Cla97C11G216266.1 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C11G216266.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon opus
Location	Cla97Chr11: 16563893 .. 16564350 (+)
Sequence length	339
RNA-Seq Expression	Cla97C11G216266.1
Synteny	Cla97C11G216266.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTGTCTATATTCAAGAAGTTGGGTGTAGGGGAAGCACGGCCCACCACAGTCACACTTCAGCTCGCTGACCGCTCCATTAAGCATCCCGAAGGAAAAATTGAGGATGTTCATGTGAAGGTACACAAATTCATCTTCCCACCCGACTTCATAATTCTGGATTATGAAGGTGACAGAGAGGTGCCCATCATCCTGGGAAGACCTCTTTTAGCTACTGATGCGCCCTGATTGACGTCTAGGAAGGGGAATTAACAATTCGTGTGGACGACCAGCAGGTAAAGTTTAATGTTTTTAATGCATTGAAATATCCTGATGATTTTCATTCTTGCCAGATGATCGAAGATATAATTGAAGAAAAGGCAAGCATCATAGATGCACGGGCAGAAGACGAAACAATGCTGGATGACATGGATGAGGGAAGAGAAGCGGAAATAGGTGTTGATGCGCACTTTTAG

mRNA sequence

ATGCCACTGTCTATATTCAAGAAGTTGGGTGTAGGGGAAGCACGGCCCACCACAGTCACACTTCAGCTCGCTGACCGCTCCATTAAGCATCCCGAAGGAAAAATTGAGGATGTTCATGTGAAGGAAGGGGAATTAACAATTCGTGTGGACGACCAGCAGGTAAAGTTTAATGTTTTTAATGCATTGAAATATCCTGATGATTTTCATTCTTGCCAGATGATCGAAGATATAATTGAAGAAAAGGCAAGCATCATAGATGCACGGGCAGAAGACGAAACAATGCTGGATGACATGGATGAGGGAAGAGAAGCGGAAATAGGTGTTGATGCGCACTTTTAG

Coding sequence (CDS)

ATGCCACTGTCTATATTCAAGAAGTTGGGTGTAGGGGAAGCACGGCCCACCACAGTCACACTTCAGCTCGCTGACCGCTCCATTAAGCATCCCGAAGGAAAAATTGAGGATGTTCATGTGAAGGAAGGGGAATTAACAATTCGTGTGGACGACCAGCAGGTAAAGTTTAATGTTTTTAATGCATTGAAATATCCTGATGATTTTCATTCTTGCCAGATGATCGAAGATATAATTGAAGAAAAGGCAAGCATCATAGATGCACGGGCAGAAGACGAAACAATGCTGGATGACATGGATGAGGGAAGAGAAGCGGAAATAGGTGTTGATGCGCACTTTTAG

Protein sequence

MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIEDVHVKEGELTIRVDDQQVKFNVFNALKYPDDFHSCQMIEDIIEEKASIIDARAEDETMLDDMDEGREAEIGVDAHF

Homology

[Close]

BLAST of Cla97C11G216266.1 vs. NCBI nr
Match: XP_038891032.1 (uncharacterized protein LOC120080447 [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-25
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIEDV------HVKEGELTIRVDDQQV 60
           MPLSIFKKL +  ARPTT+TLQLADRSI HPEGKIEDV       V++GELTIRVDDQQV
Sbjct: 73  MPLSIFKKLDIDNARPTTITLQLADRSIMHPEGKIEDVLVRVLIDVQKGELTIRVDDQQV 132

Query: 61  KFNVFNALKYPDDFHSCQMIEDIIEEK-ASIIDARAEDETMLDDMDEGREAEIGVDAHF 113
           KFNV NALKYP D  +CQ IE++ EE     ++   E++  +D M E   A I V+++F
Sbjct: 133 KFNVLNALKYPSDMENCQCIEELREEPWHEPLEELEEEDFGIDAMWEENCAAIQVESNF 191

[Close]

BLAST of Cla97C11G216266.1 vs. NCBI nr
Match: XP_038895928.1 (uncharacterized protein LOC120084099 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 64/132 (48.48%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 1   MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIEDVH--------------------- 60
           MPLSIF+KLG+GEARPTTVTLQLADRSI H EGKIEDV                      
Sbjct: 73  MPLSIFRKLGIGEARPTTVTLQLADRSITHSEGKIEDVRVQVDKFIFPAYFIILDNEAEI 132

Query: 61  -------------------VKEGELTIRVDDQQVKFNVFNALKYPDDFHSCQMIEDIIEE 93
                              V++GELTI+VDDQ+VKFN+FNA  Y DD  +CQ ++D+I E
Sbjct: 133 DVPIILGRPFFSIGGALIDVQKGELTIQVDDQKVKFNIFNASNYHDDMKTCQYMDDLIIE 192

[Close]

BLAST of Cla97C11G216266.1 vs. NCBI nr
Match: XP_038899815.1 (uncharacterized protein LOC120087043 [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-20
Identity = 60/120 (50.00%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 1   MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIEDV---------------------- 60
           MPLSIFKKL +G ARPTT+TLQLADRSI HPEGKIEDV                      
Sbjct: 280 MPLSIFKKLNIGNARPTTITLQLADRSITHPEGKIEDVLMQVDKFIFPTDFIILDYEADI 339

Query: 61  ------------------HVKEGELTIRVDDQQVKFNVFNALKYPDDFHSCQMIEDIIEE 81
                             +V++GELTI+V+DQQVKFNV NALKYP D  +CQ +E++ EE
Sbjct: 340 EVPIILGRPFLVTGRALINVQKGELTIKVNDQQVKFNVLNALKYPSDMETCQYVEELQEE 399

[Close]

BLAST of Cla97C11G216266.1 vs. NCBI nr
Match: XP_038888126.1 (uncharacterized protein LOC120078022 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 4.6e-20
Identity = 58/113 (51.33%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 1   MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIEDVHVKEGELTIRVDDQQVKFNVFN 60
           MP+SIFKKL +  ARPTT+TLQ+ADRSI +PEG+   + V++ ELTIRVDDQQVKFNV +
Sbjct: 260 MPVSIFKKLNISNARPTTITLQMADRSITYPEGRAL-IDVQKEELTIRVDDQQVKFNVLS 319

Query: 61  ALKYPDDFHSCQMIEDIIEEK-ASIIDARAEDETMLDDMDEGREAEIGVDAHF 113
           ALKYP D  +CQ +E+++EE     ++   E++  +  M E   A I V+++F
Sbjct: 320 ALKYPSDMENCQYVEELLEEPWHKPLEELEEEDYGIGAMREEDCATIKVESNF 371

[Close]

BLAST of Cla97C11G216266.1 vs. NCBI nr
Match: XP_038896647.1 (uncharacterized protein LOC120084908 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-19
Identity = 60/117 (51.28%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 1   MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIEDVHVK------------------- 60
           MPL IFKKLG+GEA+PTT+TLQLADRSI +PEGKIEDV VK                   
Sbjct: 32  MPLLIFKKLGIGEAKPTTITLQLADRSITYPEGKIEDVFVKVDEFIFFTDFIILNYEADI 91

Query: 61  ---------------------EGELTIRVDDQQVKFNVFNALKYPDDFHSCQMIEDI 78
                                +GELTIRVDDQQVKFNVFNALK+ ++  +CQ IED+
Sbjct: 92  EIPIILGRPFLSIGRALIDMQKGELTIRVDDQQVKFNVFNALKFINELETCQHIEDL 148

[Close]

BLAST of Cla97C11G216266.1 vs. ExPASy TrEMBL
Match: A0A5B6V914 (Uncharacterized protein OS=Gossypium australe OX=47621 GN=EPI10_000823 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.3e-16
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 8   KLGVGEARPTTVTLQLADRSIKHPEGKIEDVHVKEGELTIRVDDQQVKFNVFNALKYPDD 67
           KLG+G+ARP TVTLQL DRS  HPEGKIEDV  ++GELTIRV+DQ + FNVF+ALKY  D
Sbjct: 265 KLGIGKARPITVTLQLVDRSYAHPEGKIEDVLERKGELTIRVNDQHITFNVFDALKYAAD 324

Query: 68  FHSCQ---MIEDIIEEK 82
              C    +IE  IE K
Sbjct: 325 NKECHAIVLIEITIEAK 341

[Close]

BLAST of Cla97C11G216266.1 vs. ExPASy TrEMBL
Match: A0A6P4N1Y6 (uncharacterized protein LOC108465977 OS=Gossypium arboreum OX=29729 GN=LOC108465977 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 1   MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIEDVHVKEGELTIRVDDQQVKFNVFN 60
           MP+SI +KLG+G+ RPTTVTLQ+ DRS  HP+GKIED  V +GELT+RV+D+QV FNVFN
Sbjct: 41  MPMSIPRKLGIGKVRPTTVTLQVVDRSYAHPKGKIED--VLKGELTMRVNDKQVNFNVFN 100

Query: 61  ALKYPDDFHSCQ---MIEDIIEEKASIIDARAEDETMLDDMDEG 102
            LK  D+   C    +IE  ++E        ++ E   D M++G
Sbjct: 101 VLKCTDENEECHTIGLIEAAVDEFTKFCYDNSDSEN--DLMEQG 140

[Close]

BLAST of Cla97C11G216266.1 vs. ExPASy TrEMBL
Match: A0A6J1CR66 (uncharacterized protein LOC111013431 OS=Momordica charantia OX=3673 GN=LOC111013431 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 49/118 (41.53%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 1   MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIED-----------VHVKEGELTIRV 60
           MPLS+ K+LG+GE RPT VTLQLADRSI +PE KIED           V V +GE+T+RV
Sbjct: 32  MPLSVIKRLGMGEVRPTIVTLQLADRSIANPEEKIEDVLAFLSTRRPLVDVHQGEVTMRV 91

Query: 61  DDQQVKFNVFNALKYPDDFHSCQMIEDIIEEKASIIDARA-------EDETMLDDMDE 101
            DQ++KF++++++KYP D   C  +  + E   +++           E  +M++  DE
Sbjct: 92  QDQEIKFSIYDSMKYPSDAEECAFLRVLDEAVMAMLSVEVMLEHQNNELNSMMEQADE 149

[Close]

BLAST of Cla97C11G216266.1 vs. ExPASy TrEMBL
Match: A0A1U8KID3 (uncharacterized protein LOC107917468 OS=Gossypium hirsutum OX=3635 GN=LOC107917468 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 1   MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIEDV----------HVKEGELTIRVD 60
           MP+S+F+ LG+ +ARPTTVTLQLA RS  HPE KIEDV           V++GELTIRV+
Sbjct: 11  MPMSVFRNLGIEKARPTTVTLQLAGRSYAHPEVKIEDVPFLAASRTLNEVQKGELTIRVN 70

Query: 61  DQQVKFNVFNALKYPDDFHSC---QMIEDIIEEK-ASIIDARAEDETMLDDMDEGREAE 106
           DQQ+ FN+F+ LK  ++   C     IE ++EE+ AS     ++ +T   ++DE +  E
Sbjct: 71  DQQITFNIFDTLKCANENEECLAIGSIEIVVEEEFASFCHNNSDSDTDSLELDETKTFE 129

[Close]

BLAST of Cla97C11G216266.1 vs. ExPASy TrEMBL
Match: A0A1U8HW62 (uncharacterized protein LOC107887871 OS=Gossypium hirsutum OX=3635 GN=LOC107887871 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.3e-15
Identity = 62/161 (38.51%), Postives = 86/161 (53.42%), Query Frame = 0


Query: 1   MPLSIFKKLGVGEARPTTVTLQLADRSIKHPEGKIEDV---------------------- 60
           MP+SIFKKLG+G+ RPTTVTLQL DRS  HPEGKIEDV                      
Sbjct: 73  MPMSIFKKLGIGKGRPTTVTLQLVDRSYAHPEGKIEDVLVRVDKFIFPVNFLILECEADH 132

Query: 61  ------------------HVKEGELTIRVDDQQVKFNVFNALKYPDD---FHSCQMIEDI 110
                              V++G+LTIRV+DQ+V FNVFNALK  D+    H+  +I+ +
Sbjct: 133 DVLIILGRLFLTTGRTLIDVQKGKLTIRVNDQKVTFNVFNALKCVDENEKCHTIDLIKAL 192

The following BLAST results are available for this feature:

BLAST of Cla97C11G216266.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891032.1	4.7e-25	58.82	uncharacterized protein LOC120080447 [Benincasa hispida]	[more]
XP_038895928.1	1.2e-20	48.48	uncharacterized protein LOC120084099 [Benincasa hispida]	[more]
XP_038899815.1	2.1e-20	50.00	uncharacterized protein LOC120087043 [Benincasa hispida]	[more]
XP_038888126.1	4.6e-20	51.33	uncharacterized protein LOC120078022 [Benincasa hispida]	[more]
XP_038896647.1	1.7e-19	51.28	uncharacterized protein LOC120084908 [Benincasa hispida]	[more]

BLAST of Cla97C11G216266.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C11G216266.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5B6V914	4.3e-16	63.64	Uncharacterized protein OS=Gossypium australe OX=47621 GN=EPI10_000823 PE=4 SV=1	[more]
A0A6P4N1Y6	1.3e-15	50.00	uncharacterized protein LOC108465977 OS=Gossypium arboreum OX=29729 GN=LOC108465...	[more]
A0A6J1CR66	2.1e-15	41.53	uncharacterized protein LOC111013431 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A1U8KID3	3.7e-15	45.38	uncharacterized protein LOC107917468 OS=Gossypium hirsutum OX=3635 GN=LOC1079174...	[more]
A0A1U8HW62	6.3e-15	38.51	uncharacterized protein LOC107887871 OS=Gossypium hirsutum OX=3635 GN=LOC1078878...	[more]

BLAST of Cla97C11G216266.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33067:SF23	SUBFAMILY NOT NAMED	coord: 1..47
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 1..47

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C11G216266	Cla97C11G216266	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G216266.1-exon	Cla97C11G216266.1-exon-Cla97Chr11:16563893..16564015	exon
Cla97C11G216266.1-exon	Cla97C11G216266.1-exon-Cla97Chr11:16564135..16564350	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G216266.1-cds	Cla97C11G216266.1-cds-Cla97Chr11:16563893..16564015	CDS
Cla97C11G216266.1-cds	Cla97C11G216266.1-cds-Cla97Chr11:16564135..16564350	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C11G216266.1	Cla97C11G216266.1-protein	polypeptide