Sed0023816 (gene) Chayote v1

Overview


Name	Sed0023816
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Glycine cleavage system H protein
Location	LG01: 14816714 .. 14819662 (+)
RNA-Seq Expression	Sed0023816
Synteny	Sed0023816

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAGATTAATGCTTATCATCTCACATCCAGAAAATAGAATTAAATCAACCCAAAATACCTAAAATGAAAAAGAAAAATAATAATAAAAAATAAATGAAAATTGTATTGTATTGTATACGAGCATGTCCACCAACCCTACTGTGCTGTGATACTGATCCCAGATAGCAATAAAGTCCCGTCCATGAAACTCCATTAGCAGCAAAACAAGCTTCTGTTCAGAAGACAAAAAGGGGTTGTTCTTACAGAGCGCTCAAAGCTTCTCATCAATGGCGTCGAGGCTGCTTTGGGCTTCAAGAGCTGCTTCCTACCTCAAGATCTCTGTACCCTTTAGAGGGTTTGCTTCTGGTAAGGCCAACCGACATTTTTCTATACTGATTTTTTTTTTGTCAGTTTTTCTCTGTTCTTATTGATCTTGTTTTTTTGGTGGGTGATCACTGTTCGATCTGCTTTTGACATTGAATCATCTGGGTTTTGTTTGTTTTTGCTGTTTGGTTGATCAATGGCGAACCCTTTTTCGAGATTTTGCAGGATTTGTCTCATTTTTGTATTGTTGTCACGTCTTGTTGTCTTTGTGAATTGTTGCTGCGATTTTATAATGAGTATTTGTGGGTAGATCTTGGGAAGATGGATAAATGGGTTTTCTAAAAATGGAAGAAAAATAATGTTTTTTTTTAATATCCGTGACTGTCTGGGCAGCTTGTGCGCAACTCGACTAATGTAATGGAAAAAACAACCGATGTGATGACCGTCTAGACCAGCTTGTGCGCACCTCGACTAATGTATTAGGAAAAACAATGAATTCTGAATTCTGAATCACGATGTGGTGAATCTCAAACACGAGATCTTCTTTTCTAAGTGACGCTCCCTTTTTTGTGTTCTTATTTGAATCTTGTCATTTAAAGACTCTAGTGCCTTGTTGATCTTTCTTGCTGCTGTATCGTTAATATTAATTGTTGTTCTCTAACTTTGATATTAATCATCTTACCTGAATTTGTTAATGGATTAAAATCCTTGCTCTTTAGTTCCTAAAGAACATGAAAATCAAAGTATGCTCCCCTTGGATATCCCTGATTGGAAAACTACAAATGAGCTTAATTGTAAAATCATTCATTGTCTGTCGAGTTCGGGCCTCCGGACTCGGGTGTCCTCAGGTATTGAGGTATATAGTGGGACGAAGCTCTGATTCTATCAAAAAAAGAAAAAAAAAAAAACTCGTGATATTTGCGTCTAATCCATATGAGACAGCTAAGGAAGCCACTTTGTACTTTTGTATAGAGGCTTATGAAAAGGTAAACATGTATCTCAATGGTTCAATGTGTTAGAAGCCAAGAAATTGAGAATAAAATGTTTCATGTAGTCATATGCTTAAAAAAGGAAGTTCAATGTTTCCTTTCAATGTCGTTTATTTCTCTTTATCTCAAAAAAATTATGGAATAGTTAATACTCAAGTTCATGTTTAAAACTAAACGAGTATAGTGAAATAACTTATATCTCCAATTGTTCAGCTCTGAAGGACTTGAAGTATGCCAGCTCTCATGAATGGGTGAAAGTAGAAGGGGATAAGGCAACTGTTGGCATAACTGATCATGCTCAAGATCATTTGGGTGATGTTGTGTATGTTGAATTACCAGAAGTTGGAACCTCTGTTAAACAGGATGGCAGCTTCGGTGCGGTAGAGAGTGTTAAAGCTACTAGTGATATTAACTCTCCCGTGTCGGGTAAAATCATTGAGGTGAATGAAGAGCTCAACAGCTCTCCTGGTCTGGTAGGTTCCTTAATCTAAATATTCTTGCTCTTAATAATGATTTAGCAATGCTCTGGAGATATTTAAGCGTATTTTTGTGTTCCTTCCTTCATCTTTTGTATGGTTTAAGGTATGTTTCTGTTTAACTAATGTTTTAAGTCTCAATTTCATTAATTTGTATGTCAATCTTGGTGATATTAAGAGGGAGCAATAGTAGCAAGCTCATACTACTGGCCCAAATATTACCCATTTACCCCCACCCCAACAAAGTTCTGGCTGATGTAAGTTTGTAAAGGTTAACGATCTGTTGTACATTGAGTTAGGGGGTTAGACCACCTGTCTCGTAAGAATAATCGAGCTGCGTGTAAATTGGTCTGAACACTCACGGATAAAAAAAAAAGATTATACAGCCTTCTTTTGCTACATGCATGAAATGCATAACATTTACTGTTTCTTTGCATCTTCCTGGTTTGAGCCAATGTCTCCCTTTGGATATCTACAACTGAAAATTTTTGCAGTTATCCTTTATTCCTTATTCTTTATCCTTTCAGTCATATCAATGAAAGTTAAGCAAAATTCCATTCCTTATACAAATCTAACGTGATAGCATCTTTATAACTTCCTTTTTGAAGATTTTTCGTCACAGAATCTAAGCTTTTAAAAGAACCATCACTTTGTTGTCTCTCTTCCAAACATGGTTATACTTGTTTATGATCCATTTGTGTGAATGTAGGTGAACTCAAGTCCATATGAAAATGGATGGATAATTAAGGTGGAGGTTAGTGACAGTGGTGAACTGAAAAACTTGATGGACTCAGAGCAGTACTCCAAGTTCTGTGAAGAAGAAGATTCAAAGCACTGAGAGTTTGATAAGAGAGATGTTTGAAGAAGGCAGCACCTGGGAGAACTCTTGCATCATTATCAGTTGCTTCTCTAAGAGACTGCACATTTCTTCATCTGTTTTTCTTTCTTTTTTTTTGTGTTTTCTGGAATTTATTTCCTTTGTTAGACTCTCAAAATTGCTGGAAGTTTTCCATTTAGATGAATAATTTGATCACTTTGAATCTGCAATGAATGTTATGTTGTGAAGAAGCCAAGGAAAGAGGGGGACCTTAATTTCAGAGCTACTCATTGCATTCTATACATTTTTTTCCTTCCTGTGCTTTTGAAGAAACAAAAATGTGCTTTGAGAATGAAAGATTAC

mRNA sequence

CTCAGATTAATGCTTATCATCTCACATCCAGAAAATAGAATTAAATCAACCCAAAATACCTAAAATGAAAAAGAAAAATAATAATAAAAAATAAATGAAAATTGTATTGTATTGTATACGAGCATGTCCACCAACCCTACTGTGCTGTGATACTGATCCCAGATAGCAATAAAGTCCCGTCCATGAAACTCCATTAGCAGCAAAACAAGCTTCTGTTCAGAAGACAAAAAGGGGTTGTTCTTACAGAGCGCTCAAAGCTTCTCATCAATGGCGTCGAGGCTGCTTTGGGCTTCAAGAGCTGCTTCCTACCTCAAGATCTCTGTACCCTTTAGAGGGTTTGCTTCTGCTCTGAAGGACTTGAAGTATGCCAGCTCTCATGAATGGGTGAAAGTAGAAGGGGATAAGGCAACTGTTGGCATAACTGATCATGCTCAAGATCATTTGGGTGATGTTGTGTATGTTGAATTACCAGAAGTTGGAACCTCTGTTAAACAGGATGGCAGCTTCGGTGCGGTAGAGAGTGTTAAAGCTACTAGTGATATTAACTCTCCCGTGTCGGGTAAAATCATTGAGGTGAATGAAGAGCTCAACAGCTCTCCTGGTCTGGTGAACTCAAGTCCATATGAAAATGGATGGATAATTAAGGTGGAGGTTAGTGACAGTGGTGAACTGAAAAACTTGATGGACTCAGAGCAGTACTCCAAGTTCTGTGAAGAAGAAGATTCAAAGCACTGAGAGTTTGATAAGAGAGATGTTTGAAGAAGGCAGCACCTGGGAGAACTCTTGCATCATTATCAGTTGCTTCTCTAAGAGACTGCACATTTCTTCATCTGTTTTTCTTTCTTTTTTTTTGTGTTTTCTGGAATTTATTTCCTTTGTTAGACTCTCAAAATTGCTGGAAGTTTTCCATTTAGATGAATAATTTGATCACTTTGAATCTGCAATGAATGTTATGTTGTGAAGAAGCCAAGGAAAGAGGGGGACCTTAATTTCAGAGCTACTCATTGCATTCTATACATTTTTTTCCTTCCTGTGCTTTTGAAGAAACAAAAATGTGCTTTGAGAATGAAAGATTAC

Coding sequence (CDS)

ATGGCGTCGAGGCTGCTTTGGGCTTCAAGAGCTGCTTCCTACCTCAAGATCTCTGTACCCTTTAGAGGGTTTGCTTCTGCTCTGAAGGACTTGAAGTATGCCAGCTCTCATGAATGGGTGAAAGTAGAAGGGGATAAGGCAACTGTTGGCATAACTGATCATGCTCAAGATCATTTGGGTGATGTTGTGTATGTTGAATTACCAGAAGTTGGAACCTCTGTTAAACAGGATGGCAGCTTCGGTGCGGTAGAGAGTGTTAAAGCTACTAGTGATATTAACTCTCCCGTGTCGGGTAAAATCATTGAGGTGAATGAAGAGCTCAACAGCTCTCCTGGTCTGGTGAACTCAAGTCCATATGAAAATGGATGGATAATTAAGGTGGAGGTTAGTGACAGTGGTGAACTGAAAAACTTGATGGACTCAGAGCAGTACTCCAAGTTCTGTGAAGAAGAAGATTCAAAGCACTGA

Protein sequence

MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYENGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH

Homology

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BLAST of Sed0023816 vs. NCBI nr
Match: XP_008459025.1 (PREDICTED: glycine cleavage system H protein 2, mitochondrial [Cucumis melo] >KAA0043183.1 glycine cleavage system H protein 2 [Cucumis melo var. makuwa] >TYK12282.1 glycine cleavage system H protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 297.0 bits (759), Expect = 9.6e-77
Identity = 148/155 (95.48%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRL+WASRAASYL+IS+PFRGFAS +KDLKYA+SHEWVKVEGDKATVGITDHAQDHLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEEL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 155

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BLAST of Sed0023816 vs. NCBI nr
Match: XP_038893845.1 (glycine cleavage system H protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 295.8 bits (756), Expect = 2.1e-76
Identity = 147/155 (94.84%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRL+WASRAASYL+IS+P+RGFAS +KDLKYA+SHEWVKVEGDKATVGITDHAQDHLG
Sbjct: 1   MASRLVWASRAASYLRISIPYRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEEL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 155

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BLAST of Sed0023816 vs. NCBI nr
Match: XP_004145438.1 (glycine cleavage system H protein 2, mitochondrial [Cucumis sativus] >KGN66866.1 hypothetical protein Csa_007471 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 3.1e-75
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRL+WASRAASYL+IS+PFRGFAS +KDLKYA+SHEWVKVEGDKATVGITDHAQ HLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQGHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEEL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVSDSGELK LMDSEQYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKKLMDSEQYSKFCEEEDSKH 155

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BLAST of Sed0023816 vs. NCBI nr
Match: XP_022927059.1 (glycine cleavage system H protein 2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 288.9 bits (738), Expect = 2.6e-74
Identity = 141/155 (90.97%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRLLWASRAAS+L+IS+P+RGFAS +KDLKYA+SHEWVKVEGDKAT+GITDHAQDHLG
Sbjct: 1   MASRLLWASRAASFLRISIPYRGFASVVKDLKYATSHEWVKVEGDKATIGITDHAQDHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPE+G SVKQDGSFGAVESVKATSDINSPVSGKI+EVN+EL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEIGASVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVSDS ELKNLMDSEQYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDSKH 155

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BLAST of Sed0023816 vs. NCBI nr
Match: XP_023520355.1 (glycine cleavage system H protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.1 bits (736), Expect = 4.5e-74
Identity = 142/155 (91.61%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRLLWASRAAS+L+IS P+RGFAS +KDLKYA+SHEWVKVEGDKAT+GITDHAQDHLG
Sbjct: 1   MASRLLWASRAASFLRISTPYRGFASVVKDLKYATSHEWVKVEGDKATIGITDHAQDHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPEVG SVKQDGSFGAVESVKATSDINSPVSGKI+EVN+EL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGASVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVSDS ELKNLMDSEQYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDSKH 155

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BLAST of Sed0023816 vs. ExPASy Swiss-Prot
Match: O82179 (Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDH2 PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.6e-64
Identity = 123/156 (78.85%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFAS-ALKDLKYASSHEWVKVEGDKATVGITDHAQDHL 60
           MA RL WASR AS+L+ISV  RGF+S  LKDLKYA SHEWVK++G+KAT GITDHAQDHL
Sbjct: 1   MACRLFWASRVASHLRISVAQRGFSSVVLKDLKYADSHEWVKIDGNKATFGITDHAQDHL 60

Query: 61  GDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPY 120
           GDVVYVELP+VG SV Q  SFGAVESVKATSDINSPVSGK++EVNEEL  SPGLVNSSPY
Sbjct: 61  GDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVNSSPY 120

Query: 121 ENGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           E GWIIKVE+SD+GE + LMDS++YSKFCEEED+KH
Sbjct: 121 EQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDAKH 156

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BLAST of Sed0023816 vs. ExPASy Swiss-Prot
Match: P49359 (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei OX=4226 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.7e-48
Identity = 95/158 (60.13%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 6   LWASRAASYLKISVPFRG--------FASALKDLKYASSHEWVKVEGDKATVGITDHAQD 65
           +WAS  A+ L++S   R         F+S L  LKYA+SHEWVK EG  AT+GITDHAQD
Sbjct: 5   IWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQD 64

Query: 66  HLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSS 125
           HLG+VV+V+LPE G SV +   FGAVESVKATSD+NSP+SG+I+EVN +L+ +PGL+NSS
Sbjct: 65  HLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSS 124

Query: 126 PYENGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           PYE+GW+IKV+ S+  EL +LM +++Y+KFCEEEDS H
Sbjct: 125 PYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162

[Close]

BLAST of Sed0023816 vs. ExPASy Swiss-Prot
Match: Q39732 (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala OX=35877 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-47
Identity = 94/158 (59.49%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 6   LWASRAASYLKISVPFRG--------FASALKDLKYASSHEWVKVEGDKATVGITDHAQD 65
           +WAS  A+ L++S   R         F+S L  LKYA+SHEWVK EG  AT+GITDHAQD
Sbjct: 5   MWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQD 64

Query: 66  HLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSS 125
           HLG+VV+V+LPE G SV +   FGAVESVKATSD+NSP+SG+I+EVN +L+ +PGL+NSS
Sbjct: 65  HLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSS 124

Query: 126 PYENGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           PYE+GW+IKV+ S+  EL +LM +++Y+KFCEEED+ H
Sbjct: 125 PYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162

[Close]

BLAST of Sed0023816 vs. ExPASy Swiss-Prot
Match: P25855 (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDH1 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.7e-47
Identity = 98/161 (60.87%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 6   LWASRAASYLKIS--------VPF---RGFASALKDLKYASSHEWVKVEGDKATVGITDH 65
           +WAS  A+ LK+S         PF   R F++ L+ LKYA+SHEWVK EG  AT+GIT H
Sbjct: 5   MWASSTANALKLSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATIGITAH 64

Query: 66  AQDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLV 125
           AQDHLG+VV+VELPE  TSV ++ SFGAVESVKATS+I SP+SG+IIEVN++L  SPGL+
Sbjct: 65  AQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTESPGLI 124

Query: 126 NSSPYENGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NSSPYE+GW+IKV+ S   EL++LM  ++Y+KFCEEED+ H
Sbjct: 125 NSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

[Close]

BLAST of Sed0023816 vs. ExPASy Swiss-Prot
Match: Q9LQL0 (Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDH3 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.3e-47
Identity = 97/162 (59.88%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 6   LWASRAASYLKIS--------VP----FRGFASALKDLKYASSHEWVKVEGDKATVGITD 65
           +WAS  A+ LK+S        +P     R F+S L+ LKYA+SHEWVK EG  AT+GITD
Sbjct: 5   MWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGITD 64

Query: 66  HAQDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGL 125
           HAQDHLG+VV+VELPE  +SV ++ SFGAVESVKATS+I SP+SG++IEVN +L  SPGL
Sbjct: 65  HAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGL 124

Query: 126 VNSSPYENGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           +NSSPYE+GW+IKV+ S   EL+ LM  ++Y+KFCEEED+ H
Sbjct: 125 INSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]

BLAST of Sed0023816 vs. ExPASy TrEMBL
Match: A0A5D3CLV3 (Glycine cleavage system H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00460 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.7e-77
Identity = 148/155 (95.48%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRL+WASRAASYL+IS+PFRGFAS +KDLKYA+SHEWVKVEGDKATVGITDHAQDHLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEEL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 155

[Close]

BLAST of Sed0023816 vs. ExPASy TrEMBL
Match: A0A1S3C983 (Glycine cleavage system H protein OS=Cucumis melo OX=3656 GN=LOC103498256 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.7e-77
Identity = 148/155 (95.48%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRL+WASRAASYL+IS+PFRGFAS +KDLKYA+SHEWVKVEGDKATVGITDHAQDHLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEEL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 155

[Close]

BLAST of Sed0023816 vs. ExPASy TrEMBL
Match: A0A0A0M3S2 (Glycine cleavage system H protein OS=Cucumis sativus OX=3659 GN=Csa_1G701910 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRL+WASRAASYL+IS+PFRGFAS +KDLKYA+SHEWVKVEGDKATVGITDHAQ HLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQGHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEEL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVSDSGELK LMDSEQYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKKLMDSEQYSKFCEEEDSKH 155

[Close]

BLAST of Sed0023816 vs. ExPASy TrEMBL
Match: A0A6J1EGY1 (Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111433999 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.3e-74
Identity = 141/155 (90.97%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRLLWASRAAS+L+IS+P+RGFAS +KDLKYA+SHEWVKVEGDKAT+GITDHAQDHLG
Sbjct: 1   MASRLLWASRAASFLRISIPYRGFASVVKDLKYATSHEWVKVEGDKATIGITDHAQDHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPE+G SVKQDGSFGAVESVKATSDINSPVSGKI+EVN+EL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEIGASVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVSDS ELKNLMDSEQYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDSKH 155

[Close]

BLAST of Sed0023816 vs. ExPASy TrEMBL
Match: A0A6J1CNS6 (Glycine cleavage system H protein OS=Momordica charantia OX=3673 GN=LOC111012706 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 145/155 (93.55%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFASALKDLKYASSHEWVKVEGDKATVGITDHAQDHLG 60
           MASRLLWASRAASYL+ISVP RG AS LKDLKYA+SHEWVKVEG++ATVGITDHAQDHLG
Sbjct: 1   MASRLLWASRAASYLRISVPHRGSASVLKDLKYATSHEWVKVEGNQATVGITDHAQDHLG 60

Query: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPYE 120
           DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEEL+SSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NGWIIKVEVS+SGELKNLMDS+QYSKFCEEEDSKH
Sbjct: 121 NGWIIKVEVSESGELKNLMDSDQYSKFCEEEDSKH 155

[Close]

BLAST of Sed0023816 vs. TAIR 10
Match: AT2G35120.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-65
Identity = 123/156 (78.85%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 1   MASRLLWASRAASYLKISVPFRGFAS-ALKDLKYASSHEWVKVEGDKATVGITDHAQDHL 60
           MA RL WASR AS+L+ISV  RGF+S  LKDLKYA SHEWVK++G+KAT GITDHAQDHL
Sbjct: 1   MACRLFWASRVASHLRISVAQRGFSSVVLKDLKYADSHEWVKIDGNKATFGITDHAQDHL 60

Query: 61  GDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLVNSSPY 120
           GDVVYVELP+VG SV Q  SFGAVESVKATSDINSPVSGK++EVNEEL  SPGLVNSSPY
Sbjct: 61  GDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVNSSPY 120

Query: 121 ENGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           E GWIIKVE+SD+GE + LMDS++YSKFCEEED+KH
Sbjct: 121 EQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDAKH 156

[Close]

BLAST of Sed0023816 vs. TAIR 10
Match: AT2G35370.1 (glycine decarboxylase complex H )

HSP 1 Score: 189.1 bits (479), Expect = 2.6e-48
Identity = 98/161 (60.87%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 6   LWASRAASYLKIS--------VPF---RGFASALKDLKYASSHEWVKVEGDKATVGITDH 65
           +WAS  A+ LK+S         PF   R F++ L+ LKYA+SHEWVK EG  AT+GIT H
Sbjct: 5   MWASSTANALKLSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATIGITAH 64

Query: 66  AQDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGLV 125
           AQDHLG+VV+VELPE  TSV ++ SFGAVESVKATS+I SP+SG+IIEVN++L  SPGL+
Sbjct: 65  AQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTESPGLI 124

Query: 126 NSSPYENGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           NSSPYE+GW+IKV+ S   EL++LM  ++Y+KFCEEED+ H
Sbjct: 125 NSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

[Close]

BLAST of Sed0023816 vs. TAIR 10
Match: AT1G32470.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 4.5e-48
Identity = 97/162 (59.88%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 6   LWASRAASYLKIS--------VP----FRGFASALKDLKYASSHEWVKVEGDKATVGITD 65
           +WAS  A+ LK+S        +P     R F+S L+ LKYA+SHEWVK EG  AT+GITD
Sbjct: 5   MWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGITD 64

Query: 66  HAQDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELNSSPGL 125
           HAQDHLG+VV+VELPE  +SV ++ SFGAVESVKATS+I SP+SG++IEVN +L  SPGL
Sbjct: 65  HAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGL 124

Query: 126 VNSSPYENGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 156
           +NSSPYE+GW+IKV+ S   EL+ LM  ++Y+KFCEEED+ H
Sbjct: 125 INSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

The following BLAST results are available for this feature:

BLAST of Sed0023816 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459025.1	9.6e-77	95.48	PREDICTED: glycine cleavage system H protein 2, mitochondrial [Cucumis melo] >KA...	[more]
XP_038893845.1	2.1e-76	94.84	glycine cleavage system H protein 2, mitochondrial [Benincasa hispida]	[more]
XP_004145438.1	3.1e-75	94.19	glycine cleavage system H protein 2, mitochondrial [Cucumis sativus] >KGN66866.1...	[more]
XP_022927059.1	2.6e-74	90.97	glycine cleavage system H protein 2, mitochondrial-like [Cucurbita moschata]	[more]
XP_023520355.1	4.5e-74	91.61	glycine cleavage system H protein 2, mitochondrial [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0023816 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82179	2.6e-64	78.85	Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P49359	5.7e-48	60.13	Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei OX=4226 GN...	[more]
Q39732	1.3e-47	59.49	Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala OX=35877 GN...	[more]
P25855	3.7e-47	60.87	Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q9LQL0	6.3e-47	59.88	Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Sed0023816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLV3	4.7e-77	95.48	Glycine cleavage system H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C983	4.7e-77	95.48	Glycine cleavage system H protein OS=Cucumis melo OX=3656 GN=LOC103498256 PE=3 S...	[more]
A0A0A0M3S2	1.5e-75	94.19	Glycine cleavage system H protein OS=Cucumis sativus OX=3659 GN=Csa_1G701910 PE=...	[more]
A0A6J1EGY1	1.3e-74	90.97	Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111433999 ...	[more]
A0A6J1CNS6	2.8e-74	93.55	Glycine cleavage system H protein OS=Momordica charantia OX=3673 GN=LOC111012706...	[more]

BLAST of Sed0023816 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35120.1	1.8e-65	78.85	Single hybrid motif superfamily protein	[more]
AT2G35370.1	2.6e-48	60.87	glycine decarboxylase complex H	[more]
AT1G32470.1	4.5e-48	59.88	Single hybrid motif superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017453	Glycine cleavage system H-protein, subgroup	TIGRFAM	TIGR00527	TIGR00527	coord: 29..152 e-value: 1.1E-52 score: 175.4
IPR033753	Glycine cleavage system H-protein/Simiate	PFAM	PF01597	GCV_H	coord: 31..150 e-value: 2.8E-50 score: 169.3
IPR033753	Glycine cleavage system H-protein/Simiate	CDD	cd06848	GCS_H	coord: 33..127 e-value: 8.32264E-52 score: 158.081
None	No IPR available	GENE3D	2.40.50.100		coord: 21..151 e-value: 2.1E-59 score: 200.9
None	No IPR available	PANTHER	PTHR11715:SF31	GLYCINE CLEAVAGE SYSTEM H PROTEIN	coord: 5..153
IPR002930	Glycine cleavage system H-protein	PANTHER	PTHR11715	GLYCINE CLEAVAGE SYSTEM H PROTEIN	coord: 5..153
IPR002930	Glycine cleavage system H-protein	HAMAP	MF_00272	GcvH	coord: 28..149 score: 39.731373
IPR003016	2-oxo acid dehydrogenase, lipoyl-binding site	PROSITE	PS00189	LIPOYL	coord: 71..100
IPR000089	Biotin/lipoyl attachment	PROSITE	PS50968	BIOTINYL_LIPOYL	coord: 46..128 score: 30.310823
IPR011053	Single hybrid motif	SUPERFAMILY	51230	Single hybrid motif	coord: 28..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023816.1	Sed0023816.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019464	glycine decarboxylation via glycine cleavage system
biological_process	GO:0009249	protein lipoylation
cellular_component	GO:0005960	glycine cleavage complex
cellular_component	GO:0005739	mitochondrion