Sed0004554 (gene) Chayote v1

Overview


Name	Sed0004554
Type	gene
Organism	Sechium edule (Chayote v1)
Description	HTH myb-type domain-containing protein
Location	LG01: 1312582 .. 1313897 (-)
RNA-Seq Expression	Sed0004554
Synteny	Sed0004554

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATTAATGGGTTTGATTTGAACGAAGAAGCCATAACCGTCGAAGAAGAAAACTCGAGCAGCAGCAACAATGGAAGCAATGAGGAGAAAGATCAAGAAAGAATTGGGGGAGTTAGAAAATATTCAAGATCCAAAATGCCAAGGCTTCGTTGGACTCCCGATCTTCATTTTTCCTTTGTAAATGCTGTTCAAAGACTCGGCGGACAAGAAAGTAAGCCCGAACGTTTTCTCTTCGCGAGCTTCAGTTGTTTTTCTAGATCGGTGTTTTGAACCTATGACCTCCAACGATGAAGAGATTATAAAAAGCTTTGCATTTGTTAACCGTTTGATTTTTTGTTTTGTTTGATGAAAATTGTGTTTGTTTTCTTGTTATTTCTTTACGATTTCAAAAATAATTTCTATTAACCTTTTAGTTTTCAAAACTTTATTTGAATTTTTGGTGATAAATTTTGTTCACATACATTACTCCTAAATTATGAAGTTTTGTTAAAACTACACACTTGACTTTTAACACGATTAATTAGCATATGACTTTGTTAAGTATATCACATTTTCAAACTTTCTTATTTGAAAATCAGTGCTTTGTACTTTATTAAACTAAAAAATTTAACTTATGTACTTTGTTAAAAGTGTTACAATCAAGCTTTTGAAGTAACAAATTGAAAGAGGATTGCTTACCGTACTTACTAAACTAAAGAGTTTTGATTGTAACACTGAACAAAATTTCGATCAAGACTGATGGATCAAGTTAAAAGTTTATTCAAAATTTAAGGGTGTAACGATTACAAATTTCATGGTTTAGAAGTATTTTATGACATTTTTCTTTTAAAAATATTTGTAAAAAGTGGGCAAAATGAAAAACTCATTAATGAAAGTAGTATATATAATTTTGAAAAGAAAAAAATCAAATATTAATTTTTTTAGCGATTGGGTTCATGTTTTTTTTAGTAAATTAGGAAGTATTATGATTCACTCCCTCTTACACTTTAGTAAAAATAGATAAATGAAATAAAACACATCTGAAATTGAATTGAATTGGATAATTTTGTAGGGGCAACTCCAAAGTTGGTACTTCAGTTGATGAATGTAAGAGGGCTAAGCATTTCCCATGTAAAAAGTCATTTGCAGGTACCCAGAATAATATTATTATTATTATTATTTTGCAGTATAAAACATATATACTATATGTTTTTTTTGGGATTCTAATTTTATGAATTCGAATTTTGGGTTTGTGAATGTAGATGTATCGAAGTAAGAAGCTGGATGAGTCTGGACAAGGTAGGGTTTTTAATCAACAAAGCTGGATTCTCTAG

mRNA sequence

ATGATGATTAATGGGTTTGATTTGAACGAAGAAGCCATAACCGTCGAAGAAGAAAACTCGAGCAGCAGCAACAATGGAAGCAATGAGGAGAAAGATCAAGAAAGAATTGGGGGAGTTAGAAAATATTCAAGATCCAAAATGCCAAGGCTTCGTTGGACTCCCGATCTTCATTTTTCCTTTGTAAATGCTGTTCAAAGACTCGGCGGACAAGAAAGGGCAACTCCAAAGTTGGTACTTCAGTTGATGAATGTAAGAGGGCTAAGCATTTCCCATGTAAAAAGTCATTTGCAGATGTATCGAAGTAAGAAGCTGGATGAGTCTGGACAAGGTAGGGTTTTTAATCAACAAAGCTGGATTCTCTAG

Coding sequence (CDS)

ATGATGATTAATGGGTTTGATTTGAACGAAGAAGCCATAACCGTCGAAGAAGAAAACTCGAGCAGCAGCAACAATGGAAGCAATGAGGAGAAAGATCAAGAAAGAATTGGGGGAGTTAGAAAATATTCAAGATCCAAAATGCCAAGGCTTCGTTGGACTCCCGATCTTCATTTTTCCTTTGTAAATGCTGTTCAAAGACTCGGCGGACAAGAAAGGGCAACTCCAAAGTTGGTACTTCAGTTGATGAATGTAAGAGGGCTAAGCATTTCCCATGTAAAAAGTCATTTGCAGATGTATCGAAGTAAGAAGCTGGATGAGTCTGGACAAGGTAGGGTTTTTAATCAACAAAGCTGGATTCTCTAG

Protein sequence

MMINGFDLNEEAITVEEENSSSSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQGRVFNQQSWIL

Homology

[Close]

BLAST of Sed0004554 vs. NCBI nr
Match: XP_022947230.1 (uncharacterized protein LOC111451155 [Cucurbita moschata] >XP_022947231.1 uncharacterized protein LOC111451155 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDL 60
           MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDL
Sbjct: 1   MMINGFDLNEEATAIDEEN-SSSNNGSLEEEKEEEDQRRSGGVRKYSRSKMPRLRWTPDL 60

Query: 61  HFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ 110
           H +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKKLDESGQ
Sbjct: 61  HLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ 112

[Close]

BLAST of Sed0004554 vs. NCBI nr
Match: XP_023533211.1 (uncharacterized protein LOC111795167 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDL 60
           MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDL
Sbjct: 1   MMINGFDLNEEATAIDEEN-SSSNNGSLEEEKEEEDQRRSGGVRKYSRSKMPRLRWTPDL 60

Query: 61  HFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ 110
           H +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKKLDESGQ
Sbjct: 61  HLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ 112

[Close]

BLAST of Sed0004554 vs. NCBI nr
Match: KAG6604776.1 (putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDL 60
           MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDL
Sbjct: 1   MMINGFDLNEEATAIDEEN-SSSNNGSLEEEKEEEDQRRSGGVRKYSRSKMPRLRWTPDL 60

Query: 61  HFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ 110
           H +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKKLDESGQ
Sbjct: 61  HLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ 112

[Close]

BLAST of Sed0004554 vs. NCBI nr
Match: XP_022970836.1 (two-component response regulator ARR10-like [Cucurbita maxima] >XP_022970838.1 two-component response regulator ARR10-like [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDL 60
           MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDL
Sbjct: 1   MMINGFDLNEEATAIDEEN-SSSNNGSLEEEKEEEDQRRSGGVRKYSRSKMPRLRWTPDL 60

Query: 61  HFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ 110
           H +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKKLDESGQ
Sbjct: 61  HLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ 112

[Close]

BLAST of Sed0004554 vs. NCBI nr
Match: KAG7034901.1 (putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDL 60
           MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDL
Sbjct: 28  MMINGFDLNEEATAIDEEN-SSSNNGSLEEEKEEEDQRRSGGVRKYSRSKMPRLRWTPDL 87

Query: 61  HFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ 110
           H +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKKLDESGQ
Sbjct: 88  HLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ 139

[Close]

BLAST of Sed0004554 vs. ExPASy Swiss-Prot
Match: A3AWH5 (Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOF1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.9e-24
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 35  RIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKS 94
           R G VR+Y RSK+PRLRWT +LH SFV A++ LGGQ++ATPKL+LQLM V+GL+ISHVKS
Sbjct: 10  RNGAVRQYIRSKVPRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKS 69

Query: 95  HLQMYRSKKLDESGQGR 112
           HLQMYR  +L   G GR
Sbjct: 70  HLQMYRCSRLGSHGTGR 86

[Close]

BLAST of Sed0004554 vs. ExPASy Swiss-Prot
Match: Q700D9 (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-22
Identity = 50/74 (67.57%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 36  IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSH 95
           IGGVR Y RS +PRLRWTP+LH SFV+AV  LGGQ +ATPKLVL++M+V+GL+ISHVKSH
Sbjct: 12  IGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSH 71

Query: 96  LQMYRSKKLDESGQ 110
           LQMYR  ++   G+
Sbjct: 72  LQMYRGSRITLLGK 85

[Close]

BLAST of Sed0004554 vs. ExPASy Swiss-Prot
Match: A0A0P0X0C0 (Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN=MPH1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.7e-20
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 38  GVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQ 97
           GVR+Y+RS++PR+RWT ++H  FV AV+ LGGQ+ ATPK +LQLM V+G+SISH+KSHLQ
Sbjct: 8   GVRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQ 67

Query: 98  MYRS 102
           MYRS
Sbjct: 68  MYRS 71

[Close]

BLAST of Sed0004554 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-16
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 26  GSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVR 85
           G + ++    + G+++  R+  PR+RWT  LH  FV+AVQ LGG ERATPK VL+LMNV+
Sbjct: 86  GRDFKRSSSSMVGLKRSIRA--PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVK 145

Query: 86  GLSISHVKSHLQMYRSKKLDESG 109
            L+++HVKSHLQMYR+ K  + G
Sbjct: 146 DLTLAHVKSHLQMYRTVKCTDKG 166

[Close]

BLAST of Sed0004554 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-15
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 46  KMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKK 104
           + PR+RWT  LH  FV+AV+ LGG ERATPK VL+LM+V+ L+++HVKSHLQMYR+ K
Sbjct: 323 RAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 380

[Close]

BLAST of Sed0004554 vs. ExPASy TrEMBL
Match: A0A6J1I531 (two-component response regulator ARR10-like OS=Cucurbita maxima OX=3661 GN=LOC111469695 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDL 60
           MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDL
Sbjct: 1   MMINGFDLNEEATAIDEEN-SSSNNGSLEEEKEEEDQRRSGGVRKYSRSKMPRLRWTPDL 60

Query: 61  HFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ 110
           H +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKKLDESGQ
Sbjct: 61  HLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ 112

[Close]

BLAST of Sed0004554 vs. ExPASy TrEMBL
Match: A0A6J1G6A3 (uncharacterized protein LOC111451155 OS=Cucurbita moschata OX=3662 GN=LOC111451155 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDL 60
           MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDL
Sbjct: 1   MMINGFDLNEEATAIDEEN-SSSNNGSLEEEKEEEDQRRSGGVRKYSRSKMPRLRWTPDL 60

Query: 61  HFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ 110
           H +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKKLDESGQ
Sbjct: 61  HLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQ 112

[Close]

BLAST of Sed0004554 vs. ExPASy TrEMBL
Match: A0A0A0KBB2 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G157640 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.4e-36
Identity = 89/126 (70.63%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 2   MINGFDLNEEAITVEE--------ENSSSSNNGSNEEKDQER----------IGGVRKYS 61
           MINGFDLNEEA  ++E         +++SSNNGS EE ++E            G VRKYS
Sbjct: 1   MINGFDLNEEAKGIDEGFGEGNSNNSNTSSNNGSMEEVEKEEEFEEQRSRSGHGNVRKYS 60

Query: 62  RSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKK 110
           RSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKK
Sbjct: 61  RSKMPRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 120

[Close]

BLAST of Sed0004554 vs. ExPASy TrEMBL
Match: A0A1S3BK41 (uncharacterized protein LOC103490495 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490495 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.0e-36
Identity = 89/126 (70.63%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 2   MINGFDLNEEAITVEE--------ENSSSSNNGSNEEKDQER----------IGGVRKYS 61
           MINGFDLNEEA  ++E         +++SSNNGS EE ++E            G VRKYS
Sbjct: 1   MINGFDLNEEAKGMDEGFGEGNSNNSNTSSNNGSMEEVEKEEEFDEQRSRSGHGSVRKYS 60

Query: 62  RSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKK 110
           RSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKK
Sbjct: 61  RSKMPRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 120

[Close]

BLAST of Sed0004554 vs. ExPASy TrEMBL
Match: A0A1S3BJ91 (probable transcription factor KAN2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490495 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.0e-36
Identity = 89/126 (70.63%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 2   MINGFDLNEEAITVEE--------ENSSSSNNGSNEEKDQER----------IGGVRKYS 61
           MINGFDLNEEA  ++E         +++SSNNGS EE ++E            G VRKYS
Sbjct: 1   MINGFDLNEEAKGMDEGFGEGNSNNSNTSSNNGSMEEVEKEEEFDEQRSRSGHGSVRKYS 60

Query: 62  RSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKK 110
           RSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHLQMYRSKK
Sbjct: 61  RSKMPRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 120

[Close]

BLAST of Sed0004554 vs. TAIR 10
Match: AT2G38300.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-29
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 10  EEAITVEEENSSSSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGG 69
           EE    E E S  S+N + EE D++    VR Y RSK+PRLRWTPDLH  FV AV+RLGG
Sbjct: 19  EEEEEEEGEESKVSSNSTVEESDKKT--KVRPYVRSKVPRLRWTPDLHLRFVRAVERLGG 78

Query: 70  QERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ 110
           QERATPKLV Q+MN++GLSI+HVKSHLQMYRSKK+D+ GQ
Sbjct: 79  QERATPKLVRQMMNIKGLSIAHVKSHLQMYRSKKIDDQGQ 116

[Close]

BLAST of Sed0004554 vs. TAIR 10
Match: AT2G42660.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-28
Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 7   DLNEEAITVEEENSSSSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQR 66
           DLN E  TVE+ N   S   S E++DQ     VR+Y RS MPRLRWTPDLH SFV AVQR
Sbjct: 15  DLNREE-TVEKNNEEES---SVEDEDQ-ITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQR 74

Query: 67  LGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ 110
           LGG +RATPKLVL++MN++GLSI+HVKSHLQMYRSKKL+ S +
Sbjct: 75  LGGPDRATPKLVLEMMNLKGLSIAHVKSHLQMYRSKKLEPSSR 112

[Close]

BLAST of Sed0004554 vs. TAIR 10
Match: AT2G40260.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-27
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 9   NEEAITVEEENSSSSNNGSN----------EEKDQERIGGVRKYSRSKMPRLRWTPDLHF 68
           +EE    EEE S   +  SN           +++++  G VR Y+RSK PRLRWTP+LH 
Sbjct: 34  DEEGEEDEEERSGDQSPSSNSYEEESGSHHHDQNKKNGGSVRPYNRSKTPRLRWTPELHI 93

Query: 69  SFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQG 111
            F+ AV+RLGG +RATPKLVLQLMNV+GLSI+HVKSHLQMYRSKK DE  +G
Sbjct: 94  CFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKTDEPNEG 145

[Close]

BLAST of Sed0004554 vs. TAIR 10
Match: AT1G14600.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-23
Identity = 50/74 (67.57%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 36  IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSH 95
           IGGVR Y RS +PRLRWTP+LH SFV+AV  LGGQ +ATPKLVL++M+V+GL+ISHVKSH
Sbjct: 12  IGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSH 71

Query: 96  LQMYRSKKLDESGQ 110
           LQMYR  ++   G+
Sbjct: 72  LQMYRGSRITLLGK 85

[Close]

BLAST of Sed0004554 vs. TAIR 10
Match: AT2G02060.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-22
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 22  SSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQL 81
           SS    N   +  +  GVR Y RS +PRLRWTPDLH  FV+AV+ LGGQ RATPKLVL++
Sbjct: 4   SSGRNGNGSFNGNKFHGVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKM 63

Query: 82  MNVRGLSISHVKSHLQMYRS------KKLDESGQGRVFNQQ 117
           M+V+GL+ISHVKSHLQMYR       +K +ES    +  +Q
Sbjct: 64  MDVKGLTISHVKSHLQMYRGGSKLTLEKPEESSSSSIRRRQ 104

The following BLAST results are available for this feature:

BLAST of Sed0004554 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947230.1	2.7e-42	84.96	uncharacterized protein LOC111451155 [Cucurbita moschata] >XP_022947231.1 unchar...	[more]
XP_023533211.1	2.7e-42	84.96	uncharacterized protein LOC111795167 [Cucurbita pepo subsp. pepo]	[more]
KAG6604776.1	2.7e-42	84.96	putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022970836.1	2.7e-42	84.96	two-component response regulator ARR10-like [Cucurbita maxima] >XP_022970838.1 t...	[more]
KAG7034901.1	2.7e-42	84.96	putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Sed0004554 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A3AWH5	9.9e-24	67.53	Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q700D9	2.4e-22	67.57	Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=37...	[more]
A0A0P0X0C0	8.7e-20	67.19	Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9FJV5	3.4e-16	51.81	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q0J235	6.5e-15	63.79	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]

BLAST of Sed0004554 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I531	1.3e-42	84.96	two-component response regulator ARR10-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1G6A3	1.3e-42	84.96	uncharacterized protein LOC111451155 OS=Cucurbita moschata OX=3662 GN=LOC1114511...	[more]
A0A0A0KBB2	2.4e-36	70.63	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G15764...	[more]
A0A1S3BK41	4.0e-36	70.63	uncharacterized protein LOC103490495 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BJ91	4.0e-36	70.63	probable transcription factor KAN2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Sed0004554 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38300.1	2.8e-29	66.00	myb-like HTH transcriptional regulator family protein	[more]
AT2G42660.1	3.1e-28	66.02	Homeodomain-like superfamily protein	[more]
AT2G40260.1	1.5e-27	57.14	Homeodomain-like superfamily protein	[more]
AT1G14600.1	1.7e-23	67.57	Homeodomain-like superfamily protein	[more]
AT2G02060.1	2.5e-22	54.46	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 50..100 e-value: 1.8E-7 score: 31.2
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 44..104 score: 9.927403
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 48..103 e-value: 3.5E-24 score: 82.9
None	No IPR available	GENE3D	1.10.10.60		coord: 47..104 e-value: 2.3E-26 score: 93.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR31314:SF2	MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN	coord: 13..109
IPR044848	PHR1-like	PANTHER	PTHR31314	MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE	coord: 13..109
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 46..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004554.1	Sed0004554.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity