Cla97C02G038030 (gene) Watermelon (97103) v2.5

Overview
NameCla97C02G038030
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionF-box protein
LocationCla97Chr02: 25196469 .. 25198785 (-)
RNA-Seq ExpressionCla97C02G038030
SyntenyCla97C02G038030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAGAATTGAGACTAAAGTGGTGTTTGGGACCCATTTTCACGTAAGTGGAGTGGTTATTAATAGTCTACTTCATGTTTGGAGCTCAAATTATAATAATAGGTGTTTCTATCTATTATAGTCTACAACTACATTATTGATATTTTAAATCTATTTTTATTACCGTGTTTACTATTTATTATGGTATTTATTAATTTCGAAACTAAAATAATTTGCTACCGAAATATGGTCTATGATTGGATGGTCAGGCCGAAGGACCTCGGGAAGTGCTTCGATGGTCCCATCCGAGGTTTGCTGTGTGAGGATGAGAATAGGACTTTTCATTCTTTGAAACTCCTAAAACTAAAAGTAAATCAATTTAATAAGTGGTCTTTCATCAATTTACACTATTTATTACCTTTTATTTAGACAAATATCATGATATTTATAATTTTATCAATTGAATTTTTAAATTTTTATAAGTGAATCAATTTAGACTATCAATTAAGATTTCTTTTGAAAATTGTCCATGCAAATTAATTCTAATCCTCTGTTCTATTAATCCAAAATTTGAAAAAGTTTATACATGTATAAGAATTGGATGCATGAACGATTATCAAATGTAATCTTAATAAAGGGTTTGAATTGATTCATTTATAACGATTTAAAAGCTTAATTAAAACAATTAAGACCCTATTTGGTAACCATTTGGTTCTTTGTTTATTGTTTTTTAAACTTAAGTATATAAACGTTCATTCTACCTCTAAATTACTTGCGTGGTTATCTATTTTTTACCAACATTTTTATAAATTAAGCTAAATTTAGAAACAAAAAATACTTTTTAAAAACATGTTTTTGTTTTCTAAATTTTACTAAGCATTCAACTATTATACTTAAAAAAATGCAAATCATTGTGAGAAATTAAGAAGAAATATACTTAAATTTCAAAATCTAAAAACCAAAAATAAAATGATTACCAAATGGAGCTCTACATATTTCACGTGATTTTTTCAAAACTAAGTTTGAAGGAGGGTGTTAATTGATACTCATACACTTACAAAAATTTAAGGTTTAAATCGATACAACTATCAAAATTTAAAAGTTAAAAAACACTTTTAGTCCCTAAACTTTTATAAAAGTAACGATGTAGTCTCTATACTTTCAATTTTGTAACAAATTAATCCCTAAACTTTATTATGTAATAATATGGTCATTGTACTTGCAAATTTGCAACAATTTAGTCCCTAACGTAAGAAAAAAACCATCAAATTAGATGTTAATTTTTATTAATTTATGATGTAGACTTTATATTATATAAAAATACGAGTCTCTAATTTGTTTATCAGTTTATTATGCAAAACATCTCATCAAAGCACACTAATTTTTATGATAGAGACTGAATTGTTATAAATTTTAAAGTATAAACATTAAATCATTACACATTAAAGTCTAGGAACCAAATCTTTATAAATTTTAAATTACAATGACTAAATTGTTACATAGTAAAATTTATAAATTAAATTGTTACAAAATTAAAAATATATGAACTAAGTCATTATAAACCAAAGTTTAGGAACTATTATTACTACTATAAAAGTTTAGGAACTAAAAGCAATTAACAAGTTAAGGTGTAGGGGTAGATTGAAAATTTTCATAACAAGGGTTTCAAGAAGATTTGAGAAAAATTATTTAAAAGGGTAATAAAGTCTTTTCAATATCCGTAAATTAAAAAGTGGTCCAGAAATGTTAATGGCCTTAAAAATTGCTGTATTGTTAACAATTCCCCGAATATTCATTTTGTAGGATGATTGGTGCCACGTGGCAAATAGAGCTTGCTTTTTGTGCTTCTTTTCTCCGCCCCTTTTGTTACAACACCACAAGCTTCTTCGAATTTGAAATACGAAGTGGAGAGCAGAGGATCGTAACGGATTCGGCTGCTGTGTGGTCGGAGGGGATGGAGGTGGAGCCGGAGATTGATCGCTTGCCGATTGATCTACTGGCTGACATTTTTGCGACGATAACGTACTTCACCGATTTGGCTCAGTAATTGATTCTTGATTAATGTTTTTTCTTCCCCTTCAATTGCTCTGGTTGTTGTTCTTTCTAGGGTTTCTGCGATTGTGGAAAAACGCAGGGTGTGCGGGGTTTGTAAGAAATGGAATGAAGGAGTTAAAATGTCTATTGGTAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGGTTTCTCCACTGCTCGCCTTATTCGCCATGAATACAGCCTTCGAGAGCTCGACATGTAATCTCTAACCATGATTTAAGTGATTCTAACCTGGTTTAAATCATTTTTGTTT

mRNA sequence

ATGTTTAGAATTGAGACTAAAGTGGTGTTTGGGACCCATTTTCACGCCGAAGGACCTCGGGAAGTGCTTCGATGGTCCCATCCGAGGATGATTGGTGCCACGTGGCAAATAGAGCTTGCTTTTTGTGCTTCTTTTCTCCGCCCCTTTTGTTACAACACCACAAGCTTCTTCGAATTTGAAATACGAAGTGGAGAGCAGAGGATCGTAACGGATTCGGCTGCTGTGTGGTCGGAGGGGATGGAGGTGGAGCCGGAGATTGATCGCTTGCCGATTGATCTACTGGCTGACATTTTTGCGACGATAACGGTTTCTGCGATTGTGGAAAAACGCAGGGTGTGCGGGGTTTGTAAGAAATGGAATGAAGGAGTTAAAATGTCTATTGGTAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGGTTTCTCCACTGCTCGCCTTATTCGCCATGAATACAGCCTTCGAGAGCTCGACATGTAATCTCTAACCATGATTTAAGTGATTCTAACCTGGTTTAAATCATTTTTGTTT

Coding sequence (CDS)

ATGTTTAGAATTGAGACTAAAGTGGTGTTTGGGACCCATTTTCACGCCGAAGGACCTCGGGAAGTGCTTCGATGGTCCCATCCGAGGATGATTGGTGCCACGTGGCAAATAGAGCTTGCTTTTTGTGCTTCTTTTCTCCGCCCCTTTTGTTACAACACCACAAGCTTCTTCGAATTTGAAATACGAAGTGGAGAGCAGAGGATCGTAACGGATTCGGCTGCTGTGTGGTCGGAGGGGATGGAGGTGGAGCCGGAGATTGATCGCTTGCCGATTGATCTACTGGCTGACATTTTTGCGACGATAACGGTTTCTGCGATTGTGGAAAAACGCAGGGTGTGCGGGGTTTGTAAGAAATGGAATGAAGGAGTTAAAATGTCTATTGGTAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGGTTTCTCCACTGCTCGCCTTATTCGCCATGAATACAGCCTTCGAGAGCTCGACATGTAA

Protein sequence

MFRIETKVVFGTHFHAEGPREVLRWSHPRMIGATWQIELAFCASFLRPFCYNTTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
Homology
BLAST of Cla97C02G038030 vs. NCBI nr
Match: KAG6571264.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-30
Identity = 70/105 (66.67%), Postives = 84/105 (80.00%), Query Frame = 0

Query: 56  FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGV 115
           FF+ ++R GE R   DSAAVW+ GME EPEIDRLPIDLLA IFA IT  +  +  + CGV
Sbjct: 18  FFQIDVRRGEGRRRMDSAAVWAVGMESEPEIDRLPIDLLAHIFAMIT--SFTDLAQACGV 77

Query: 116 CKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
           C+KW EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Sbjct: 78  CRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDI 120

BLAST of Cla97C02G038030 vs. NCBI nr
Match: KAG7015628.1 (F-box protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-30
Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 0

Query: 51  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEK 110
           Y+T   FF+ ++R GE R   DSAAVW+ GME EPEIDRLPIDLLA IFA IT  +  + 
Sbjct: 3   YDTADFFFQIDMRRGEGRRRMDSAAVWAVGMESEPEIDRLPIDLLAHIFAMIT--SFTDL 62

Query: 111 RRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
            + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Sbjct: 63  AQACGVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDI 111

BLAST of Cla97C02G038030 vs. NCBI nr
Match: XP_022927966.1 (F-box protein At5g67140-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 142.5 bits (358), Expect = 3.1e-30
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 0

Query: 51  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEK 110
           Y+T   FF+ ++R GE R   DSAAVW+ GM+ EPEIDRLPIDLLA IFA IT  +  + 
Sbjct: 3   YDTADFFFQIDMRRGEGRRRMDSAAVWAVGMDFEPEIDRLPIDLLAHIFAMIT--SFTDL 62

Query: 111 RRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
            + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Sbjct: 63  AQACGVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDI 111

BLAST of Cla97C02G038030 vs. NCBI nr
Match: XP_022985881.1 (F-box protein At5g67140-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 138.7 bits (348), Expect = 4.5e-29
Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 53  TTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRV 112
           T  FF+ ++R GE R   DSA VW+ GME EPEIDRLPIDLLA IFA IT  +  +  + 
Sbjct: 6   TDFFFQIDMRRGEGRRRMDSADVWAVGMEFEPEIDRLPIDLLAHIFAMIT--SFTDLAQA 65

Query: 113 CGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
           CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLI H YSLR+LD+
Sbjct: 66  CGVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLICHAYSLRDLDI 111

BLAST of Cla97C02G038030 vs. NCBI nr
Match: XP_023512668.1 (F-box protein At5g67140-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512669.1 F-box protein At5g67140-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 5.9e-29
Identity = 69/111 (62.16%), Postives = 85/111 (76.58%), Query Frame = 0

Query: 51  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEK 110
           Y+T   FF+  +R GE R   DSAAVW+ GM+ +PEIDRLPIDLLA IFA IT  +  + 
Sbjct: 3   YDTADFFFQIHMRRGEGRRRMDSAAVWAVGMDFDPEIDRLPIDLLAHIFAMIT--SFTDL 62

Query: 111 RRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
            + C VC+KW EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Sbjct: 63  AQACAVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDI 111

BLAST of Cla97C02G038030 vs. ExPASy Swiss-Prot
Match: Q9FH99 (F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 80  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWK 139
           M+ E  IDRLP+DLLA IF+  T   ++   +  GVCKKW + V  S+ RR++LSFAGWK
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVL--AQASGVCKKWRKAVNQSMARRETLSFAGWK 60

Query: 140 MDGFSTARLIRHEYSLRELDM 161
           MD  ST+RL+   ++L+ELD+
Sbjct: 61  MDDDSTSRLVHLAFNLKELDI 79

BLAST of Cla97C02G038030 vs. ExPASy TrEMBL
Match: A0A6J1EIZ0 (F-box protein At5g67140-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434817 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 0

Query: 51  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEK 110
           Y+T   FF+ ++R GE R   DSAAVW+ GM+ EPEIDRLPIDLLA IFA IT  +  + 
Sbjct: 3   YDTADFFFQIDMRRGEGRRRMDSAAVWAVGMDFEPEIDRLPIDLLAHIFAMIT--SFTDL 62

Query: 111 RRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
            + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Sbjct: 63  AQACGVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDI 111

BLAST of Cla97C02G038030 vs. ExPASy TrEMBL
Match: A0A6J1J9G2 (F-box protein At5g67140-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483796 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-29
Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 53  TTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRV 112
           T  FF+ ++R GE R   DSA VW+ GME EPEIDRLPIDLLA IFA IT  +  +  + 
Sbjct: 6   TDFFFQIDMRRGEGRRRMDSADVWAVGMEFEPEIDRLPIDLLAHIFAMIT--SFTDLAQA 65

Query: 113 CGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
           CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLI H YSLR+LD+
Sbjct: 66  CGVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLICHAYSLRDLDI 111

BLAST of Cla97C02G038030 vs. ExPASy TrEMBL
Match: A0A6J1EIM3 (F-box protein At5g67140-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434817 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0

Query: 61  IRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWN 120
           +R GE R   DSAAVW+ GM+ EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW 
Sbjct: 1   MRRGEGRRRMDSAAVWAVGMDFEPEIDRLPIDLLAHIFAMIT--SFTDLAQACGVCRKWK 60

Query: 121 EGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
           EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Sbjct: 61  EGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDI 98

BLAST of Cla97C02G038030 vs. ExPASy TrEMBL
Match: A0A0A0LPU5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 7.0e-28
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 0

Query: 71  DSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRR 130
           DSA VWS  ME+EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GRR
Sbjct: 5   DSAVVWSVEMELEPEIDRLPIDLLAHIFAMIT--SFTDLAQACGVCRKWKEGVKLSLGRR 64

Query: 131 KSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
           KSLSFAGWKMD  STARLIRH YSLRELD+
Sbjct: 65  KSLSFAGWKMDDNSTARLIRHAYSLRELDI 92

BLAST of Cla97C02G038030 vs. ExPASy TrEMBL
Match: A0A6J1J645 (F-box protein At5g67140-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483796 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 0

Query: 61  IRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWN 120
           +R GE R   DSA VW+ GME EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW 
Sbjct: 1   MRRGEGRRRMDSADVWAVGMEFEPEIDRLPIDLLAHIFAMIT--SFTDLAQACGVCRKWK 60

Query: 121 EGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 161
           EGVK+S+GR++SLSFAGWKMD  STARLI H YSLR+LD+
Sbjct: 61  EGVKLSLGRKESLSFAGWKMDDDSTARLICHAYSLRDLDI 98

BLAST of Cla97C02G038030 vs. TAIR 10
Match: AT5G67140.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-16
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 80  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWK 139
           M+ E  IDRLP+DLLA IF+  T   ++   +  GVCKKW + V  S+ RR++LSFAGWK
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVL--AQASGVCKKWRKAVNQSMARRETLSFAGWK 60

Query: 140 MDGFSTARLIRHEYSLRELDM 161
           MD  ST+RL+   ++L+ELD+
Sbjct: 61  MDDDSTSRLVHLAFNLKELDI 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571264.11.4e-3066.67F-box protein, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7015628.11.8e-3064.86F-box protein [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022927966.13.1e-3063.96F-box protein At5g67140-like isoform X1 [Cucurbita moschata][more]
XP_022985881.14.5e-2963.89F-box protein At5g67140-like isoform X1 [Cucurbita maxima][more]
XP_023512668.15.9e-2962.16F-box protein At5g67140-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235126... [more]
Match NameE-valueIdentityDescription
Q9FH993.0e-1550.62F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1EIZ01.5e-3063.96F-box protein At5g67140-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1J9G22.2e-2963.89F-box protein At5g67140-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483... [more]
A0A6J1EIM31.1e-2867.00F-box protein At5g67140-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A0A0LPU57.0e-2873.33F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 ... [more]
A0A6J1J6452.1e-2766.00F-box protein At5g67140-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483... [more]
Match NameE-valueIdentityDescription
AT5G67140.12.1e-1650.62F-box/RNI-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G038030.2Cla97C02G038030.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component GO:0019005 SCF ubiquitin ligase complex