Lsi04G000140 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G000140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	chr04: 215016 .. 215337 (+)
RNA-Seq Expression	Lsi04G000140
Synteny	Lsi04G000140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTCTTTGCACTATCTTGGAGTTGGACTGCGAATGTGAAGATTATTTTTACTAGTTTCTGATTTTTTTCCTTTTCCTTTTTCTTTTTTTTTTCTTTTTTCAAAACCAGTTTCTGACTTTTCAAGTTTACAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCAAAGCAACGGCATCACATCATTGGCCAGTACGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTGGGCGCCAAGGATCAGGGCATATCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTTTGA

mRNA sequence

ATGATGCTCTTTGCACTATCTTGGAGTTGGACTGCGAATGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCAAAGCAACGGCATCACATCATTGGCCAGTACGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTGGGCGCCAAGGATCAGGGCATATCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTTTGA

Coding sequence (CDS)

ATGATGCTCTTTGCACTATCTTGGAGTTGGACTGCGAATGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCAAAGCAACGGCATCACATCATTGGCCAGTACGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTGGGCGCCAAGGATCAGGGCATATCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTTTGA

Protein sequence

MMLFALSWSWTANVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

Homology

[Close]

BLAST of Lsi04G000140 vs. ExPASy Swiss-Prot
Match: Q9LHI0 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=At3g12260 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-20
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG ++FLKNFY SNY
Sbjct: 74  VIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDFLKNFYTSNY 133

Query: 74  F 75
           F
Sbjct: 134 F 133

[Close]

BLAST of Lsi04G000140 vs. ExPASy TrEMBL
Match: A0A6J1JDJ2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111483420 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.8e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNY
Sbjct: 72  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNFYKSNY 131

Query: 74  F 75
           F
Sbjct: 132 F 132

[Close]

BLAST of Lsi04G000140 vs. ExPASy TrEMBL
Match: A0A6J1H232 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111458871 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.8e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNY
Sbjct: 72  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNFYKSNY 131

Query: 74  F 75
           F
Sbjct: 132 F 132

[Close]

BLAST of Lsi04G000140 vs. ExPASy TrEMBL
Match: A0A5A7SUY5 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007940 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD GAKDQG+SNFLKNFY+SNY
Sbjct: 101 VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMSNFLKNFYRSNY 160

Query: 74  F 75
           F
Sbjct: 161 F 161

[Close]

BLAST of Lsi04G000140 vs. ExPASy TrEMBL
Match: A0A6J1CBT6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010212 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVG EGLVQDLG KDQGISNFLKNFYKSNY
Sbjct: 72  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGSEGLVQDLGTKDQGISNFLKNFYKSNY 131

Query: 74  F 75
           F
Sbjct: 132 F 132

[Close]

BLAST of Lsi04G000140 vs. ExPASy TrEMBL
Match: A0A1S3BH79 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489526 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD GAKDQG+SNFLKNFY+SNY
Sbjct: 72  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMSNFLKNFYRSNY 131

Query: 74  F 75
           F
Sbjct: 132 F 132

[Close]

BLAST of Lsi04G000140 vs. NCBI nr
Match: XP_038892169.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 2.8e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY
Sbjct: 72  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 131

Query: 74  F 75
           F
Sbjct: 132 F 132

[Close]

BLAST of Lsi04G000140 vs. NCBI nr
Match: XP_022957489.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNY
Sbjct: 72  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNFYKSNY 131

Query: 74  F 75
           F
Sbjct: 132 F 132

[Close]

BLAST of Lsi04G000140 vs. NCBI nr
Match: XP_023552714.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNY
Sbjct: 72  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNFYKSNY 131

Query: 74  F 75
           F
Sbjct: 132 F 132

[Close]

BLAST of Lsi04G000140 vs. NCBI nr
Match: XP_022985413.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima])

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNY
Sbjct: 72  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNFYKSNY 131

Query: 74  F 75
           F
Sbjct: 132 F 132

[Close]

BLAST of Lsi04G000140 vs. NCBI nr
Match: KAG6601118.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031916.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNY
Sbjct: 72  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNFYKSNY 131

Query: 74  F 75
           F
Sbjct: 132 F 132

[Close]

BLAST of Lsi04G000140 vs. TAIR 10
Match: AT3G12260.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 97.4 bits (241), Expect = 5.0e-21
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 14  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNY 73
           VID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG ++FLKNFY SNY
Sbjct: 74  VIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDFLKNFYTSNY 133

Query: 74  F 75
           F
Sbjct: 134 F 133

The following BLAST results are available for this feature:

BLAST of Lsi04G000140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHI0	7.0e-20	77.05	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]

BLAST of Lsi04G000140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDJ2	6.8e-26	96.72	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita maxima...	[more]
A0A6J1H232	6.8e-26	96.72	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita moscha...	[more]
A0A5A7SUY5	2.0e-25	95.08	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 6 OS=Cucumis melo var...	[more]
A0A6J1CBT6	2.0e-25	96.72	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Momordica charan...	[more]
A0A1S3BH79	2.0e-25	95.08	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=...	[more]

BLAST of Lsi04G000140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892169.1	2.8e-26	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]	[more]
XP_022957489.1	1.4e-25	96.72	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata...	[more]
XP_023552714.1	1.4e-25	96.72	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo sub...	[more]
XP_022985413.1	1.4e-25	96.72	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima]	[more]
KAG6601118.1	1.4e-25	96.72	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, partial [Cucurbita...	[more]

BLAST of Lsi04G000140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12260.1	5.0e-21	77.05	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12964:SF3	BNAA05G26780D PROTEIN	coord: 10..74
IPR016488	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 10..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000140.1	Lsi04G000140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005747	mitochondrial respiratory chain complex I