CmUC01G012500 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G012500
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Photosystem II protein D1
Location	CmU531Chr01: 24831815 .. 24834713 (+)
RNA-Seq Expression	CmUC01G012500
Synteny	CmUC01G012500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACGTCGTTTTATCCTGCCCGCGTTTTCCTCTCACCGACCACTTTTCTACTTCTTCCTCTCTCCTTTTTCTTTTTGTCTTTTTTTTTTTTTTTTTATCCGATTATCCAATCCCGACTTTAGTTTTTTTTTTTTTTCTTCCTATTTTTAAATTGCTTATTTTATTCTTTCTTACTCTTGATTTTAGTTCCTTTTAGTATATATACTTTTAAAAAGTGACCGTTTTGGATCATTTCACTCTATTTTTGTTTAAACTTTAAGGAGACGTTTGAGGCTAAGTTGGTTATTATAGTTTATGGGGTATAATAATCAATATGTTTGAGATGTAGACTATTTTAGTATAGGTAAGAAATGATAAACACAGTAATAAATTAAAAAAAAAGAGAGAGAGAATGAGTGAAAAATAGTAAATAAATAGAAAAGAAGGGTTTTGAAATAGTATTTATTATACTTAATTGTAGGTTACAAAATAGTTGTTAAAATGAACCAAAATCGAAATTATACAATGACCAAAATGAACCAAAATTAAAGTACAATAACCTTAATGTACCAATATTGGAAAGCATAAATACCAAAAATAACATTTTGAAAGTCTTAAAACTAAAATGAATCAAAGTCGAAATTACAACAATCAAAATAGAAATTCTAAAAGTATATGAACCAAAATTAAAGTAAAATCACCGAAATGAACATTTTGAAAGAACAAGAATCAAAATGAACCAAAAGTAGAATGTACGTGCATTTGTTCCTGCGGAGAATCCTTGATTAGAGGGAGGGAGCAAGGAGAATTTTCTCCCCTTTGGCTAAATGGGGATGGGGACGGGGATTATATTCCCCATCCCCGACTCCAAACATGCCCGCCCCACCTTATTTAATTTTTTAAATATATATTTATTTATTTATTTAAAAAGAATTAAAAACTTCATACCATTCATCTTTTTCTTCTGAGTGTGTTAAAATTAAAAAAACTTAAAATATTAAACTCAATTTACCTGCTCTTTGTGAATTTAAAAACGTTCGATTTAGTTCTCTTTTTTGTTTAGGTTTAGTTTGATTTTTGGTATATCTTAGGTTTGAGATTAGGTAGTTTGATTTTTATAATTTTATAAATCTTAATTTATGCAATTTTGAAAGGTCTCTACATGATTGGAGAATTTCAATTTAATTTATAATATAGTTCAGTCAAATTTCATAAATAGTTTTTAAAGCTACTATATTCACGCGTTGTGTTTTTAACTTAGACAGAAATTGGATTTCTTAAATTAGATAATTGTCTCAATTTGTTGTGTTAAATATTTGAGGTTCAAATTACAAATTGGGATTCTTTTTAAAAACTAATGTTATTTTAATATTTATTGATAAAAATGGAGTTAAGGGGAAACTATTGACAATTTTGGGATAGTAAAATTGTGGATGGGATCCACAAGTATGGATAATCAAGGACTGGGTCCACGATTTAGGGCATTATTGTGGATTAGGTCCACAATTAAGATGCCACGCGATTGCCGAAGTAGGAATTTCTCTACTAACTTCCCGAACCAGATGACGAGACTGCCACATGTTGAGTTGACTAGCAAATTGTGGACAGAGTCCCCCCCCCCCCCCCCCCCCTTTTCCCTCTCCCAGCCAATCGCCGCCCACCGTCTACTGAACGCCGTCATCTTCTCCCTGTCATCCACCTATGGCATATGTATATACATTTTTTCCAATCATATGATAAATATCTATAGATCTAATGTTTTATTTTGTATGGATGAATGGGCTTGTAGTTCTAGAGTTTGTTTTTACCAAACAATTTGTTTTGTTTAAAATTTGGAAGATCTAGCTTGTTTTTTTACCATTAGTTTGAGTTTGAGTTTTTTTATCGTTAGTTTGGACTTCAAATTTTATTTTTGAATTGTTTGAGTGTTTGGACTTGAAAGTTTTTATTGTTGTTTGGACTGATGATGGATTGGGCTGTAGGGTTTTTTTTTTTTTTGAAAATTTGGACTCATCTCTAAAACGTAGTAACTTAGACTAATGTTTTTGGACTAATAGATTTAACATTGTAGCATCACAAGTCCAATTACAACCTTTAGATCACATTATGGGATATCCACTCAATGTCAGGTATTACTTTTTGTATATATTCATTCTCTTGTCAATTTAAGTAATAAAATATTTTAATTGTTTTATATTCATGTGTTAGATGAAGCGGTGGCTTAGCTATATCTCAACAATCAGCAAACATGTTGCTGGTATATCGACTATTATTTGATCAATTGATGTAGAATTAGGTAATAATATATTTATTTCATATACAAATGAATATTACATATTATTTTGGTTCCTAATATTAGTGTATGAGATTTCAGATCAATTGGGCGACATACACACCACATATTATGTCGTTATTGTCTGATTATTGTTAGCCCACTTATATGCTTTTATATCGTAGAGTGGCATCAGCTAGATCGGGTGTTGAGACAGTTTGATCTTCGACAAACGGTACCAACGTTGTGTTGTACACTCCTGCAACTACACCAGATTTATTTAAGAGGTAAACATGTCCAAAACTAGCGTCAAATTCATGCAAAATATATGTCCTTGTGGCATGCCCGTCATGATTGTTGTCATAAAGAGAAACTTCTAGTTTATCAGGGAAACCATAGAAAATGAATCTGCTAATTCAGGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

mRNA sequence

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

Coding sequence (CDS)

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

Protein sequence

MTCTGRLDSMQQSHLPVGHFDFPTFGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGLKYVSGSPL

Homology

[Close]

BLAST of CmUC01G012500 vs. NCBI nr
Match: VDD65979.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 53.9 bits (128), Expect = 6.8e-04
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS 62
           FGQEEET +IVAA+GYFGRLIFQYA+ + +   YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275

[Close]

BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: A5A8K9 (Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=psbA2 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ S +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFSNSRSLH 272

[Close]

BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: P07826 (Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psbA1 PE=1 SV=3)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]

BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: B1XIP3 (Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=psbA3 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]

BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: Q8DIV4 (Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=psbA3 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]

BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: P48265 (Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]

BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match: A0A3P6HJ61 (Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS 62
           FGQEEET +IVAA+GYFGRLIFQYA+ + +   YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275

[Close]

BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match: A0A287U321 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL 67
          FGQEEET +IV A+GYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 57 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 97

[Close]

BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match: A0A287U3B3 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL 67
           FGQEEET +IV A+GYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 157 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 197

[Close]

BLAST of CmUC01G012500 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLH 272

The following BLAST results are available for this feature:

BLAST of CmUC01G012500 vs. NCBI nr


Match Name	E-value	Identity	Description
VDD65979.1	6.8e-04	70.27	unnamed protein product [Brassica oleracea]	[more]

BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5A8K9	1.3e-05	70.59	Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=32972...	[more]
P07826	2.2e-05	67.65	Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1...	[more]
B1XIP3	2.2e-05	67.65	Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /...	[more]
Q8DIV4	2.2e-05	67.65	Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=19...	[more]
P48265	2.2e-05	67.65	Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1	[more]

BLAST of CmUC01G012500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3P6HJ61	3.3e-04	70.27	Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV...	[more]
A0A287U321	4.3e-04	69.05	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]
A0A287U3B3	4.3e-04	69.05	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]

BLAST of CmUC01G012500 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	2.0e-06	67.65	photosystem II reaction center protein A	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G012500.1	CmUC01G012500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009536	plastid
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding