Clc08G00780 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G00780
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	TMV resistance protein N-like
Location	ClcChr08: 1411615 .. 1411905 (-)
RNA-Seq Expression	Clc08G00780
Synteny	Clc08G00780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCTTTTGTCAATTTGCAAATTGAGAATGGACTAATTCAACCATTACACATTCATACTATCACTGAGGACAGAATCATTTGGATGCATGAACGCCAGTTTGTTTGGCTCTATTACAGCCCAAAAAACACATATGGTGACGTTTTTCGCCACAGGTCTCATGTTTGGGCTATTATTGAAGCTGATACCCCAGACTTGACGGTAAGATGTTGTGGACTTCAATTAGTGTACAAGCAAGATGTGGAAATGATTGACAAGATGTTGATGGAAGCCATTCAGTCATCTTAA

mRNA sequence

ATGAACTCTTTTGTCAATTTGCAAATTGAGAATGGACTAATTCAACCATTACACATTCATACTATCACTGAGGACAGAATCATTTGGATGCATGAACGCCAGTTTGTTTGGCTCTATTACAGCCCAAAAAACACATATGGTGACGTTTTTCGCCACAGGTCTCATGTTTGGGCTATTATTGAAGCTGATACCCCAGACTTGACGGTAAGATGTTGTGGACTTCAATTAGTGTACAAGCAAGATGTGGAAATGATTGACAAGATGTTGATGGAAGCCATTCAGTCATCTTAA

Coding sequence (CDS)

ATGAACTCTTTTGTCAATTTGCAAATTGAGAATGGACTAATTCAACCATTACACATTCATACTATCACTGAGGACAGAATCATTTGGATGCATGAACGCCAGTTTGTTTGGCTCTATTACAGCCCAAAAAACACATATGGTGACGTTTTTCGCCACAGGTCTCATGTTTGGGCTATTATTGAAGCTGATACCCCAGACTTGACGGTAAGATGTTGTGGACTTCAATTAGTGTACAAGCAAGATGTGGAAATGATTGACAAGATGTTGATGGAAGCCATTCAGTCATCTTAA

Protein sequence

MNSFVNLQIENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLTVRCCGLQLVYKQDVEMIDKMLMEAIQSS

Homology

[Close]

BLAST of Clc08G00780 vs. NCBI nr
Match: XP_022141874.1 (TMV resistance protein N-like isoform X1 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 9.9e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENGLI+P HIHTITED  IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1574 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1633

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1634 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1661

[Close]

BLAST of Clc08G00780 vs. NCBI nr
Match: XP_022141875.1 (uncharacterized protein LOC111012131 isoform X2 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 9.9e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENGLI+P HIHTITED  IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1364 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1423

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1424 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1451

[Close]

BLAST of Clc08G00780 vs. NCBI nr
Match: XP_038889439.1 (TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 71/86 (82.56%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            IENGLI+PLH+H+ITEDR IW+HERQFVWLYYSP+NTYG++FRHRS +WAIIEADTPDL 
Sbjct: 1584 IENGLIEPLHLHSITEDRFIWLHERQFVWLYYSPRNTYGEIFRHRSCIWAIIEADTPDLM 1643

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQ 95
            VRCCGLQLVYKQD+E+IDK+LM+AIQ
Sbjct: 1644 VRCCGLQLVYKQDMEVIDKILMKAIQ 1669

[Close]

BLAST of Clc08G00780 vs. NCBI nr
Match: XP_038890618.1 (TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            IENGLI PLHIHTI ED +IW+HERQFVWLYYSP+  YG +FRHRSHVWAIIEAD+PDL 
Sbjct: 1582 IENGLINPLHIHTIIEDTVIWLHERQFVWLYYSPRKKYGQIFRHRSHVWAIIEADSPDLM 1641

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
             +CCGLQLVYKQ+V+MIDK+LMEAIQSS
Sbjct: 1642 AKCCGLQLVYKQNVQMIDKILMEAIQSS 1669

[Close]

BLAST of Clc08G00780 vs. NCBI nr
Match: XP_008463577.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 6.7e-36
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            IENGLI PLHIH+I ED++IW+HERQFVWLYYSP+  YG++FRHRSHVWAIIEADTPDL 
Sbjct: 1590 IENGLINPLHIHSIIEDKVIWLHERQFVWLYYSPRKKYGEIFRHRSHVWAIIEADTPDLV 1649

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            V CCGLQ+VYK+DV +IDK+LMEAIQSS
Sbjct: 1650 VICCGLQVVYKKDVRVIDKILMEAIQSS 1677

[Close]

BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A6J1CK08 (TMV resistance protein N-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012131 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENGLI+P HIHTITED  IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1574 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1633

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1634 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1661

[Close]

BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A6J1CJB7 (uncharacterized protein LOC111012131 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012131 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENGLI+P HIHTITED  IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1364 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1423

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1424 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1451

[Close]

BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A1S3CJJ5 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103501686 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            IENGLI PLHIH+I ED++IW+HERQFVWLYYSP+  YG++FRHRSHVWAIIEADTPDL 
Sbjct: 1590 IENGLINPLHIHSIIEDKVIWLHERQFVWLYYSPRKKYGEIFRHRSHVWAIIEADTPDLV 1649

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            V CCGLQ+VYK+DV +IDK+LMEAIQSS
Sbjct: 1650 VICCGLQVVYKKDVRVIDKILMEAIQSS 1677

[Close]

BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A6J1IBG2 (TMV resistance protein N-like OS=Cucurbita maxima OX=3661 GN=LOC111472024 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENG+I P+HIHTITEDR IW+HERQF+WLYYSP+ TYG++ RHRSH+WA IEADTPD+T
Sbjct: 1570 VENGVIHPIHIHTITEDRFIWLHERQFLWLYYSPRQTYGNIIRHRSHIWATIEADTPDMT 1629

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQS 96
            VR CGLQLVY QDVE ID +LMEAI+S
Sbjct: 1630 VRGCGLQLVYNQDVERIDNILMEAIES 1656

[Close]

BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A6J1EC12 (TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432680 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENG+I P+HIHT+TEDR IW+HERQF+W YYSP+ TYG++ RHRSH+WA IEADTPD+T
Sbjct: 1586 VENGVIHPIHIHTVTEDRFIWLHERQFLWFYYSPRQTYGNILRHRSHIWATIEADTPDMT 1645

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQS 96
            VR CGLQLVY QDVE IDK+LMEAI+S
Sbjct: 1646 VRGCGLQLVYNQDVERIDKILMEAIES 1672

The following BLAST results are available for this feature:

BLAST of Clc08G00780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141874.1	9.9e-40	86.36	TMV resistance protein N-like isoform X1 [Momordica charantia]	[more]
XP_022141875.1	9.9e-40	86.36	uncharacterized protein LOC111012131 isoform X2 [Momordica charantia]	[more]
XP_038889439.1	6.0e-37	82.56	TMV resistance protein N-like [Benincasa hispida]	[more]
XP_038890618.1	3.0e-36	80.68	TMV resistance protein N-like [Benincasa hispida]	[more]
XP_008463577.1	6.7e-36	79.55	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]

BLAST of Clc08G00780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G00780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CK08	4.8e-40	86.36	TMV resistance protein N-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1CJB7	4.8e-40	86.36	uncharacterized protein LOC111012131 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3CJJ5	3.2e-36	79.55	TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103501686 PE=4 SV=1	[more]
A0A6J1IBG2	1.8e-34	75.86	TMV resistance protein N-like OS=Cucurbita maxima OX=3661 GN=LOC111472024 PE=4 S...	[more]
A0A6J1EC12	1.8e-34	74.71	TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Clc08G00780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G00780.1	Clc08G00780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity