: 1.4E-6 score: 37.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 121..162 e-value: 2.8E-11 score: 43.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 122..162 score: 12.002429
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 102..170 e-value: 3.1E-15 score: 57.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..82
None	No IPR available	PANTHER	PTHR46463:SF43	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 37..171
None	No IPR available	PANTHER	PTHR46463:SF43	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..33
None	No IPR available	PANTHER	PTHR46463	ZINC FINGER, RING/FYVE/PHD-TYPE	coord: 1..33
None	No IPR available	PANTHER	PTHR46463	ZINC FINGER, RING/FYVE/PHD-TYPE	coord: 37..171
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 115..168

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0020163	Sed0020163	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020163.2-exon	Sed0020163.2-exon-LG03:1669336..1669714	exon
Sed0020163.2-exon	Sed0020163.2-exon-LG03:1671270..1671379	exon
Sed0020163.2-exon	Sed0020163.2-exon-LG03:1671557..1671818	exon
Sed0020163.2-exon	Sed0020163.2-exon-LG03:1672391..1672718	exon
Sed0020163.2-exon	Sed0020163.2-exon-LG03:1673378..1673717	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020163.2-three_prime_utr	Sed0020163.2-three_prime_utr-LG03:1669336..1669687	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020163.2-cds	Sed0020163.2-cds-LG03:1669688..1669714	CDS
Sed0020163.2-cds	Sed0020163.2-cds-LG03:1671270..1671379	CDS
Sed0020163.2-cds	Sed0020163.2-cds-LG03:1671557..1671818	CDS
Sed0020163.2-cds	Sed0020163.2-cds-LG03:1672391..1672510	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020163.2-five_prime_utr	Sed0020163.2-five_prime_utr-LG03:1672511..1672718	five_prime_UTR
Sed0020163.2-five_prime_utr	Sed0020163.2-five_prime_utr-LG03:1673378..1673717	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0020163.2	Sed0020163.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding