Clc06G01780 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G01780
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosome biogenesis NEP1-like protein
Location	ClcChr06: 1648239 .. 1650187 (-)
RNA-Seq Expression	Clc06G01780
Synteny	Clc06G01780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGAAATTGTGAAATCCAAATCCCACAACACATGGCTTTGTTCAGAACCTCTCTCACAGTAAGCCTCACATTGCTTCCAATCCATTCTGTTTTTCTTCTCTTTTCAATATCATATAATATGATATAATTGTGTGACTATGTATTATTAATTTAATTAACGTGTGTGTGTGTGTATATATGTATATAGATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGGAAGCGTCGTCTCGCATCGTCCAATACAACCCCAGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTAATAAGTTAATAAACAAAAACCATTATAGTATATGTAATTAATTAGAATGTTGTTGGTGCATGTCATGTGGATTGGTTAATTTGATGATAATATATATAATAATATAATATGGTGGTAAACAGGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGGCGAGTATGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTGTGTCGATCGGAACCCACACGGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACAAGAAGAAGAGGGAAAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAACGACACCAAGACGCTACCGGATCCCGTTCACCCCGACCCGTTTACCAGGTCAACCCCTTTTCTTTCCCTCATTTCCTTGACAGACAAATAACATTTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTCTTTCTTTAACTAATTTATTATTTTTAATTTATTTTAAGAGAATTTATTATTAATAGAAAAAATATCATACTATTTATAAATATATAAAAAAAAATTGTGTAAAATTTTATTACATTTTCTATATTTAAAAATAATTCATATTTTGATAAATAATAATTAGATTTTTAATAGATTTTCAAGGAGATAAATCTTAGAGTGTTGATGTAATTAAATTTAACTGTAATTTATGAACTTAAACTTTTGGATCTTGGACTTATACAAACAACAAGGTTTAATTCTTAATCTTTAGGTTTTTGTTTTCTTTTAGAGAGAGAATAGATAAGTAGGAGGGCATTAACGTAAGCTTAAGAGCTTCCATTAGGTGCAACTTGGGTTTCACAGAAGTTGCAAGAAAATTTTGGGAGAATCTACCCATATTATTATTATAAATTTTAAAATATAAGATTAAGATATTGCCTTTTGACACCCTTAACTTTATGTCTACATAAAAAAAAAAAAAAAAAAAAAATTACAAAAATTATCTTGGGCAGAGATCGAATGGCATCAAAAGCTAGAATTTTTCTTTTCCGAAAAAGATAATTTTCTTTTTGTAATTGGAGGAATACATGGAAATAAATATAAACTTGAACCAAGTATGAGTTGTTACAAATGATTTTTTGTTTTTTTAATTATAGGAAAAAACAAAAATGGTCTCCCATCCTATAAAATATATTTAGAGCTGAAAATTTAAGAATATTAATGCATGGATGCACTTGCGCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGTCGTTGAACAACAACGACCACCTTTGTAGTGTCAACTCGTTTATGAAAGAAACATCATCGTCCCAACTATTTTATTTTATTTTTTTTATTTTTCTTTGTGATGTGTATATATATTTATATATAATGTGGGCCCTTCTGCTTCTTCTTTCCTCTTCACTTTCTAGTATTGGGTGAAGACTGAAGTTCAGTACTAGGGAATGTGGCCCCCTCATTTGTTTAATTAATTTTCTTTTTTCTATAATAAACCCAATTTATTTGGAAAACCCAAACCCGGGCTTGGATTAATAGAAAGAATATCCTTGTTTTAAGG

mRNA sequence

GGTGAAATTGTGAAATCCAAATCCCACAACACATGGCTTTGTTCAGAACCTCTCTCACAATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGGAAGCGTCGTCTCGCATCGTCCAATACAACCCCAGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTAATAAGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGGCGAGTATGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTGTGTCGATCGGAACCCACACGGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACAAGAAGAAGAGGGAAAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAACGACACCAAGACGCTACCGGATCCCGTTCACCCCGACCCGTTTACCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGTCGTTGAACAACAACGACCACCTTTGTAGTGTCAACTCGTTTATGAAAGAAACATCATCGTCCCAACTATTTTATTTTATTTTTTTTATTTTTCTTTGTGATGTGTATATATATTTATATATAATGTGGGCCCTTCTGCTTCTTCTTTCCTCTTCACTTTCTAGTATTGGGTGAAGACTGAAGTTCAGTACTAGGGAATGTGGCCCCCTCATTTGTTTAATTAATTTTCTTTTTTCTATAATAAACCCAATTTATTTGGAAAACCCAAACCCGGGCTTGGATTAATAGAAAGAATATCCTTGTTTTAAGG

Coding sequence (CDS)

ATGGCTTTGTTCAGAACCTCTCTCACAATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGGAAGCGTCGTCTCGCATCGTCCAATACAACCCCAGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTAATAAGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGGCGAGTATGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTGTGTCGATCGGAACCCACACGGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACAAGAAGAAGAGGGAAAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAACGACACCAAGACGCTACCGGATCCCGTTCACCCCGACCCGTTTACCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGTCGTTGA

Protein sequence

MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

Homology

[Close]

BLAST of Clc06G01780 vs. NCBI nr
Match: XP_038906484.1 (uncharacterized protein LOC120092464 [Benincasa hispida])

HSP 1 Score: 271.6 bits (693), Expect = 4.7e-69
Identity = 145/173 (83.82%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAAN----IENASSSSSSNKGGSS 60
           MALF TSLT  NK+WK+MLVG+RI+GKRRLASS T PAAN      ++SSSSSS+KGGSS
Sbjct: 1   MALFTTSLT--NKVWKAMLVGSRIQGKRRLASSTTAPAANNIQKASSSSSSSSSSKGGSS 60

Query: 61  ASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVI 120
           +SEYMKGEYAPIYIV+GMVAVAVSIGTHTAKQQLLHSPVVN +KKKRESIPEV+DPDT+I
Sbjct: 61  SSEYMKGEYAPIYIVVGMVAVAVSIGTHTAKQQLLHSPVVNFSKKKRESIPEVDDPDTII 120

Query: 121 TSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 170
            SA+KFINKSFLRKVAHIQ DTKTLPDPVHP+PFTRPRNAETLKTAGVDPTRR
Sbjct: 121 NSANKFINKSFLRKVAHIQEDTKTLPDPVHPNPFTRPRNAETLKTAGVDPTRR 171

[Close]

BLAST of Clc06G01780 vs. NCBI nr
Match: XP_008459927.1 (PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-68
Identity = 145/169 (85.80%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEY 60
           M+LFRTSL   NKMWKSMLVGTRI+G RR ASS T P+AN   +SSSSSS+KGGS  SEY
Sbjct: 1   MSLFRTSLA--NKMWKSMLVGTRIQGNRRFASSTTAPSANA--SSSSSSSSKGGSGGSEY 60

Query: 61  MKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSAD 120
           MKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSAD
Sbjct: 61  MKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSAD 120

Query: 121 KFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 170
           KFINKSFLRKVAHIQ+DTKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 KFINKSFLRKVAHIQDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 165

[Close]

BLAST of Clc06G01780 vs. NCBI nr
Match: XP_004140656.2 (uncharacterized protein LOC101206372 [Cucumis sativus] >KGN46404.1 hypothetical protein Csa_005593 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-68
Identity = 144/170 (84.71%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAA-NIENASSSSSSNKGGSSASE 60
           M LFRTSL   NKMWKSMLV TRI+G RR +SS TTP+A NI+NASS SSS+ GGS  SE
Sbjct: 1   MGLFRTSLA--NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSE 60

Query: 61  YMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSA 120
           YMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSA
Sbjct: 61  YMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSA 120

Query: 121 DKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 170
           DKFINKSFLRKVAHIQ+DTKTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 121 DKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Clc06G01780 vs. NCBI nr
Match: KAA0039866.1 (putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa] >TYK24635.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 251.9 bits (642), Expect = 3.9e-63
Identity = 133/152 (87.50%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 18  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAV 77
           MLVGTRI+G RR ASS T P+AN  ++SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSAN-ASSSSSSSSSKGGSGESEYMKGEYAPIYIVMGMVAV 60

Query: 78  AVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQND 137
            VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+D
Sbjct: 61  VVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDD 120

Query: 138 TKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 170
           TKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 151

[Close]

BLAST of Clc06G01780 vs. NCBI nr
Match: ADN33694.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 248.4 bits (633), Expect = 4.3e-62
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 18  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAV 77
           MLVGTRI+G RR ASS T P+AN   +SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANA--SSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVAV 60

Query: 78  AVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQND 137
            VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+D
Sbjct: 61  VVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDD 120

Query: 138 TKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 170
           TKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Clc06G01780 vs. ExPASy TrEMBL
Match: A0A0A0KC39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091280 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 144/170 (84.71%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAA-NIENASSSSSSNKGGSSASE 60
           M LFRTSL   NKMWKSMLV TRI+G RR +SS TTP+A NI+NASS SSS+ GGS  SE
Sbjct: 1   MGLFRTSLA--NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSE 60

Query: 61  YMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSA 120
           YMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSA
Sbjct: 61  YMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSA 120

Query: 121 DKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 170
           DKFINKSFLRKVAHIQ+DTKTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 121 DKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Clc06G01780 vs. ExPASy TrEMBL
Match: A0A1S3CBE5 (uncharacterized protein LOC103498899 OS=Cucumis melo OX=3656 GN=LOC103498899 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 145/169 (85.80%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEY 60
           M+LFRTSL   NKMWKSMLVGTRI+G RR ASS T P+AN   +SSSSSS+KGGS  SEY
Sbjct: 1   MSLFRTSLA--NKMWKSMLVGTRIQGNRRFASSTTAPSANA--SSSSSSSSKGGSGGSEY 60

Query: 61  MKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSAD 120
           MKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSAD
Sbjct: 61  MKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSAD 120

Query: 121 KFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 170
           KFINKSFLRKVAHIQ+DTKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 KFINKSFLRKVAHIQDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 165

[Close]

BLAST of Clc06G01780 vs. ExPASy TrEMBL
Match: A0A5D3DLZ1 (Putative Ribosome biogenesis protein NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001820 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.9e-63
Identity = 133/152 (87.50%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 18  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAV 77
           MLVGTRI+G RR ASS T P+AN  ++SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSAN-ASSSSSSSSSKGGSGESEYMKGEYAPIYIVMGMVAV 60

Query: 78  AVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQND 137
            VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+D
Sbjct: 61  VVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDD 120

Query: 138 TKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 170
           TKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 151

[Close]

BLAST of Clc06G01780 vs. ExPASy TrEMBL
Match: E5GB52 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.1e-62
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 18  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAV 77
           MLVGTRI+G RR ASS T P+AN   +SSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANA--SSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVAV 60

Query: 78  AVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQND 137
            VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+D
Sbjct: 61  VVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDD 120

Query: 138 TKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 170
           TKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Clc06G01780 vs. ExPASy TrEMBL
Match: A0A6J1D5I0 (uncharacterized protein LOC111017496 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017496 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.5e-54
Identity = 124/159 (77.99%), Postives = 132/159 (83.02%), Query Frame = 0


Query: 11  QNKMWKSMLVG--TRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPI 70
           + K+WKSMLVG  +RIEGKR  ASS T        ASSSSSS       SEYMKGEYAPI
Sbjct: 5   RTKLWKSMLVGIPSRIEGKRCFASSTT--------ASSSSSSK------SEYMKGEYAPI 64

Query: 71  YIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFL 130
           YIVMGMV VAV+IGTHTAKQQLLHSPVV L+KKKRESIPEV+DPDTVITSADKF+NKSFL
Sbjct: 65  YIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFL 124

Query: 131 RKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPT 168
           RKVAHIQ+  KTL DP HPDPFTRPRNAETLKTAGVDPT
Sbjct: 125 RKVAHIQDHNKTLRDPQHPDPFTRPRNAETLKTAGVDPT 149

[Close]

BLAST of Clc06G01780 vs. TAIR 10
Match: AT1G63060.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07330.1); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.8 bits (286), Expect = 6.9e-26
Identity = 64/148 (43.24%), Postives = 90/148 (60.81%), Query Frame = 0


Query: 20  VGTRIEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAV 79
           VG +  G RR A++    A    N  S              + GE+AP+ I+ G V +AV
Sbjct: 12  VGNQFGGSRRFATTVADGAKQTYNKFS--------------IMGEFAPVAIIGGFVGLAV 71

Query: 80  SIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTK 139
            +  H+ KQQL+H+P ++  K +R ++ EV+DP+  ++SADKFINKS+LRKV  IQ+ +K
Sbjct: 72  LMAGHSLKQQLMHAPAISTRKNRRAAVAEVDDPENCVSSADKFINKSWLRKVGQIQDKSK 131

Query: 140 T-LPDPVHPDPFTRPRNAETLKTAGVDP 167
             L DP  P+PFT PRNAETL + GV P
Sbjct: 132 AILSDPTRPNPFTTPRNAETLNSVGVAP 145

[Close]

BLAST of Clc06G01780 vs. TAIR 10
Match: AT5G07330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 50/145 (34.48%), Postives = 87/145 (60.00%), Query Frame = 0


Query: 24  IEGKRRLASSNTTPAANIENASSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGT 83
           ++  R    + T P +   + +++    +  ++ +   KG++ P+Y+ +G+++++V+ G 
Sbjct: 13  VQRLRTYTKATTVPRSKAYSTAATEYGGQRTATTAAATKGDFTPVYVSIGLISLSVTFGV 72

Query: 84  HTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTK--TL 143
           +TA   L  +P V +NKK RE++PE+EDPD V+  AD+F N+S+ RK+AH+Q   K   +
Sbjct: 73  YTAYLHLHENPGVRVNKKMRETVPEIEDPDRVLNEADRFANRSWFRKIAHVQEFDKQDVI 132

Query: 144 PDPVHPDPFTRPRNAETLKTAGVDP 167
            DP+  D F     A TLK  GVDP
Sbjct: 133 SDPIRKDQFAHKPRALTLKDVGVDP 157

The following BLAST results are available for this feature:

BLAST of Clc06G01780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906484.1	4.7e-69	83.82	uncharacterized protein LOC120092464 [Benincasa hispida]	[more]
XP_008459927.1	2.3e-68	85.80	PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]	[more]
XP_004140656.2	2.3e-68	84.71	uncharacterized protein LOC101206372 [Cucumis sativus] >KGN46404.1 hypothetical ...	[more]
KAA0039866.1	3.9e-63	87.50	putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa] >TYK24...	[more]
ADN33694.1	4.3e-62	86.84	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of Clc06G01780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G01780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC39	1.1e-68	84.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091280 PE=4 SV=1	[more]
A0A1S3CBE5	1.1e-68	85.80	uncharacterized protein LOC103498899 OS=Cucumis melo OX=3656 GN=LOC103498899 PE=...	[more]
A0A5D3DLZ1	1.9e-63	87.50	Putative Ribosome biogenesis protein NEP1-like OS=Cucumis melo var. makuwa OX=11...	[more]
E5GB52	2.1e-62	86.84	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1D5I0	3.5e-54	77.99	uncharacterized protein LOC111017496 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Clc06G01780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63060.1	6.9e-26	43.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G07330.1	1.3e-21	34.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..169
None	No IPR available	PANTHER	PTHR33919	OS09G0127700 PROTEIN	coord: 7..167
None	No IPR available	PANTHER	PTHR33919:SF9	RIBOSOME BIOGENESIS NEP1-LIKE PROTEIN	coord: 7..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G01780.1	Clc06G01780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane