Sed0004773.1 (mRNA) Chayote v1

Overview


Name	Sed0004773.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like
Location	LG01: 12534698 .. 12536803 (-)
Sequence length	510
RNA-Seq Expression	Sed0004773.1
Synteny	Sed0004773.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGGAAGAAGACGGTGGAGTTCGACGAATCACCGCCGGATGGTTTCGATGCGGCGAATCCGTACAAGGATCCGGTGGCGATGCTGGAGATGAGGGAACACATTGTGAGGGAAAAATGGATCGATATCGAAAAGGCGAAGATTCTGAGGGAAAAGCTCCGATGGTGCTACCGCGTCGAAGGAATCAATCATCTTCAGAAATGCCGCCATCTCGTTCACCAATACCTTGAATCTACTCGAGGCATCGGCTGGGGAAAGGACGGCCGCCATCCATCCCTTCATGGTTCTCTTTTTTCGCCTCTCGTTTTGTTTCGTTTCGTTTCTCATCCATTTCAACGGTTTTTGGGGGGATTTTATGATTGGGTATTCATACTTGCACTGATAATCTGCTCTGAATTGGATTTTTATCTTCTAACTTGGTGAATTTAGATTTTATTTAAAATGATTTGGAGTCATGTCGATTTGTTGAAGTTGGGGTTTTGCTTCTTGGCTACATTGTTCTCCATATTCTTCTTCTGGTTCCCTATGTAATTTAAATGATGATGTTGTCTCTCTCTTCTTGCTCCTGATTAGGTCCTAAAGTGGAGGCAGTCGAATCGGAGTAATTTTCGGGGAGGAATAACCGTGAGTTTAAATGTTCGCTAATTTTATTACTTGATCCTACTGATTATAATTTTTTTTTTTCGAGTATATGAAATATGAATATTAGCTCTATATTTTATTTCGTGTACTGCTACGGGGCGTGAATTAAAAAAAAAAAAAAAAATATCAAATCAATGGTCAATAGTTCCATTTAGGGTGTGTTTGTGGCACCAGGTTGGTTATAATGGATGAAAGGTTATGATAAAAGGTGGGTTAGGGTGTGTTTGAGAGATTGGTTATATAACAAAAAGTAATATATGAAAGGTTTAGATAAATGGACACGCAGGTTTAGGTAACCACCGTTTATAATAAATGGTGGGGCAAACATGAGTTGGATTATTATAGCCAACTCGACCGTTTAAGAGCTATTCTACATTTTACTTGAGAACGAAATATGGTGGGGTGTGCCGTGAGAATAGTAGAGATGATGCCCATATTTCAAAAAAATTCCATTGAAGTTTTACTTCTTTGTTGAGCGAGAACTTTGTACCAATTACAGAAACCTTTCCTAACATTTTTGTCACTTTTTGAGAATGATTGAAATTGTTGTTCAGAAGCCACTCAATCATTGTTCTCTTACATGTGTATAGTAGACATGTTATTATCATTAAGCGGGGGGTCGTTGTATTTGTATACACCTTTGAGGATTTTGTTGCTATATGGGATCCTGCCTTGCAATTTGTTGTCCTTAGAAATGGTGTGAGTTGGGAAATTGTGATTCTATGGGATCCTCACAATTTGTTGTGCTTTGTTATGTGAGGTACTTCAAATTGGCAATCATTCCATTTAGTTAGAGTAGATCACTAGTGGTTGTGGTCCAACGAACAAAAGATAGGGAGAGAGATGCGTTAGGTATCCGAATACCTAACTAAACCTGTAACAAATATCAAGAACTCCAAACACAATATTGATGAAAATAACAAAGAAGTAACGGTAGTTCTTCCACTAATGAGTATCAATATTTCATTAATATTCAAAGAACAATAACAAAATAGTAGCAAGATAGAAATGAAAGACAAACCCATGGTGAATTCGAGAGCAATGAGAATCTCTCCTGAAAGTCTAAAGACCATACAAAAAACAGTTGCCCCGGGCCCAACCCTTGCCTATCCTTCCTTATTTATATGCAAACTCTCCCTCCATACAAGAAGGACCACTCATATGGTCGTCAGTTTTCTAAATAATTGACCCATTGGAAGGTCGTCAGTTTTCTAAATAATTGATCCATTGGAATACCCATTTTCCTTTTTAGAATACTCATGATTAATTGGGGGCTCGCAAGATGCTCTTTGAAGGACCTGGGTTGGCCTTCTTTTGTGTTGCATGCATTGTTGGTGTTCGTAACAGCCCACAGGATTTACTGCAACTAGATTAGTTGATGTTATTTAGGATTACTTCATCTATTTGTTCTATGTTGGAAAAATTGCCGAGAGACTTGATGAGGGAGGAGTGGGAATCTAG

mRNA sequence

ATGGGGAGGAAGAAGACGGTGGAGTTCGACGAATCACCGCCGGATGGTTTCGATGCGGCGAATCCGTACAAGGATCCGGTGGCGATGCTGGAGATGAGGGAACACATTGTGAGGGAAAAATGGATCGATATCGAAAAGGCGAAGATTCTGAGGGAAAAGCTCCGATGGTGCTACCGCGTCGAAGGAATCAATCATCTTCAGAAATGCCGCCATCTCGTTCACCAATACCTTGAATCTACTCGAGGCATCGGCTGGGGAAAGGACGGCCGCCATCCATCCCTTCATGGTCCTAAAGTGGAGGCAGTCGAATCGGATAGACATGTTATTATCATTAAGCGGGGGGTCGTTGTATTTGTATACACCTTTGAGGATTTTGTTGCTATATGGGATCCTGCCTTGCAATTTGTTGTCCTTAGAAATGGTGTGAGTTGGGAAATTGATTACTTCATCTATTTGTTCTATGTTGGAAAAATTGCCGAGAGACTTGATGAGGGAGGAGTGGGAATCTAG

Coding sequence (CDS)

ATGGGGAGGAAGAAGACGGTGGAGTTCGACGAATCACCGCCGGATGGTTTCGATGCGGCGAATCCGTACAAGGATCCGGTGGCGATGCTGGAGATGAGGGAACACATTGTGAGGGAAAAATGGATCGATATCGAAAAGGCGAAGATTCTGAGGGAAAAGCTCCGATGGTGCTACCGCGTCGAAGGAATCAATCATCTTCAGAAATGCCGCCATCTCGTTCACCAATACCTTGAATCTACTCGAGGCATCGGCTGGGGAAAGGACGGCCGCCATCCATCCCTTCATGGTCCTAAAGTGGAGGCAGTCGAATCGGATAGACATGTTATTATCATTAAGCGGGGGGTCGTTGTATTTGTATACACCTTTGAGGATTTTGTTGCTATATGGGATCCTGCCTTGCAATTTGTTGTCCTTAGAAATGGTGTGAGTTGGGAAATTGATTACTTCATCTATTTGTTCTATGTTGGAAAAATTGCCGAGAGACTTGATGAGGGAGGAGTGGGAATCTAG

Protein sequence

MGRKKTVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRVEGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESDRHVIIIKRGVVVFVYTFEDFVAIWDPALQFVVLRNGVSWEIDYFIYLFYVGKIAERLDEGGVGI

Homology

[Close]

BLAST of Sed0004773.1 vs. NCBI nr
Match: XP_022994087.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994089.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994090.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994091.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994092.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima])

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-51
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRV 60
           MGRKKTVEFDESPPD FDA +PYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR+
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           EG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLHGPKVEAVE++
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Sed0004773.1 vs. NCBI nr
Match: XP_022954577.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >XP_022954578.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >XP_022954579.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >KAG7012120.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 4.4e-51
Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRV 60
           MGRKKTVEFDESPPD FDA +PYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYR+
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           EG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLHGPKVEAVE++
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Sed0004773.1 vs. NCBI nr
Match: KAF8022523.1 (hypothetical protein BT93_F0134 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 211.1 bits (536), Expect = 7.6e-51
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MGRKK-TVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK TVEFDESPPD FDAANPYKDPVAMLEMREHIVREKWIDIEKAKILR++++WCYR
Sbjct: 1   MGRKKGTVEFDESPPDDFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILRDRVKWCYR 60

Query: 61  VEGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           VEGINHLQKCRHLV QYLESTRGIGWGKDGRHPSLHGPKVE+VESD
Sbjct: 61  VEGINHLQKCRHLVSQYLESTRGIGWGKDGRHPSLHGPKVESVESD 106

[Close]

BLAST of Sed0004773.1 vs. NCBI nr
Match: XP_030521299.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Rhodamnia argentea] >XP_030521300.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Rhodamnia argentea])

HSP 1 Score: 211.1 bits (536), Expect = 7.6e-51
Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MGRKK-TVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK TVEFDESPPD FDAANPYKDPVAMLEMREHIVREKWIDIEKAKILR++++WCYR
Sbjct: 1   MGRKKGTVEFDESPPDDFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILRDRVKWCYR 60

Query: 61  VEGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           +EGINHLQKCRHLV QYLESTRGIGWGKDGRHPSLHGPKVE+VESD
Sbjct: 61  IEGINHLQKCRHLVRQYLESTRGIGWGKDGRHPSLHGPKVESVESD 106

[Close]

BLAST of Sed0004773.1 vs. NCBI nr
Match: XP_038894613.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida] >XP_038894614.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida] >XP_038894615.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 7.6e-51
Identity = 95/105 (90.48%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRV 60
           MGRKKTVEFDESPPD FD  +PYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR+
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           EG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLHGPKVEA ES+
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAAESE 105

[Close]

BLAST of Sed0004773.1 vs. ExPASy Swiss-Prot
Match: Q94C12 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana OX=3702 GN=At3g18410 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.9e-45
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PDGFD  NPYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  VEGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           VEG+NH QKCRHLV QYL+STRG+GWGKD R  SLHGPK EAVE++
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of Sed0004773.1 vs. ExPASy Swiss-Prot
Match: Q9M9B4 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis thaliana OX=3702 GN=At1g49140 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.7e-43
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PDGFD  NPYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  VEGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVE 104
           VEG+NH QKCRHLV QYL++TRG+GWGKD R  SLHGPK  AVE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVE 104

[Close]

BLAST of Sed0004773.1 vs. ExPASy Swiss-Prot
Match: Q03015 (NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=nuo-12.3 PE=3 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-08
Identity = 25/65 (38.46%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 14 PDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRVEGINHLQKCRHLV 73
          P  FD  + Y D   + + ++ I+RE+W+ +   +++RE+L  CY  EG+NHL+KC HL 
Sbjct: 17 PPTFDGVD-YNDTKRLKQAQDAIIREQWVRVMMGRLVREELSKCYYREGVNHLEKCGHLR 76

Query: 74 HQYLE 79
           +YL+
Sbjct: 77 ERYLQ 80

[Close]

BLAST of Sed0004773.1 vs. ExPASy TrEMBL
Match: A0A6J1JUQ8 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita maxima OX=3661 GN=LOC111489918 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 7.4e-52
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRV 60
           MGRKKTVEFDESPPD FDA +PYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR+
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           EG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLHGPKVEAVE++
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Sed0004773.1 vs. ExPASy TrEMBL
Match: A0A6J1GRC0 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita moschata OX=3662 GN=LOC111456807 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.2e-51
Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRV 60
           MGRKKTVEFDESPPD FDA +PYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYR+
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           EG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLHGPKVEAVE++
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Sed0004773.1 vs. ExPASy TrEMBL
Match: A0A059A4F1 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02221 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.8e-51
Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MGRKK-TVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK TVEFDESPPD FDAANPYKDPVAMLEMREHIVREKWIDIEKAKI+R++++WCYR
Sbjct: 1   MGRKKGTVEFDESPPDDFDAANPYKDPVAMLEMREHIVREKWIDIEKAKIIRDRVKWCYR 60

Query: 61  VEGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           VEGINHLQKCRHLV QYLESTRGIGWGKDGRHPSLHGPKVE+VESD
Sbjct: 61  VEGINHLQKCRHLVRQYLESTRGIGWGKDGRHPSLHGPKVESVESD 106

[Close]

BLAST of Sed0004773.1 vs. ExPASy TrEMBL
Match: A0A6J1KJX6 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita maxima OX=3661 GN=LOC111495279 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 8.2e-51
Identity = 94/105 (89.52%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRV 60
           MGRKKTVEFDESPPD FD  +PYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYR+
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           EG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLHGPKVE+VES+
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]

BLAST of Sed0004773.1 vs. ExPASy TrEMBL
Match: A0A6J1E7Z3 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita moschata OX=3662 GN=LOC111431621 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 8.2e-51
Identity = 94/105 (89.52%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRV 60
           MGRKKTVEFDESPPD FD  +PYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYR+
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           EG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLHGPKVE+VES+
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]

BLAST of Sed0004773.1 vs. TAIR 10
Match: AT3G18410.1 (Complex I subunit NDUFS6 )

HSP 1 Score: 182.2 bits (461), Expect = 3.5e-46
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PDGFD  NPYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  VEGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           VEG+NH QKCRHLV QYL+STRG+GWGKD R  SLHGPK EAVE++
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of Sed0004773.1 vs. TAIR 10
Match: AT3G18410.2 (Complex I subunit NDUFS6 )

HSP 1 Score: 182.2 bits (461), Expect = 3.5e-46
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PDGFD  NPYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  VEGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVESD 106
           VEG+NH QKCRHLV QYL+STRG+GWGKD R  SLHGPK EAVE++
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of Sed0004773.1 vs. TAIR 10
Match: AT1G49140.1 (Complex I subunit NDUFS6 )

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-44
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDGFDAANPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PDGFD  NPYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  VEGINHLQKCRHLVHQYLESTRGIGWGKDGRHPSLHGPKVEAVE 104
           VEG+NH QKCRHLV QYL++TRG+GWGKD R  SLHGPK  AVE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVE 104

The following BLAST results are available for this feature:

BLAST of Sed0004773.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994087.1	1.5e-51	91.43	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita m...	[more]
XP_022954577.1	4.4e-51	90.48	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita m...	[more]
KAF8022523.1	7.6e-51	92.45	hypothetical protein BT93_F0134 [Corymbia citriodora subsp. variegata]	[more]
XP_030521299.1	7.6e-51	91.51	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Rhodamnia a...	[more]
XP_038894613.1	7.6e-51	90.48	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispid...	[more]

BLAST of Sed0004773.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C12	4.9e-45	79.25	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis th...	[more]
Q9M9B4	2.7e-43	78.85	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis th...	[more]
Q03015	6.3e-08	38.46	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crass...	[more]

BLAST of Sed0004773.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUQ8	7.4e-52	91.43	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita...	[more]
A0A6J1GRC0	2.2e-51	90.48	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita...	[more]
A0A059A4F1	4.8e-51	91.51	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02221 PE=3 SV...	[more]
A0A6J1KJX6	8.2e-51	89.52	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita maxi...	[more]
A0A6J1E7Z3	8.2e-51	89.52	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita mosc...	[more]

BLAST of Sed0004773.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18410.1	3.5e-46	79.25	Complex I subunit NDUFS6	[more]
AT3G18410.2	3.5e-46	79.25	Complex I subunit NDUFS6	[more]
AT1G49140.1	1.9e-44	78.85	Complex I subunit NDUFS6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039993	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	PANTHER	PTHR13094	NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT	coord: 1..104
None	No IPR available	PANTHER	PTHR13094:SF3	BNAA01G26750D PROTEIN	coord: 1..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0004773	Sed0004773	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004773.1-exon	Sed0004773.1-exon-LG01:12534698..12534769	exon
Sed0004773.1-exon	Sed0004773.1-exon-LG01:12535445..12535568	exon
Sed0004773.1-exon	Sed0004773.1-exon-LG01:12536200..12536227	exon
Sed0004773.1-exon	Sed0004773.1-exon-LG01:12536518..12536803	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004773.1-cds	Sed0004773.1-cds-LG01:12534698..12534769	CDS
Sed0004773.1-cds	Sed0004773.1-cds-LG01:12535445..12535568	CDS
Sed0004773.1-cds	Sed0004773.1-cds-LG01:12536200..12536227	CDS
Sed0004773.1-cds	Sed0004773.1-cds-LG01:12536518..12536803	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0004773.1	Sed0004773.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I