Cla97C04G072560.1 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C04G072560.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	50S ribosomal protein 5, chloroplastic
Location	Cla97Chr04: 19758710 .. 19760184 (+)
Sequence length	468
RNA-Seq Expression	Cla97C04G072560.1
Synteny	Cla97C04G072560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCGCCGTCGCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTAAGTCTCTCTTCCTGGATTTTGACGGAATCGAATGAATGATTTTGTTTGATTTTGTATCTTCGTTTCTCTTTGTACTTCATGGTTTGCTGTGTGTTTATTCAAATGGCTAATTTTTGTTCTCGAACTCCAGAAACTATGTTGTTGTGCTTGAAATAATTTCCTCGCAGTCATTTGTTTGTCAGGCATTTTGTCAAACAGTTGGTATCTGTGTGCTGAGACTGTCGATTTTACGCTTCTCATTTGATGTGCTCTGGATCTCGCTTGCCTGAATTTGTTTTGTGTTCTGTATCTCGTGTTTTATATGCTGACTGCTCTGTTACTTGTTCATCATCCTCAATTTGATATATAGTTTACAAGTTTCGTAGTCTTGAAATACAGTTGTATTTCATTGAAGAGATATTGTTTTGTGAGTGAATTTCATATTTTATATATGTTGATTATTAATTTGATTCATGTAATATCAAATAAAGAGAAATTAACATTGCAAGGATCCCTAGTACTCCACGCCGTTAGATAACATATTAAAAAAATGAACTCAATCAAAAGCCCTTGGAATAGATTACGGTGTAGTTAATCTTTGGTTATATTACAAGCTTGTTAAGGTCTCTAGACAAGCTATTTAATCTTGGTTATATTAATGAAAAAAATATTACAAGCTTGTTGGCAAAACTTTTAAAGTTGTGTCTACTAACTAATGGGTCTCTAAACTTTTAATACTGTGTATGGTAGATCCCCAAGGTTTAAACAATATCTAGTAGGTCTTTAAAATATCAGTCTTAAACTATTAACTTTGTCTCCATTTGGCTTTGAACTTTTAAAAACATCTCATTTATCAAGTTTAGGATCTATCAAACACTTTTTAAAATTAAGAGATCGATTAGACATAATTCTAAAAGCTTAGAGACCAAATTTATACATACTTGGCTTTAATTTGAATGATTATTTCCTTGCATTCTATGTATCTCAGCCCAATTACCACTCCTTTGTTGTGGTTTCCATTTCAGGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAACACAGTGTTGTTAGTTGTCAAAGCTGCATCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

mRNA sequence

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCGCCGTCGCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAACACAGTGTTGTTAGTTGTCAAAGCTGCATCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Coding sequence (CDS)

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCGCCGTCGCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAACACAGTGTTGTTAGTTGTCAAAGCTGCATCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Protein sequence

MAFLLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Homology

[Close]

BLAST of Cla97C04G072560.1 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 257.3 bits (656), Expect = 8.5e-65
Identity = 141/156 (90.38%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 2   AFLLCSNPLSTSLHSFPFS--PSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNP 61
           +FLLCSNPLSTSLHSFPFS  PSPSPSCFPATSA PS MLLMKPIGFQPKHFNGVRL  P
Sbjct: 3   SFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPSPMLLMKPIGFQPKHFNGVRLGKP 62

Query: 62  SFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARM 121
           SFVEN   L+VKAASEIDA G+TDSSE QPPAEAK EDVPVDKLPLESKLQERLEQKARM
Sbjct: 63  SFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKARM 122

Query: 122 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 158

[Close]

BLAST of Cla97C04G072560.1 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 251.1 bits (640), Expect = 6.1e-63
Identity = 137/157 (87.26%), Postives = 144/157 (91.72%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRN 60
           MAFLLCSNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRN 60

Query: 61  PSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 120
            SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDVPVDKLPLESKLQERLEQK R
Sbjct: 61  VSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTR 120

Query: 121 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Cla97C04G072560.1 vs. NCBI nr
Match: XP_022949869.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 248.4 bits (633), Expect = 3.9e-62
Identity = 138/159 (86.79%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRL 60
           MAFLLCSNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENTV  +VKAASEIDATGETDS+EP+PPAEAK EDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of Cla97C04G072560.1 vs. NCBI nr
Match: KAG7013851.1 (50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.3 bits (630), Expect = 8.8e-62
Identity = 138/157 (87.90%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRN 60
           MAFLLCSNPLS SLHS  F  SPSPSPSCFPA  AT +SMLLMKP GFQPKHFNGVRLRN
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRN 60

Query: 61  PSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 120
           PSFVENTV  +VKAASEIDATGETDS+EP+P AEAK EDV VDKLPLESKLQERLEQKAR
Sbjct: 61  PSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVSVDKLPLESKLQERLEQKAR 120

Query: 121 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Cla97C04G072560.1 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 2.5e-61
Identity = 137/159 (86.16%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRL 60
           MAFLLCSNPLS SLHS  F    SPSPSPSCFP   A  +SMLLMKP GFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENTV   VKAASEIDATGETDS+EP+P AEAK EDVPVDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of Cla97C04G072560.1 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 78/157 (49.68%), Postives = 93/157 (59.24%), Query Frame = 0


Query: 4   LLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVE 63
           LLC N    SL S     S S S    + +  S +L +KP   + K  N V L   S   
Sbjct: 3   LLCFN----SLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNS 62

Query: 64  NTVLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQER---LEQKAR 123
           +   +VVKAA    A+G  D +EP+   E KT    VPVDKLPLESK  +    LE + +
Sbjct: 63  SHGRIVVKAA----ASG-VDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLK 122

Query: 124 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 MKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of Cla97C04G072560.1 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15
Identity = 65/152 (42.76%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 4   LLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVE 63
           LLC N  +T+        + S S FP  +A P S +    IG       G R+  P   +
Sbjct: 3   LLCFNSFTTT------PVTSSSSLFPHPTANPISRV---RIGLPTNCLKGFRILTPIVQK 62

Query: 64  NTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAK 123
                +  A++   A         +  ++ +++ V VDKLPLESKL+ER E+  +MKLAK
Sbjct: 63  PRKNSIFIASAAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAK 122

Query: 124 KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           KIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Sbjct: 123 KIRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV 145

[Close]

BLAST of Cla97C04G072560.1 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 65  TVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKK 124
           TV+ +V AA+E  A  + D S      + +  ++ V  LPLESKLQ +LEQK +MK+AKK
Sbjct: 58  TVVAMVSAAAEETAGEDGDQS------KVEEANISVQNLPLESKLQLKLEQKIKMKMAKK 117

Query: 125 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           IRLRR RL++KR LRK+G WPPSKMKKLKNV
Sbjct: 118 IRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of Cla97C04G072560.1 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.9e-63
Identity = 137/157 (87.26%), Postives = 144/157 (91.72%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRN 60
           MAFLLCSNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRN 60

Query: 61  PSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 120
            SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDVPVDKLPLESKLQERLEQK R
Sbjct: 61  VSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTR 120

Query: 121 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Cla97C04G072560.1 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.9e-62
Identity = 138/159 (86.79%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRL 60
           MAFLLCSNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENTV  +VKAASEIDATGETDS+EP+PPAEAK EDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of Cla97C04G072560.1 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.1e-61
Identity = 137/154 (88.96%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   AFLLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSF 61
           +FLL SNPLSTS H   FS SPSPSCFP TSA PSSMLLMKPIGFQPKHFNGVRLRN SF
Sbjct: 3   SFLLSSNPLSTSFH---FSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSF 62

Query: 62  VENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKL 121
           VENT  LVVKAASE DATGETDSS+ QP AEAK EDVPVDKLPLESKLQERLEQKARMKL
Sbjct: 63  VENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKL 122

Query: 122 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of Cla97C04G072560.1 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.2e-60
Identity = 133/157 (84.71%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRN 60
           MAFLLCSNPLS SLHS     SPSPSPSCFP   +  +SM LMKP GFQPKHFNGVRLRN
Sbjct: 1   MAFLLCSNPLSISLHSSTLSPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRLRN 60

Query: 61  PSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 120
           PSFVENTV  +VKAASEID TGETDS+EP+P AEAK EDVPVDKLPLESKLQERLEQKAR
Sbjct: 61  PSFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKAR 120

Query: 121 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Cla97C04G072560.1 vs. ExPASy TrEMBL
Match: A0A1S3C2X0 (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.5e-56
Identity = 130/154 (84.42%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 2   AFLLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSF 61
           +FLLCSNPLSTS H     P     CFP TSA PSSMLLMKPIGFQPK FNGVRLRN  F
Sbjct: 3   SFLLCSNPLSTSFHFSTLHP-----CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPF 62

Query: 62  VENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKL 121
           VENT  LVVKAASE DATGE DSSE QP AEAK EDVPVDKLPLESKLQERLEQKARMKL
Sbjct: 63  VENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKL 122

Query: 122 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of Cla97C04G072560.1 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 84.3 bits (207), Expect = 9.1e-17
Identity = 78/157 (49.68%), Postives = 93/157 (59.24%), Query Frame = 0


Query: 4   LLCSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVE 63
           LLC N    SL S     S S S    + +  S +L +KP   + K  N V L   S   
Sbjct: 3   LLCFN----SLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNS 62

Query: 64  NTVLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQER---LEQKAR 123
           +   +VVKAA    A+G  D +EP+   E KT    VPVDKLPLESK  +    LE + +
Sbjct: 63  SHGRIVVKAA----ASG-VDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLK 122

Query: 124 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156
           MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 MKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:

BLAST of Cla97C04G072560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881132.1	8.5e-65	90.38	50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r...	[more]
XP_022154476.1	6.1e-63	87.26	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]
XP_022949869.1	3.9e-62	86.79	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]	[more]
KAG7013851.1	8.8e-62	87.90	50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_023543496.1	2.5e-61	86.16	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C04G072560.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LER7	1.3e-15	49.68	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ...	[more]
P11891	1.7e-15	42.76	50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV...	[more]
P27684	1.4e-14	57.14	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]

BLAST of Cla97C04G072560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNT9	2.9e-63	87.26	50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GE62	1.9e-62	86.79	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A0A0L3F4	6.1e-61	88.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
A0A6J1HS41	5.2e-60	84.71	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A1S3C2X0	4.5e-56	84.42	50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P...	[more]

BLAST of Cla97C04G072560.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56910.1	9.1e-17	49.68	plastid-specific 50S ribosomal protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..155
None	No IPR available	PANTHER	PTHR34678:SF1	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 1..155
IPR040307	50S ribosomal protein 5, chloroplastic	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 1..155

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C04G072560	Cla97C04G072560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C04G072560.1-exon	Cla97C04G072560.1-exon-Cla97Chr04:19758710..19758815	exon
Cla97C04G072560.1-exon	Cla97C04G072560.1-exon-Cla97Chr04:19759823..19760184	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C04G072560.1-cds	Cla97C04G072560.1-cds-Cla97Chr04:19758710..19758815	CDS
Cla97C04G072560.1-cds	Cla97C04G072560.1-cds-Cla97Chr04:19759823..19760184	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C04G072560.1	Cla97C04G072560.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome