Sed0015482 (gene) Chayote v1

Overview
NameSed0015482
Typegene
OrganismSechium edule (Chayote v1)
DescriptionIleal sodium/bile acid cotransporter, putative
LocationLG03: 6298632 .. 6299548 (+)
RNA-Seq ExpressionSed0015482
SyntenySed0015482
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAAGTGAAAGGAAAAATGCAATTTCTATGAAAATTTCTACAATTTGTAGTAGAACTTCTATAAATACACTTTAAAAAAAATGTTTTAGAATAACAGAAAATTCTGTCTTTATATCTAGAATACTCCAATCAACATTAAAACAGGAGAAAAAAAAAAATTCAAAATTGGTCCAAGAGTCCCTTGGAAGTATTGAGAAAATTTTCAATTTGTTATTGTTTGTTTTTCCCAATGGCTTCAACTTCACAACAAGCCTCAGCGAATCTGAATGCCCTTTTCTCCCTTATCTCTACAATCAATCGAAGAAACTATGGAATCAGCTTTTTTGCCACTGCATCAGACTGTCTTCCAATTTGCATGCATCAGCAAAGACCTAAACCAGCCAATGACTCTCAGAATCTTGGGAAGACGATTCTTGGCCTTACTTTTCAGGCAGTTCTGGCTTTGTTCATCAGCACACCAAATTCATGTTCTCCACTTTTGGTACATCTTTTTGCTGCTGCTGTGTTGATTAGCTTTGCAGTTTCATTTGCAGGTCTTCTCCTTCAAAACACGTTCCAGAACCTCGCGCGTTTCTTTGAAAAGATCGGTGCCCTTTTCGCTGCATTTGGTGTGTGCATCATATCGAGTCTTCTTCTTGTTCATCAGGACTTTGCTTGGATCTGCTGGTTGGCTTGTGCCTTCTTTTTTATTGTCTTTCTTTTATCATTCAAGTGATCTTCTTTTACAGCAATTCTCAATCCTGTTAGAAGTAGAATAATGGATATCCAATTCTATTGGATATAGGATCAAATAAGATAGGGTAGAAAGGGGATAGGTCTACATTGAGAGATTGAGTGAGTGATTCATCTCGGGATTGAGAGTGTTCTTAAGATAGGAAGGGTCCAAGTACCTTGAACACTTGGTTTATCTTTGAT

mRNA sequence

CAAAAAGTGAAAGGAAAAATGCAATTTCTATGAAAATTTCTACAATTTGTAGTAGAACTTCTATAAATACACTTTAAAAAAAATGTTTTAGAATAACAGAAAATTCTGTCTTTATATCTAGAATACTCCAATCAACATTAAAACAGGAGAAAAAAAAAAATTCAAAATTGGTCCAAGAGTCCCTTGGAAGTATTGAGAAAATTTTCAATTTGTTATTGTTTGTTTTTCCCAATGGCTTCAACTTCACAACAAGCCTCAGCGAATCTGAATGCCCTTTTCTCCCTTATCTCTACAATCAATCGAAGAAACTATGGAATCAGCTTTTTTGCCACTGCATCAGACTGTCTTCCAATTTGCATGCATCAGCAAAGACCTAAACCAGCCAATGACTCTCAGAATCTTGGGAAGACGATTCTTGGCCTTACTTTTCAGGCAGTTCTGGCTTTGTTCATCAGCACACCAAATTCATGTTCTCCACTTTTGGTACATCTTTTTGCTGCTGCTGTGTTGATTAGCTTTGCAGTTTCATTTGCAGGTCTTCTCCTTCAAAACACGTTCCAGAACCTCGCGCGTTTCTTTGAAAAGATCGGTGCCCTTTTCGCTGCATTTGGTGTGTGCATCATATCGAGTCTTCTTCTTGTTCATCAGGACTTTGCTTGGATCTGCTGGTTGGCTTGTGCCTTCTTTTTTATTGTCTTTCTTTTATCATTCAAGTGATCTTCTTTTACAGCAATTCTCAATCCTGTTAGAAGTAGAATAATGGATATCCAATTCTATTGGATATAGGATCAAATAAGATAGGGTAGAAAGGGGATAGGTCTACATTGAGAGATTGAGTGAGTGATTCATCTCGGGATTGAGAGTGTTCTTAAGATAGGAAGGGTCCAAGTACCTTGAACACTTGGTTTATCTTTGAT

Coding sequence (CDS)

ATGGCTTCAACTTCACAACAAGCCTCAGCGAATCTGAATGCCCTTTTCTCCCTTATCTCTACAATCAATCGAAGAAACTATGGAATCAGCTTTTTTGCCACTGCATCAGACTGTCTTCCAATTTGCATGCATCAGCAAAGACCTAAACCAGCCAATGACTCTCAGAATCTTGGGAAGACGATTCTTGGCCTTACTTTTCAGGCAGTTCTGGCTTTGTTCATCAGCACACCAAATTCATGTTCTCCACTTTTGGTACATCTTTTTGCTGCTGCTGTGTTGATTAGCTTTGCAGTTTCATTTGCAGGTCTTCTCCTTCAAAACACGTTCCAGAACCTCGCGCGTTTCTTTGAAAAGATCGGTGCCCTTTTCGCTGCATTTGGTGTGTGCATCATATCGAGTCTTCTTCTTGTTCATCAGGACTTTGCTTGGATCTGCTGGTTGGCTTGTGCCTTCTTTTTTATTGTCTTTCTTTTATCATTCAAGTGA

Protein sequence

MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK
Homology
BLAST of Sed0015482 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 8.0e-42
Identity = 102/164 (62.20%), Postives = 122/164 (74.39%), Query Frame = 0

Query: 1   MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMH-QQRPK-PANDSQNLG 60
           MASTS Q S +++A  S I TI++RNYG+    T S+CLP+ +  QQ P+  A+ SQ LG
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60

Query: 61  KTILGLTFQAVLALFIST-PNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARFFE 120
           K IL L+FQAVLALFIS+ P S  PLL+H FAAAV ISFAVSFA L L N+F   A  FE
Sbjct: 61  KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120

Query: 121 KIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK 162
           K+GALF+AFGVC I+S LLVHQ+FAWICW+AC F  IVF LSFK
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of Sed0015482 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-38
Identity = 96/153 (62.75%), Postives = 114/153 (74.51%), Query Frame = 0

Query: 12  LNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQA 71
           +N L+S I+ IN RN  I       + LPIC+  QRP PAN S+   N+GKTILGLTFQA
Sbjct: 1   MNELYSFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQA 60

Query: 72  VLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARFFEKIGALFAAFGV 131
           VLALFI++PNS  PLL HLFAAAVLISFAVSFAG+ LQN F  +A  FEKIGAL AA GV
Sbjct: 61  VLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGV 120

Query: 132 CIISSLLLVHQDFAWICWLACAFFFIVFLLSFK 162
           CI++S LL+HQ+FAWI WLA  F  + F+LSF+
Sbjct: 121 CIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145

BLAST of Sed0015482 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36
Identity = 97/164 (59.15%), Postives = 118/164 (71.95%), Query Frame = 0

Query: 1   MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NL 60
           M S+SQQ S ++N L+SLI++IN RN  I       + LPIC+  Q   PAN S+   N+
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEI-------NGLPICIIMQTASPANSSKTENNV 60

Query: 61  GKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARFFE 120
           G TILGLTFQAVLALFI++  S  PLL HLF AAVLISFAVSF G+ LQ+ F  +A  FE
Sbjct: 61  GTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFE 120

Query: 121 KIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK 162
           KIGAL AA GVCI++S LL+HQ+FAWI WLAC F  + FLLSF+
Sbjct: 121 KIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

BLAST of Sed0015482 vs. NCBI nr
Match: XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])

HSP 1 Score: 137.9 bits (346), Expect = 7.8e-29
Identity = 79/124 (63.71%), Postives = 88/124 (70.97%), Query Frame = 0

Query: 1   MASTSQQASANLNALFSLISTINRRNYGISFF------ATASDCLPICMHQQRPKPANDS 60
           MAST QQ S ++NAL S I+ IN RN GIS F      +T SDCLPIC+  QRP PA  S
Sbjct: 1   MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSS 60

Query: 61  QNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLAR 119
           Q+LGKTILGLTFQAVLALFIS P+S   L   LF AAVLISFAVSFAGL LQ  +  +A 
Sbjct: 61  QSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMAL 120

BLAST of Sed0015482 vs. NCBI nr
Match: KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-28
Identity = 77/131 (58.78%), Postives = 89/131 (67.94%), Query Frame = 0

Query: 35  ASDCLPICMHQQRPKPANDS----QNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAA 94
           ASD LP      RP P  DS     NLGK + GLTFQAVLALFIS P SC PLL+H+FAA
Sbjct: 21  ASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAA 80

Query: 95  AVLISFAVSFAGLLLQNTFQNLARFFEKIGALFAAFGVCIISSLLLVHQDFAWICWLACA 154
           A+LISFA+S A L LQ  +  +A    KIGAL AA G C I+S+LL HQ F+WI WLAC 
Sbjct: 81  AMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACG 140

Query: 155 FFFIVFLLSFK 162
           F  + F+LSFK
Sbjct: 141 FALMAFILSFK 151

BLAST of Sed0015482 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.9e-42
Identity = 102/164 (62.20%), Postives = 122/164 (74.39%), Query Frame = 0

Query: 1   MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMH-QQRPK-PANDSQNLG 60
           MASTS Q S +++A  S I TI++RNYG+    T S+CLP+ +  QQ P+  A+ SQ LG
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60

Query: 61  KTILGLTFQAVLALFIST-PNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARFFE 120
           K IL L+FQAVLALFIS+ P S  PLL+H FAAAV ISFAVSFA L L N+F   A  FE
Sbjct: 61  KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120

Query: 121 KIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK 162
           K+GALF+AFGVC I+S LLVHQ+FAWICW+AC F  IVF LSFK
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of Sed0015482 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 96/153 (62.75%), Postives = 114/153 (74.51%), Query Frame = 0

Query: 12  LNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NLGKTILGLTFQA 71
           +N L+S I+ IN RN  I       + LPIC+  QRP PAN S+   N+GKTILGLTFQA
Sbjct: 1   MNELYSFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQA 60

Query: 72  VLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARFFEKIGALFAAFGV 131
           VLALFI++PNS  PLL HLFAAAVLISFAVSFAG+ LQN F  +A  FEKIGAL AA GV
Sbjct: 61  VLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGV 120

Query: 132 CIISSLLLVHQDFAWICWLACAFFFIVFLLSFK 162
           CI++S LL+HQ+FAWI WLA  F  + F+LSF+
Sbjct: 121 CIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145

BLAST of Sed0015482 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 6.4e-37
Identity = 97/164 (59.15%), Postives = 118/164 (71.95%), Query Frame = 0

Query: 1   MASTSQQASANLNALFSLISTINRRNYGISFFATASDCLPICMHQQRPKPANDSQ---NL 60
           M S+SQQ S ++N L+SLI++IN RN  I       + LPIC+  Q   PAN S+   N+
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEI-------NGLPICIIMQTASPANSSKTENNV 60

Query: 61  GKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARFFE 120
           G TILGLTFQAVLALFI++  S  PLL HLF AAVLISFAVSF G+ LQ+ F  +A  FE
Sbjct: 61  GTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFE 120

Query: 121 KIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK 162
           KIGAL AA GVCI++S LL+HQ+FAWI WLAC F  + FLLSF+
Sbjct: 121 KIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

BLAST of Sed0015482 vs. ExPASy TrEMBL
Match: A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-29
Identity = 79/124 (63.71%), Postives = 88/124 (70.97%), Query Frame = 0

Query: 1   MASTSQQASANLNALFSLISTINRRNYGISFF------ATASDCLPICMHQQRPKPANDS 60
           MAST QQ S ++NAL S I+ IN RN GIS F      +T SDCLPIC+  QRP PA  S
Sbjct: 1   MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSS 60

Query: 61  QNLGKTILGLTFQAVLALFISTPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLAR 119
           Q+LGKTILGLTFQAVLALFIS P+S   L   LF AAVLISFAVSFAGL LQ  +  +A 
Sbjct: 61  QSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMAL 120

BLAST of Sed0015482 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.9e-26
Identity = 81/166 (48.80%), Postives = 101/166 (60.84%), Query Frame = 0

Query: 1   MAST-SQQASANLNALFSLISTINRRNYGIS---FFATASDCLPICMHQQRPKPANDSQN 60
           MA T   + S ++N L SLI  +  RN GIS   +   ASDCLPI +  QRP P N  Q 
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ- 60

Query: 61  LGKTILGLTFQAVLALFIS-TPNSCSPLLVHLFAAAVLISFAVSFAGLLLQNTFQNLARF 120
            G T L LTFQA++ LF+S  P+S SPL   LFAA +L SF  S+ G++LQ  F   A+ 
Sbjct: 61  FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQL 120

Query: 121 FEKIGALFAAFGVCIISSLLLVHQDFAWICWLACAFFFIVFLLSFK 162
            +  GALFAA G CII SLLL + +F WICWLA       F++SFK
Sbjct: 121 LQTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49808.18.0e-4262.20hypothetical protein Csa_004650 [Cucumis sativus][more]
KAA0050246.12.4e-3862.75putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KGN49803.11.3e-3659.15hypothetical protein Csa_004681 [Cucumis sativus][more]
XP_022146444.17.8e-2963.71uncharacterized protein LOC111015658 [Momordica charantia][more]
KAG6579137.13.9e-2858.78hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJP23.9e-4262.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
A0A5A7U7U11.2e-3862.75Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KJN86.4e-3759.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1[more]
A0A6J1CY583.8e-2963.71uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0KQ033.9e-2648.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015482.1Sed0015482.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane