Sed0002696 (gene) Chayote v1

Overview


Name	Sed0002696
Type	gene
Organism	Sechium edule (Chayote v1)
Description	thylakoid lumenal 17.9 kDa protein, chloroplastic
Location	LG08: 37360035 .. 37362656 (+)
RNA-Seq Expression	Sed0002696
Synteny	Sed0002696

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGTTTCACCAAAACGAAATAAGAGAATAAAAAGTCGTCGACAGCAGGGTTCGAACCTGCGCGGGCGAAGCCCAACAGATTTCAAATCTGTCTCCTTAACCACTCGGACATATCGACGCTTTTGTTTGTAACTTAAATTTTACATTATATTATGGTATTTACATTTGAGTTAATTTACTTAGATAAGCTAGACGATTGAAGACAGCACGAAACATGAGTTCGCTTCAATTTCGACCTCCACTGGTTTCGCCATGGAAGAAGATGAACCAGCACCAATCTCCGCCTTCAATGGCGGCTCTTCAAAATCCAACCCCAAAACCCATTTTCCTCCCTCATCTGCTTTCCTTCGCGCTCTCCATAACCCTAACTTCGCCATTTCCATCTCTCGCAATCCCTTCTCTCAACTCCCCCTCTTCTCCCCTTTCTCCCACCACTCCATTTTCCCAATCCAAGGACTTGATTACGGGACTTGAAAACGGGTACGCTCTTCATTAATCCCTTTCATTCCTCTGAGAATTGTAATTTCTACTGTTTCTGAACTGCTGTAATTTTGAATCGGTTTATGAATCGAATCGGTTGCAATGTAGCTTAGTGTTATCTTTGATGCTGTAGGAAAATTATGCCCTGCCCATCCACCAATCCGTCTTGTGTTTCTACAAACCCTAAATCCTCGTCCTTTGCGTTCTCTTTGAGCATTCCTGAAAGATTTTCTGGGAATCCAATTCAGGTTTTTATGACTTGCCTGAATGTTTTTTCAAGATGTTTGGTTGTTTTTTTTCTTCATGTTTCTGCTTTGCTTAATTTATTTGCAGAAGCTGCAGGAAGTGATACTCCAAACGCAGAGGAATGCTAAAATTCAAATGGTTGAAGATACCCCATATGGTAATTTCACTGATTTGAACTTAACTTTCCAATAGTATGTTTGAACTTTACATTACAAACTGATGTGTACCCCTCATTATGATATGAAGTGCTGAGAATAGATATGAGAAATTGAAAATGGATTCTGTTACCCATTGGATTAACCTTTTGAATTATATAGGTCCCGTTTGATAACTATTTGGTTTTTTGTTTTTGGTTTGTGAAATTTAAGCTTATTTCTACTCAAATTTCCTATCATGTGCTTCATCTTTCCTATAATGTATCCATATTTCCTTAAGAAAGTAAGTGAATACTAACCAAATTTCAAAAACAAACTTTTGGAAGCTACTTTTTTTTGTTTCCAAATTTTGGTTTTGTTTATTAAAATATAGTTAAGATGTAGATATTCAAATAAGGAAAAAGGTATAGTAATGTAGCTATTGTAGGCTTAAATTTCATAAACAAAAAACCAAAAACAAAATAGTTATCAAACGGGGCCATTGTGCTTTGACATAAAAACAAGTAATCCTTAAACTTTCAGAGTTGTTGTCTCATAGGTCTTAACCACAAAAAGTGCTTGAGCTAAACTCTTTTTTCTTTTATAATATATTGATGAGTGTTTAAGCCAACTTGCGGTCTGCTCGAACAATCGATTGACTACTATATTTGGTTGACAAGGGATATGAGAAGTCTATTACAATTTAGAAGGAAACAAAATACAAGATAAACCTAGGTGAAAGACACCTAAAACCTCTTTCTTGAGAATACTGTCTTGAGCCCAAATACTAAAATGACCATAATATTTGATATCTTTTCCCATACCCAACCCCTCTATTTCTAACTGAATATCTAACAAACTCTTTTGGGTATTTACTAAAACCCAGGTAGCAACCATCGTAGGTTGAAAGCTTGAACTCATTCCTTTGTAGTTACCAAAGACGTTTTTGACCGCTAGGTGAAGTTACGATGGTTGTCCCGATTTGAACTCTAGAACTTTCAATTTTGTGTTTAGTAGGTTTATGAACTTAAAAGTCTCACGAAAATGATAGTTCAAATTACTTGTTTTATAGACACTTTTCAAGTTTAGGGATCACTTTTTTAATGAACCTGCTAGATATTGTAGTATGTTTCAAAGTTCATAACCAAACTTATAATTTAACTTGTCCTTAGTTCATATCCTATTATCCTTAAATTATCACTTTCTCTCATCTTCATACCATTTTTTTTCATAGAAAACATAAACTTTTCATTGATGTATAAAAAAAGTACAAAAGGTCCTACTGAAACCAATTTTCATACCATTCAGCTAACGTAATAGATTTCATGTTAATATCTCGAGACAGCGCTCATGAGAAGAGTTTGTATATTCCTTATACAAGAACATACGTTCATGATTATCACAGGTCAGTATTTAGCAGCTGAGGTTGACGGGAACTTCGGGCGAGATGTGATCGAGTTCTTGGTGAAAGGAGATGTGGCTGCTTACAGAATTATGGCAACAAAAGTGACTTATGTGTACCCGTTCACAACTGCATTAGGGGACTCCAAAGGACAGGAACAACGAATGAAAAAGATCATAGACGAGTTGGATTGGTATTCTCCAACCTTTGATTCTTTGGTTGACTAATACAAATCCCGTTTCTTCTGTGTTCTTTATTTTCTTCCTATTCATTTCTAATTTTCAGCTGCAAATATTTTTGCCTCATATTGAAAATATTATTTCAATGTCTATGTTTATATATCAATAATTATTCTTCTT

mRNA sequence

TAAGGTTTCACCAAAACGAAATAAGAGAATAAAAAGTCGTCGACAGCAGGGTTCGAACCTGCGCGGGCGAAGCCCAACAGATTTCAAATCTGTCTCCTTAACCACTCGGACATATCGACGCTTTTGTTTGTAACTTAAATTTTACATTATATTATGGTATTTACATTTGAGTTAATTTACTTAGATAAGCTAGACGATTGAAGACAGCACGAAACATGAGTTCGCTTCAATTTCGACCTCCACTGGTTTCGCCATGGAAGAAGATGAACCAGCACCAATCTCCGCCTTCAATGGCGGCTCTTCAAAATCCAACCCCAAAACCCATTTTCCTCCCTCATCTGCTTTCCTTCGCGCTCTCCATAACCCTAACTTCGCCATTTCCATCTCTCGCAATCCCTTCTCTCAACTCCCCCTCTTCTCCCCTTTCTCCCACCACTCCATTTTCCCAATCCAAGGACTTGATTACGGGACTTGAAAACGGGAAAATTATGCCCTGCCCATCCACCAATCCGTCTTGTGTTTCTACAAACCCTAAATCCTCGTCCTTTGCGTTCTCTTTGAGCATTCCTGAAAGATTTTCTGGGAATCCAATTCAGAAGCTGCAGGAAGTGATACTCCAAACGCAGAGGAATGCTAAAATTCAAATGGTTGAAGATACCCCATATGGTCAGTATTTAGCAGCTGAGGTTGACGGGAACTTCGGGCGAGATGTGATCGAGTTCTTGGTGAAAGGAGATGTGGCTGCTTACAGAATTATGGCAACAAAAGTGACTTATGTGTACCCGTTCACAACTGCATTAGGGGACTCCAAAGGACAGGAACAACGAATGAAAAAGATCATAGACGAGTTGGATTGGTATTCTCCAACCTTTGATTCTTTGGTTGACTAATACAAATCCCGTTTCTTCTGTGTTCTTTATTTTCTTCCTATTCATTTCTAATTTTCAGCTGCAAATATTTTTGCCTCATATTGAAAATATTATTTCAATGTCTATGTTTATATATCAATAATTATTCTTCTT

Coding sequence (CDS)

ATGAGTTCGCTTCAATTTCGACCTCCACTGGTTTCGCCATGGAAGAAGATGAACCAGCACCAATCTCCGCCTTCAATGGCGGCTCTTCAAAATCCAACCCCAAAACCCATTTTCCTCCCTCATCTGCTTTCCTTCGCGCTCTCCATAACCCTAACTTCGCCATTTCCATCTCTCGCAATCCCTTCTCTCAACTCCCCCTCTTCTCCCCTTTCTCCCACCACTCCATTTTCCCAATCCAAGGACTTGATTACGGGACTTGAAAACGGGAAAATTATGCCCTGCCCATCCACCAATCCGTCTTGTGTTTCTACAAACCCTAAATCCTCGTCCTTTGCGTTCTCTTTGAGCATTCCTGAAAGATTTTCTGGGAATCCAATTCAGAAGCTGCAGGAAGTGATACTCCAAACGCAGAGGAATGCTAAAATTCAAATGGTTGAAGATACCCCATATGGTCAGTATTTAGCAGCTGAGGTTGACGGGAACTTCGGGCGAGATGTGATCGAGTTCTTGGTGAAAGGAGATGTGGCTGCTTACAGAATTATGGCAACAAAAGTGACTTATGTGTACCCGTTCACAACTGCATTAGGGGACTCCAAAGGACAGGAACAACGAATGAAAAAGATCATAGACGAGTTGGATTGGTATTCTCCAACCTTTGATTCTTTGGTTGACTAA

Protein sequence

MSSLQFRPPLVSPWKKMNQHQSPPSMAALQNPTPKPIFLPHLLSFALSITLTSPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSSFAFSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD

Homology

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BLAST of Sed0002696 vs. NCBI nr
Match: XP_038893869.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 382.5 bits (981), Expect = 2.5e-102
Identity = 198/230 (86.09%), Postives = 210/230 (91.30%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPW---KKMNQHQSP---PSMAALQNPTPKPIFLPHLLSFALSITLTSP 60
           MSSLQFRPPLVSPW   KK NQ+ SP   PSMAALQN   KPIFL H+LSFALSITL+SP
Sbjct: 1   MSSLQFRPPLVSPWKKKKKKNQYHSPNSFPSMAALQNSNHKPIFLSHILSFALSITLSSP 60

Query: 61  FPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSSFAFS 120
           FPSLAIPSLNS SSPLSPTTPFSQSK+L TGLENGKIMPCPSTNPSCVSTNPKSSSFAF 
Sbjct: 61  FPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFP 120

Query: 121 LSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFLVKGD 180
           L+IPE FSGNPIQKLQE IL+TQRN KIQ+VEDTPYGQYL AEVDGNFGRDVIEFLVKGD
Sbjct: 121 LNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKGD 180

Query: 181 VAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           VAAYRIMATKVTYVYPFTTALGDSKGQE+RM+KIID+L+WYSPTFDS+ D
Sbjct: 181 VAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLNWYSPTFDSMDD 230

[Close]

BLAST of Sed0002696 vs. NCBI nr
Match: XP_022955221.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 380.6 bits (976), Expect = 9.6e-102
Identity = 196/234 (83.76%), Postives = 207/234 (88.46%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKMNQHQ----------SPPSMAALQNPTPKPIFLPHLLSFALSIT 60
           MSSL FRP LVSPWKK  ++           SPPSMAAL NP  KPIF+ HLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPS NS SSPLSPTTPFSQSKDL  GLENGKI PCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFL 180
           FAFSLSIPE F+GNPIQKLQEVIL+TQRNAKIQMVEDTPYGQY+ AEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           V+GDVAAYRIMA KVTYVYPFTTALGDSKGQE+RMKKII+ELDWYSPTF+S+VD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of Sed0002696 vs. NCBI nr
Match: KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.1 bits (967), Expect = 1.1e-100
Identity = 196/234 (83.76%), Postives = 207/234 (88.46%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPW-KKMNQHQ---------SPPSMAALQNPTPKPIFLPHLLSFALSIT 60
           MSSL FRP LVSPW KK N +Q         SPPSMAAL NP  KPIF+ HLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPS NS SSPLSPTTPFSQSKDL  GLENGKI PCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFL 180
           FAF LSIPE ++GNPIQKLQEVIL+TQRNAKIQMVEDTPYGQY+ AEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           V+GDVAAYRIMA KVTYVYPFTTALGDSKGQE+RMKKII+ELDWYSPTF+S+VD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of Sed0002696 vs. NCBI nr
Match: XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA0055338.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa] >TYJ99264.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 376.7 bits (966), Expect = 1.4e-100
Identity = 197/233 (84.55%), Postives = 208/233 (89.27%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKK------MNQHQSP---PSMAALQNPTPKPIFLPHLLSFALSITL 60
           MSSLQFRP LVSPWKK       NQ+ SP   PSM+ALQN   KPIFL HLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  TSPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           TSPFPS+AIPSLNS SSPLSPTTPFSQSK+L TGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFLV 180
           AF L+IP+ FSGNPIQKLQE IL+TQRN KIQMVEDTPYGQYL AEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQE+RM+KIID+L WYSPTFDS+ D
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

[Close]

BLAST of Sed0002696 vs. NCBI nr
Match: XP_022994453.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 376.3 bits (965), Expect = 1.8e-100
Identity = 194/234 (82.91%), Postives = 204/234 (87.18%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKMNQHQ----------SPPSMAALQNPTPKPIFLPHLLSFALSIT 60
           MSSL FRP LVSPWKK N +           SPPSMAAL NP  KPIF+ HLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPS NS SSPLSPTTPFSQSKD   GLENGKI PCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFL 180
           FAF LSIPE F+GNPIQKLQEVIL+TQRNAKIQMVEDTPYGQY+ AEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           V+GDVAAYRIMA KVTYVYPFTTALGDSKGQE+RMKKII+ELDWYSPTF+S+VD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of Sed0002696 vs. ExPASy Swiss-Prot
Match: Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-64
Identity = 136/224 (60.71%), Postives = 170/224 (75.89%), Query Frame = 0


Query: 1   MSSLQ-FRPPLVSPWKKMNQHQSPPSMAALQNPTPKPIFLPHLLSFALSITLTSPFPSLA 60
           ++SLQ   PP     K +   QSP     L + +P    LP L+SFAL+I+LTS  P+LA
Sbjct: 4   VASLQLILPPRPRSTKLLCSLQSPKQEQELSSTSPPISLLPKLISFALAISLTSFSPALA 63

Query: 61  IPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSSFAFSLSIPE 120
           IPSL+S S PL  TTPF+QSK + TGL NGKI PCPSTNP CVSTNP SSSF+F L+IPE
Sbjct: 64  IPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPE 123

Query: 121 RFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVD-GNFGRDVIEFLVKGDVAAY 180
             + +PI+KL+E I+ TQ+N K  ++EDTPYG+Y+ AEV+ G F RDV+EFLVK DV AY
Sbjct: 124 TDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAY 183

Query: 181 RIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSL 223
           R MATKVT+VYPFTTA GDSKGQE+R+KK+ID+L WY+PTF+S+
Sbjct: 184 RCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESM 224

[Close]

BLAST of Sed0002696 vs. ExPASy TrEMBL
Match: A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.6e-102
Identity = 196/234 (83.76%), Postives = 207/234 (88.46%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKMNQHQ----------SPPSMAALQNPTPKPIFLPHLLSFALSIT 60
           MSSL FRP LVSPWKK  ++           SPPSMAAL NP  KPIF+ HLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPS NS SSPLSPTTPFSQSKDL  GLENGKI PCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFL 180
           FAFSLSIPE F+GNPIQKLQEVIL+TQRNAKIQMVEDTPYGQY+ AEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           V+GDVAAYRIMA KVTYVYPFTTALGDSKGQE+RMKKII+ELDWYSPTF+S+VD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of Sed0002696 vs. ExPASy TrEMBL
Match: A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 6.7e-101
Identity = 197/233 (84.55%), Postives = 208/233 (89.27%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKK------MNQHQSP---PSMAALQNPTPKPIFLPHLLSFALSITL 60
           MSSLQFRP LVSPWKK       NQ+ SP   PSM+ALQN   KPIFL HLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  TSPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           TSPFPS+AIPSLNS SSPLSPTTPFSQSK+L TGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFLV 180
           AF L+IP+ FSGNPIQKLQE IL+TQRN KIQMVEDTPYGQYL AEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQE+RM+KIID+L WYSPTFDS+ D
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

[Close]

BLAST of Sed0002696 vs. ExPASy TrEMBL
Match: A0A1S3AZP3 (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 6.7e-101
Identity = 197/233 (84.55%), Postives = 208/233 (89.27%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKK------MNQHQSP---PSMAALQNPTPKPIFLPHLLSFALSITL 60
           MSSLQFRP LVSPWKK       NQ+ SP   PSM+ALQN   KPIFL HLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  TSPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           TSPFPS+AIPSLNS SSPLSPTTPFSQSK+L TGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFLV 180
           AF L+IP+ FSGNPIQKLQE IL+TQRN KIQMVEDTPYGQYL AEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQE+RM+KIID+L WYSPTFDS+ D
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

[Close]

BLAST of Sed0002696 vs. ExPASy TrEMBL
Match: A0A6J1K581 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 8.7e-101
Identity = 194/234 (82.91%), Postives = 204/234 (87.18%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKMNQHQ----------SPPSMAALQNPTPKPIFLPHLLSFALSIT 60
           MSSL FRP LVSPWKK N +           SPPSMAAL NP  KPIF+ HLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPS NS SSPLSPTTPFSQSKD   GLENGKI PCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFL 180
           FAF LSIPE F+GNPIQKLQEVIL+TQRNAKIQMVEDTPYGQY+ AEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           V+GDVAAYRIMA KVTYVYPFTTALGDSKGQE+RMKKII+ELDWYSPTF+S+VD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of Sed0002696 vs. ExPASy TrEMBL
Match: A0A0A0LRK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 4.3e-100
Identity = 193/232 (83.19%), Postives = 207/232 (89.22%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKK-----MNQHQSP---PSMAALQNPTPKPIFLPHLLSFALSITLT 60
           MSSLQFRPPLVSPWKK      NQ+ SP   PSM+ LQN   KPIFL HLLSFALSITL+
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSLAIPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
           SPFPS+AIPSLNS SSPLSPTTPFSQSK+L TGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FSLSIPERFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVDGNFGRDVIEFLVK 180
           F L+IP+ FSGNPIQKLQE IL+TQRN KIQ+VEDTPYGQYL AEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSLVD 225
           GDVAAYRIMATKVTYVYPFTTALGDSKGQE+RM+KIID+L WYSPTFDS+ D
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

[Close]

BLAST of Sed0002696 vs. TAIR 10
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )

HSP 1 Score: 247.7 bits (631), Expect = 9.0e-66
Identity = 136/224 (60.71%), Postives = 170/224 (75.89%), Query Frame = 0


Query: 1   MSSLQ-FRPPLVSPWKKMNQHQSPPSMAALQNPTPKPIFLPHLLSFALSITLTSPFPSLA 60
           ++SLQ   PP     K +   QSP     L + +P    LP L+SFAL+I+LTS  P+LA
Sbjct: 4   VASLQLILPPRPRSTKLLCSLQSPKQEQELSSTSPPISLLPKLISFALAISLTSFSPALA 63

Query: 61  IPSLNSPSSPLSPTTPFSQSKDLITGLENGKIMPCPSTNPSCVSTNPKSSSFAFSLSIPE 120
           IPSL+S S PL  TTPF+QSK + TGL NGKI PCPSTNP CVSTNP SSSF+F L+IPE
Sbjct: 64  IPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPE 123

Query: 121 RFSGNPIQKLQEVILQTQRNAKIQMVEDTPYGQYLAAEVD-GNFGRDVIEFLVKGDVAAY 180
             + +PI+KL+E I+ TQ+N K  ++EDTPYG+Y+ AEV+ G F RDV+EFLVK DV AY
Sbjct: 124 TDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAY 183

Query: 181 RIMATKVTYVYPFTTALGDSKGQEQRMKKIIDELDWYSPTFDSL 223
           R MATKVT+VYPFTTA GDSKGQE+R+KK+ID+L WY+PTF+S+
Sbjct: 184 RCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESM 224

The following BLAST results are available for this feature:

BLAST of Sed0002696 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893869.1	2.5e-102	86.09	thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_022955221.1	9.6e-102	83.76	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata...	[more]
KAG7012320.1	1.1e-100	83.76	Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_008439847.1	1.4e-100	84.55	PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA...	[more]
XP_022994453.1	1.8e-100	82.91	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima]	[more]

BLAST of Sed0002696 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SW33	1.3e-64	60.71	Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Sed0002696 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GT70	4.6e-102	83.76	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha...	[more]
A0A5A7UK02	6.7e-101	84.55	Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AZP3	6.7e-101	84.55	thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1K581	8.7e-101	82.91	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima...	[more]
A0A0A0LRK9	4.3e-100	83.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1	[more]

BLAST of Sed0002696 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24930.1	9.0e-66	60.71	thylakoid lumenal 17.9 kDa protein, chloroplast	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
IPR037734	Thylakoid lumenal 17.9kDa protein	PANTHER	PTHR36783	THYLAKOID LUMENAL 17.9 KDA PROTEIN, CHLOROPLASTIC	coord: 15..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002696.1	Sed0002696.1	mRNA
Sed0002696.2	Sed0002696.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006605	protein targeting
biological_process	GO:0071806	protein transmembrane transport
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008320	protein transmembrane transporter activity