Sed0011342 (gene) Chayote v1

Overview


Name	Sed0011342
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box protein GID2-like
Location	LG01: 21592556 .. 21593918 (-)
RNA-Seq Expression	Sed0011342
Synteny	Sed0011342

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGGAACAGTTGGCCAATTTGTAGAAGAAAAAAAAAAGGAAGAAAGAAAAAGGCATTTTAAGCGCATTCAATTCTCAATCTTGTCGTCTTCGTAAGCCTTCAAATCTTATGCTTTTAAGCCTTTCTCTTCGCCCAATTCCAAACCCCATCTTCAATTCTCTCTCCCTTTCTCTGTTCTTCATCATTATTAGCTTTTATCCTCACAATTAAACCTAACCCACAAACCGTTTCTCCCAAATCTCTCTAGAAAAGGGCTTGGAGAGGGAGATCTCAGATTTACAATTTCTGGGTATTTGGAGATGAAGCGGCTTGTTCCCGCCGGCGATGGAGATCGGACGACCAGGAAGAAACTCAGGGCAGAGACGGTTGATTCCCTGAAAACTGGGTTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTGAAACATGTAGATGCAAGGACGCTGGCCATGGCGGGTTGTGTGAACCAGCAATGGCACAAAACGGCCGACGATGAGCGCCTTTGGGAGCTGATCTGCACCAAACACTGGGCCAACACCGGCTACGGCAACAACCAACTCCGATCTGTCGTTTTAGCCCTAGGCGGGTTTCGTCGCCTCCACTCCCTCTTCATCTGGCCTCTCACCAAACCCCAATCCTCCTCCTCCACGTCATCATCGGCATCCTCCTCATCGCCGCCGCTGCCGCCGCCGTCGTCGTCGTCGTCGTCAGCGGCTTGGTCTCCAATCCCGACGATGATTGGGTCGAAGCCGCCGTCGCGGTGGGGGAAGGACGAGGTTCATCTATCGCTGTCGCTTCTGTCGATTCGTTACTACGAGAAGATGAACTTCAACAACAGAGGAAGATGAGTACTCTGGATAGTTATATTGATATTGATATTGATTGCAATTTCGGTTTTAATATGTTTTTGGGTTTTCTTTAATTTATTAGATCTGATTCTGGCGTGTAATTTTCATAAGATATGATATGAATTTCTAACTTGTGTGTGTGATGTTATAGAATGAAAAATGAAATGGGTATGAGCTGAAATGGATGGCCAATAAATGGAGTAGCTGTGATTTGATTAGAGAGATAGACAAATGTAGAAATGGGGGTTTGAGAAATGCCCCCACAAGGTTGAAGACAAATGGGATAAAGACAAAGAGGGGAGTTGTTGGCTTTTAGAAATTGATGAATGCTCTGAGAAAAGGCCAAAGAGTGTACCAAAATGTTTAATGGGGTTTGTAGCTATGTGTTCATTTCTCATAGTTGGCTTCCCTTCCCTCTTTTTATGGAATATTTATATATCATTATTGTTGTTGTCTCTCCATTTCTCATTGACCTCTGAGTTTGTTGTTCCTCTGTTTTTCTTAATTGATG

mRNA sequence

GATGGAACAGTTGGCCAATTTGTAGAAGAAAAAAAAAAGGAAGAAAGAAAAAGGCATTTTAAGCGCATTCAATTCTCAATCTTGTCGTCTTCGTAAGCCTTCAAATCTTATGCTTTTAAGCCTTTCTCTTCGCCCAATTCCAAACCCCATCTTCAATTCTCTCTCCCTTTCTCTGTTCTTCATCATTATTAGCTTTTATCCTCACAATTAAACCTAACCCACAAACCGTTTCTCCCAAATCTCTCTAGAAAAGGGCTTGGAGAGGGAGATCTCAGATTTACAATTTCTGGGTATTTGGAGATGAAGCGGCTTGTTCCCGCCGGCGATGGAGATCGGACGACCAGGAAGAAACTCAGGGCAGAGACGGTTGATTCCCTGAAAACTGGGTTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTGAAACATGTAGATGCAAGGACGCTGGCCATGGCGGGTTGTGTGAACCAGCAATGGCACAAAACGGCCGACGATGAGCGCCTTTGGGAGCTGATCTGCACCAAACACTGGGCCAACACCGGCTACGGCAACAACCAACTCCGATCTGTCGTTTTAGCCCTAGGCGGGTTTCGTCGCCTCCACTCCCTCTTCATCTGGCCTCTCACCAAACCCCAATCCTCCTCCTCCACGTCATCATCGGCATCCTCCTCATCGCCGCCGCTGCCGCCGCCGTCGTCGTCGTCGTCGTCAGCGGCTTGGTCTCCAATCCCGACGATGATTGGGTCGAAGCCGCCGTCGCGGTGGGGGAAGGACGAGGTTCATCTATCGCTGTCGCTTCTGTCGATTCGTTACTACGAGAAGATGAACTTCAACAACAGAGGAAGATGAGTACTCTGGATAGTTATATTGATATTGATATTGATTGCAATTTCGGTTTTAATATGTTTTTGGGTTTTCTTTAATTTATTAGATCTGATTCTGGCGTGTAATTTTCATAAGATATGATATGAATTTCTAACTTGTGTGTGTGATGTTATAGAATGAAAAATGAAATGGGTATGAGCTGAAATGGATGGCCAATAAATGGAGTAGCTGTGATTTGATTAGAGAGATAGACAAATGTAGAAATGGGGGTTTGAGAAATGCCCCCACAAGGTTGAAGACAAATGGGATAAAGACAAAGAGGGGAGTTGTTGGCTTTTAGAAATTGATGAATGCTCTGAGAAAAGGCCAAAGAGTGTACCAAAATGTTTAATGGGGTTTGTAGCTATGTGTTCATTTCTCATAGTTGGCTTCCCTTCCCTCTTTTTATGGAATATTTATATATCATTATTGTTGTTGTCTCTCCATTTCTCATTGACCTCTGAGTTTGTTGTTCCTCTGTTTTTCTTAATTGATG

Coding sequence (CDS)

ATGAAGCGGCTTGTTCCCGCCGGCGATGGAGATCGGACGACCAGGAAGAAACTCAGGGCAGAGACGGTTGATTCCCTGAAAACTGGGTTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTGAAACATGTAGATGCAAGGACGCTGGCCATGGCGGGTTGTGTGAACCAGCAATGGCACAAAACGGCCGACGATGAGCGCCTTTGGGAGCTGATCTGCACCAAACACTGGGCCAACACCGGCTACGGCAACAACCAACTCCGATCTGTCGTTTTAGCCCTAGGCGGGTTTCGTCGCCTCCACTCCCTCTTCATCTGGCCTCTCACCAAACCCCAATCCTCCTCCTCCACGTCATCATCGGCATCCTCCTCATCGCCGCCGCTGCCGCCGCCGTCGTCGTCGTCGTCGTCAGCGGCTTGGTCTCCAATCCCGACGATGATTGGGTCGAAGCCGCCGTCGCGGTGGGGGAAGGACGAGGTTCATCTATCGCTGTCGCTTCTGTCGATTCGTTACTACGAGAAGATGAACTTCAACAACAGAGGAAGATGA

Protein sequence

MKRLVPAGDGDRTTRKKLRAETVDSLKTGFVNLDDNLLFEVLKHVDARTLAMAGCVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYYEKMNFNNRGR

Homology

[Close]

BLAST of Sed0011342 vs. NCBI nr
Match: XP_038900230.1 (F-box protein GID2 [Benincasa hispida])

HSP 1 Score: 287.7 bits (735), Expect = 6.9e-74
Identity = 148/189 (78.31%), Postives = 162/189 (85.71%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD-------SLKTGFVNLDDNLLFEVLKHVDARTLAMA 60
           MKR+VP GDGDR T KK RAET D       S +TGF+NLDDNLLFEV KHVDARTLAMA
Sbjct: 1   MKRVVPDGDGDRKTGKKPRAETQDCAGGGDPSDRTGFMNLDDNLLFEVFKHVDARTLAMA 60

Query: 61  GCVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQ 120
            CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLTKPQ
Sbjct: 61  ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ 120

Query: 121 SSSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYY 180
           SSSS+SS++SS        +SSSSSA+WSP P MIGSKPP+RWGKDEVHLSLSLLSIRYY
Sbjct: 121 SSSSSSSTSSS--------ASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180

Query: 181 EKMNFNNRG 183
           EKMNF+NRG
Sbjct: 181 EKMNFSNRG 181

[Close]

BLAST of Sed0011342 vs. NCBI nr
Match: XP_011654137.1 (F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 5.8e-73
Identity = 150/193 (77.72%), Postives = 163/193 (84.46%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD----------SLKTGFVNLDDNLLFEVLKHVDARTL 60
           MKR+VP G GDR   KK +AET D          S KTGF+NLDDNLLFEV KHVDARTL
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAGCVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLT 120
           AMA CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQSSSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSI 180
           KPQSSSS+SSS+SSSS      +SSSSSA+WSP P MIGSKPP+RWGKDEVHLSLSLLSI
Sbjct: 121 KPQSSSSSSSSSSSSS---SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFNNRGR 184
           RYYEKMNF+NRGR
Sbjct: 181 RYYEKMNFSNRGR 190

[Close]

BLAST of Sed0011342 vs. NCBI nr
Match: XP_023536623.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.8 bits (717), Expect = 8.4e-72
Identity = 147/189 (77.78%), Postives = 161/189 (85.19%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD------SLKTGFVNLDDNLLFEVLKHVDARTLAMAG 60
           MKR+VP G GDR T KK RA + D      S KTGF+NLDDNLLFEV KHVDA TLAMA 
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60

Query: 61  CVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQS 120
           CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLTKPQS
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYYE 180
           SSS+SSS+SSSS      SS+SSS+ WSP P MIGSKPP+RWGKDEVHLSLSLLSIRYYE
Sbjct: 121 SSSSSSSSSSSS---STSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYE 180

Query: 181 KMNFNNRGR 184
           KMNF++RGR
Sbjct: 181 KMNFSSRGR 186

[Close]

BLAST of Sed0011342 vs. NCBI nr
Match: KAG6591404.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.8 bits (717), Expect = 8.4e-72
Identity = 146/189 (77.25%), Postives = 161/189 (85.19%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD------SLKTGFVNLDDNLLFEVLKHVDARTLAMAG 60
           MKR+VP G GDR T KK RA + D      S KTGF+NLDDNLLFEV KHVDA TLAMA 
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60

Query: 61  CVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQS 120
           CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLTKPQS
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYYE 180
           SSS+SSS+SSS+      SS+SSS+ WSP P MIGSKPP+RWGKDEVHLSLSLLSIRYYE
Sbjct: 121 SSSSSSSSSSST-----SSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYE 180

Query: 181 KMNFNNRGR 184
           KMNF++RGR
Sbjct: 181 KMNFSSRGR 184

[Close]

BLAST of Sed0011342 vs. NCBI nr
Match: XP_008452610.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GID2-like [Cucumis melo var. makuwa] >TYK20166.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.4e-71
Identity = 148/192 (77.08%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD---------SLKTGFVNLDDNLLFEVLKHVDARTLA 60
           MKR+V  G GDR   KK +AET D         S KTGF+NLDDNLLFEV KHVDARTLA
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAGCVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTK 120
           MA CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQSSSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIR 180
           PQSSSS+SSS+S SS      +SSSSSA+WSP P MIGSKPP+RWGKDEVHLSLSLLSIR
Sbjct: 121 PQSSSSSSSSSSPSS--TSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFNNRGR 184
           YYEKMNF+NRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of Sed0011342 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.0e-45
Identity = 92/175 (52.57%), Postives = 113/175 (64.57%), Query Frame = 0


Query: 7   AGDGDRTTRKKLRAETVDSLKTGFVNLDDNLLFEVLKHVDARTLAMAGCVNQQWHKTADD 66
           AGD    T KK+++   + +  GF NLD+NL++EVLKHVDA+TLAM+ CV++ WHKTA D
Sbjct: 11  AGDAHNETNKKMKSTEEEEI--GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQD 70

Query: 67  ERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSS 126
           ERLWELICT+HW N G G NQLRSVVLALGGFRRLHSL++WPL+KP              
Sbjct: 71  ERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKP-------------- 130

Query: 127 PPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYYEKMNFNNR 182
                                    P +R+GKDE+ L+LSLLSIRYYEKM+F  R
Sbjct: 131 ------------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Sed0011342 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.0e-25
Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 32  NLDDNLLFEVLKHVDARTLAMAGCVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSV 91
           +L ++L+FEVL+  +ARTLA A CV++ W + A+DERLWE  C + WAN G+   QLR+V
Sbjct: 75  DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAV 134

Query: 92  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPPLPPPSSSSSSAAW--SPIPTMIG 151
           VL+LGGFRRLH+++I PL                               W  + +P   G
Sbjct: 135 VLSLGGFRRLHAVYIRPL------------------------------QWRGAGVPRQQG 192

Query: 152 SK-PPSRWGKDEVHLSLSLLSIRYYEKM 177
            + PP R G+D+V LSLSL SI +++ M
Sbjct: 195 RRQPPVRLGRDQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of Sed0011342 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 40/158 (25.32%), Postives = 69/158 (43.67%), Query Frame = 0


Query: 19  RAETVDSLKTGFVNLDDNLLFEVLKHVDARTLAMAGCVNQQWHKTADDERLWELICTKHW 78
           + + V+ +    +N   ++L E+L+ +D  +L  A CV + W   A ++ +WE +C +  
Sbjct: 16  KRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQV 75

Query: 79  ANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPPLPPPSSSSSS 138
           +     +  LRSVV ALGG+R L+ L I P                              
Sbjct: 76  SPR--PSLSLRSVVSALGGYRCLYFLCIRP------------------------------ 133

Query: 139 AAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYYEKM 177
                   ++   P   W +D++ LSLSL  + YYE++
Sbjct: 136 --------VLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Sed0011342 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.8e-73
Identity = 150/193 (77.72%), Postives = 163/193 (84.46%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD----------SLKTGFVNLDDNLLFEVLKHVDARTL 60
           MKR+VP G GDR   KK +AET D          S KTGF+NLDDNLLFEV KHVDARTL
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAGCVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLT 120
           AMA CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQSSSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSI 180
           KPQSSSS+SSS+SSSS      +SSSSSA+WSP P MIGSKPP+RWGKDEVHLSLSLLSI
Sbjct: 121 KPQSSSSSSSSSSSSS---SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFNNRGR 184
           RYYEKMNF+NRGR
Sbjct: 181 RYYEKMNFSNRGR 190

[Close]

BLAST of Sed0011342 vs. ExPASy TrEMBL
Match: A0A5A7VFE5 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002980 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.0e-72
Identity = 148/192 (77.08%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD---------SLKTGFVNLDDNLLFEVLKHVDARTLA 60
           MKR+V  G GDR   KK +AET D         S KTGF+NLDDNLLFEV KHVDARTLA
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAGCVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTK 120
           MA CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQSSSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIR 180
           PQSSSS+SSS+S SS      +SSSSSA+WSP P MIGSKPP+RWGKDEVHLSLSLLSIR
Sbjct: 121 PQSSSSSSSSSSPSS--TSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFNNRGR 184
           YYEKMNF+NRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of Sed0011342 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.0e-72
Identity = 145/189 (76.72%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD------SLKTGFVNLDDNLLFEVLKHVDARTLAMAG 60
           MKR+VP G GDR T KK RA + D      S KTGF+NLDDNLLFEV KHVDARTLAMA 
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFLNLDDNLLFEVFKHVDARTLAMAA 60

Query: 61  CVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQS 120
           CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLTKPQS
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYYE 180
           SSS+SSS S         SS+SSS+ WSP P MIGSKPP+RWGKDEVHLSLSLLSIRYYE
Sbjct: 121 SSSSSSSTS---------SSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYE 180

Query: 181 KMNFNNRGR 184
           KMNF +RGR
Sbjct: 181 KMNFGSRGR 180

[Close]

BLAST of Sed0011342 vs. ExPASy TrEMBL
Match: A0A1S3BV18 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.0e-72
Identity = 148/192 (77.08%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD---------SLKTGFVNLDDNLLFEVLKHVDARTLA 60
           MKR+V  G GDR   KK +AET D         S KTGF+NLDDNLLFEV KHVDARTLA
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAGCVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTK 120
           MA CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQSSSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIR 180
           PQSSSS+SSS+S SS      +SSSSSA+WSP P MIGSKPP+RWGKDEVHLSLSLLSIR
Sbjct: 121 PQSSSSSSSSSSPSS--TSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFNNRGR 184
           YYEKMNF+NRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of Sed0011342 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.6e-71
Identity = 146/190 (76.84%), Postives = 156/190 (82.11%), Query Frame = 0


Query: 1   MKRLVPAGDGDRTTRKKLRAETVD------SLKTGFVNLDDNLLFEVLKHVDARTLAMAG 60
           MKR+VP G GDR T KK RA + D      S KTGF+NLDDNLLFEV KHVDARTLAMA 
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAA 60

Query: 61  CVNQQWHKTADDERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQ- 120
           CV++QWHKTA+DERLWELICT+HWANTG GN QLRSVVLALGGFRRLHSLFIWPLTKPQ 
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSSTSSSASSSSPPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYY 180
           SSSSTSSSASSSSP             WSP P MIGSKPP+RWGKDEVHLSLSLLSIRYY
Sbjct: 121 SSSSTSSSASSSSP-------------WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 177

Query: 181 EKMNFNNRGR 184
           EKMNF++RGR
Sbjct: 181 EKMNFSSRGR 177

[Close]

BLAST of Sed0011342 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 181.8 bits (460), Expect = 5.0e-46
Identity = 92/175 (52.57%), Postives = 113/175 (64.57%), Query Frame = 0


Query: 7   AGDGDRTTRKKLRAETVDSLKTGFVNLDDNLLFEVLKHVDARTLAMAGCVNQQWHKTADD 66
           AGD    T KK+++   + +  GF NLD+NL++EVLKHVDA+TLAM+ CV++ WHKTA D
Sbjct: 11  AGDAHNETNKKMKSTEEEEI--GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQD 70

Query: 67  ERLWELICTKHWANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSS 126
           ERLWELICT+HW N G G NQLRSVVLALGGFRRLHSL++WPL+KP              
Sbjct: 71  ERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKP-------------- 130

Query: 127 PPLPPPSSSSSSAAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYYEKMNFNNR 182
                                    P +R+GKDE+ L+LSLLSIRYYEKM+F  R
Sbjct: 131 ------------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Sed0011342 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-10
Identity = 40/158 (25.32%), Postives = 69/158 (43.67%), Query Frame = 0


Query: 19  RAETVDSLKTGFVNLDDNLLFEVLKHVDARTLAMAGCVNQQWHKTADDERLWELICTKHW 78
           + + V+ +    +N   ++L E+L+ +D  +L  A CV + W   A ++ +WE +C +  
Sbjct: 16  KRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQV 75

Query: 79  ANTGYGNNQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPPLPPPSSSSSS 138
           +     +  LRSVV ALGG+R L+ L I P                              
Sbjct: 76  SPR--PSLSLRSVVSALGGYRCLYFLCIRP------------------------------ 133

Query: 139 AAWSPIPTMIGSKPPSRWGKDEVHLSLSLLSIRYYEKM 177
                   ++   P   W +D++ LSLSL  + YYE++
Sbjct: 136 --------VLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

The following BLAST results are available for this feature:

BLAST of Sed0011342 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900230.1	6.9e-74	78.31	F-box protein GID2 [Benincasa hispida]	[more]
XP_011654137.1	5.8e-73	77.72	F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230...	[more]
XP_023536623.1	8.4e-72	77.78	F-box protein GID2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591404.1	8.4e-72	77.25	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008452610.1	1.4e-71	77.08	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GI...	[more]

BLAST of Sed0011342 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	7.0e-45	52.57	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	8.0e-25	41.22	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	1.1e-08	25.32	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Sed0011342 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2H5	2.8e-73	77.72	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A5A7VFE5	7.0e-72	77.08	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1ILD7	7.0e-72	76.72	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]
A0A1S3BV18	7.0e-72	77.08	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1	[more]
A0A6J1FA22	2.6e-71	76.84	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]

BLAST of Sed0011342 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	5.0e-46	52.57	F-box family protein	[more]
AT5G48170.1	7.5e-10	25.32	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 16..123 e-value: 7.0E-10 score: 40.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..157
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 7..179
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 32..74 e-value: 2.7E-5 score: 23.9
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 7..179
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 29..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011342.1	Sed0011342.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding