Lcy13g015300 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g015300
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S13
LocationChr13: 37564193 .. 37565148 (+)
RNA-Seq ExpressionLcy13g015300
SyntenyLcy13g015300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTGACTTAATAGTTGTAACATAACTTATAAATGTTGATTCCTTGTAAATTTATCATTGTGTGTTTTTTTCTTCTCGCTGAAAAAGAATCCCAAATTTTTTTCTGGGAGTTAGCATTGTGCCCACCCCCCACACGTCCCCCCATATGGTAATGATGCAATGTCATTCTTTCAATGATCAAGGACACTACTCTGTTAACTCCAACAACAGTAGATCTATATTTTCATATTCTTTTCAACTTATTAGTGCTATATAGTATCCTGGCCACTTACTAGTTACTCAAATGAACACTCCTTGCAATGAACCTCTTGATTTTATATTTTATACTAACATTTATACTCTTTTCTGCAGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGGGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTTGCATTAGTTGCGTTGTTAACTTCTTCATTGAAATCAGCTTTCAGTATACTTTGCTCATAGCAGATAGGGTCCCATTGAAAATTACCAGGAAGATAAAAGAGGTTGTAAAAGATTGCTCATGTGATTGGCTAACGATGAAAATTACAGTCCTTGATTTTAGTGAAGCATGGTGACATGTTTTTTAGTGTCATCTGAGTGTCAATTCTGATGGTTATACTTGTCGAATGTCTAAGAAAATCGCAAGTTCTTCCATTGCTTGTCATTTTAACTGCTTAGAAAGGGAAGTGAATCTTTGTACTATCTATAGAAATTGATGGCTTTCCTTTGACCATTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGATGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCTCATCTACCCTTCCTCCATTGA

mRNA sequence

ATGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGGGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGATGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCTCATCTACCCTTCCTCCATTGA

Coding sequence (CDS)

ATGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGGGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGATGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCTCATCTACCCTTCCTCCATTGA

Protein sequence

MRCNHYTKSFRRINAKQTLLGNVSAYAEFLFQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHGEPHLPFLH
Homology
[Close]
BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-17
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V ENICKFAKKGLTPS+I VILRDSHGIAQV SVTGSKILRILKAHG  P +P
Sbjct: 33 VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIP 85

[Close]
BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.8e-17
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E ICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 85

[Close]
BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E+ICKFAKKGLTPS+I VILRDSHGI QVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

[Close]
BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E+ICKFAKKGLTPS+I VILRDSHGI QVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

[Close]
BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: Q56JX8 (40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E I K AKKGLTPS+I VILRDSHG+AQV+ VTG+KILRILK+ G  P LP
Sbjct: 33 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLP 85

[Close]
BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A6A6MFQ6 (Ribosomal_S13_N domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_026488 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.9e-17
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 31 FQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          FQV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 8  FQVQENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 62

[Close]
BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A1S4D890 (30S ribosomal protein S15, chloroplastic OS=Nicotiana tabacum OX=4097 GN=LOC107827027 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 31 FQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          FQV +NICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 5  FQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 59

[Close]
BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A218WH84 (Ribosomal_S13_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr017751 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-16
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 32 QVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          QV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 4  QVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 57

[Close]
BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A1U8FP47 (30S ribosomal protein S15, chloroplastic OS=Capsicum annuum OX=4072 GN=LOC107857105 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-16
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 30 LFQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          L QV +NICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 5  LLQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 60

[Close]
BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A7J9A571 (Ribosomal_S13_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_006711 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-16
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 32 QVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          QV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 26 QVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 79

[Close]
BLAST of Lcy13g015300 vs. NCBI nr
Match: KAF3778142.1 (40S ribosomal protein S13-2 [Nymphaea thermarum])

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-16
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 32 QVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHGEPHLPF 86
          +V ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  +LP+
Sbjct: 4  RVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGTSYLPY 57

[Close]
BLAST of Lcy13g015300 vs. NCBI nr
Match: KAF2311747.1 (hypothetical protein GH714_026488 [Hevea brasiliensis])

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-16
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 31 FQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          FQV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 8  FQVQENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 62

[Close]
BLAST of Lcy13g015300 vs. NCBI nr
Match: XP_016509568.1 (PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum])

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 31 FQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          FQV +NICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 5  FQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 59

[Close]
BLAST of Lcy13g015300 vs. NCBI nr
Match: XP_009596116.1 (40S ribosomal protein S13-like [Nicotiana tomentosiformis])

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 30 LFQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          +FQV +NICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 5  VFQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 60

[Close]
BLAST of Lcy13g015300 vs. NCBI nr
Match: MBA0719002.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 93.6 bits (231), Expect = 9.1e-16
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 32 QVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          QV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 26 QVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 79

[Close]
BLAST of Lcy13g015300 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 87.0 bits (214), Expect = 7.9e-18
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E+ICKFAKKGLTPS+I VILRDSHGI QVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

[Close]
BLAST of Lcy13g015300 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 87.0 bits (214), Expect = 7.9e-18
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E+ICKFAKKGLTPS+I VILRDSHGI QVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

The following BLAST results are available for this feature:
BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623022.2e-1784.9140S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P462983.8e-1784.9140S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
P592231.1e-1683.0240S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P592241.1e-1683.0240S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
Q56JX81.7e-1271.7040S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3[more]
BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A6MFQ68.9e-1787.27Ribosomal_S13_N domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714... [more]
A0A1S4D8902.0e-1685.4530S ribosomal protein S15, chloroplastic OS=Nicotiana tabacum OX=4097 GN=LOC1078... [more]
A0A218WH844.4e-1687.04Ribosomal_S13_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_P... [more]
A0A1U8FP474.4e-1683.9330S ribosomal protein S15, chloroplastic OS=Capsicum annuum OX=4072 GN=LOC107857... [more]
A0A7J9A5714.4e-1687.04Ribosomal_S13_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_0... [more]
BLAST of Lcy13g015300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3778142.11.8e-1685.1940S ribosomal protein S13-2 [Nymphaea thermarum][more]
KAF2311747.11.8e-1687.27hypothetical protein GH714_026488 [Hevea brasiliensis][more]
XP_016509568.14.1e-1685.45PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum][more]
XP_009596116.14.1e-1683.9340S ribosomal protein S13-like [Nicotiana tomentosiformis][more]
MBA0719002.19.1e-1687.04hypothetical protein [Gossypium laxum][more]
BLAST of Lcy13g015300 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60770.17.9e-1883.02Ribosomal protein S13/S15 [more]
AT4G00100.17.9e-1883.02ribosomal protein S13A [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
e-value: 0.0051
score: 13.0
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 32..60
e-value: 2.5E-9
score: 37.1
NoneNo IPR availableGENE3D4.10.860.130coord: 35..81
e-value: 1.0E-24
score: 88.0
NoneNo IPR availablePANTHERPTHR11885:SF2440S RIBOSOMAL PROTEIN S13coord: 32..82
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 32..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g015300.1Lcy13g015300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome