Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCACTCGAATTCGTGCTTCGCTTGCTCCAGTCGTGGAAGTGGCAGTGGCTGTATCGTTGCAATGGCGTTAGGTCATCGGCGGTCATGGAAAATCACGGTTCATGCCAAGATCAGTAACCTTTATATCAAGCTCAAGGCCACTGTAAAATGTCCTTCCGGGAAATTCCAACGCCTCCTTAAGCTGGACAAATTACTCATCGGAGGGGATTCAAAATCCGAATCTCGGATCCTCATTCAACAACGGAGGACTATGAGATCTCGAATACTCAGCTTCTTCAAGAAATATCTCGGGCGTCGCCGATCTAAAAGCACTTTTGGCTTCAAAATGCCGGATGCCTCGTACTCACACCCGTACCTAGCTGTTGAAACTGAATATCAATCTTGGCGTTTGGGCCGTGTGGTACGAAATTTTGTACTTGACGAGTTCGATGAATTGGAATGAGGAGTTTCAATTTACAGATTGTTGATTGATGTGCAGGAATTAAGTTGTGTGGCTGCATTTGGTGTTGGATTGGGTTATCTGCTTGCGGAATTTGGCTCCACACTGAAGAAAAACGTTGTCGTTGGCATCAATCCCAGCTTGAGTTCCTTTATATTGGTGTGCCTGGTTTTATCTGTTCTATGGTTGCACAAATGTAAGTTCCTTTGGGCAATGCTAGTCGCTGTGGTTCCTCTCTTTCTGCTAGAAATCGATAGATTTCTACAACATTTAGATTCAGATTTAGGGCAGTTTTGGTAACATTTCTTATTTATTTGTTCTCCATTTCTTTTTTTTTCCCCCCCGAAAATATTTCTTCGTTTTTAAGATCATAATAGAAAGTTTGGTAATTTTTTTCCCTTGGTCTCATTTCCTATTTTCTGATTCTTGTTTGTAACTTTCTTCTTTTCAAAATTAAAAGTAAAGTATTTAGTAAATATTTCCTGCTTATCTGTTTAAAAACCAGAATGCAACTGAAAACTATTTATTGTTTTTTCCCTTTCGAATTTAAATTTCTGAGG
mRNA sequence
TGCCACTCGAATTCGTGCTTCGCTTGCTCCAGTCGTGGAAGTGGCAGTGGCTGTATCGTTGCAATGGCGTTAGGTCATCGGCGGTCATGGAAAATCACGGTTCATGCCAAGATCAGTAACCTTTATATCAAGCTCAAGGCCACTGTAAAATGTCCTTCCGGGAAATTCCAACGCCTCCTTAAGCTGGACAAATTACTCATCGGAGGGGATTCAAAATCCGAATCTCGGATCCTCATTCAACAACGGAGGACTATGAGATCTCGAATACTCAGCTTCTTCAAGAAATATCTCGGGCGTCGCCGATCTAAAAGCACTTTTGGCTTCAAAATGCCGGATGCCTCGTACTCACACCCGTACCTAGCTGTTGAAACTGAATATCAATCTTGGCGTTTGGGCCGTGTGGAATTAAGTTGTGTGGCTGCATTTGGTGTTGGATTGGGTTATCTGCTTGCGGAATTTGGCTCCACACTGAAGAAAAACGTTGTCGTTGGCATCAATCCCAGCTTGAGTTCCTTTATATTGGTGTGCCTGGTTTTATCTGTTCTATGGTTGCACAAATGTAAGTTCCTTTGGGCAATGCTAGTCGCTGTGGTTCCTCTCTTTCTGCTAGAAATCGATAGATTTCTACAACATTTAGATTCAGATTTAGGGCAGTTTTGGTAACATTTCTTATTTATTTGTTCTCCATTTCTTTTTTTTTCCCCCCCGAAAATATTTCTTCGTTTTTAAGATCATAATAGAAAGTTTGGTAATTTTTTTCCCTTGGTCTCATTTCCTATTTTCTGATTCTTGTTTGTAACTTTCTTCTTTTCAAAATTAAAAGTAAAGTATTTAGTAAATATTTCCTGCTTATCTGTTTAAAAACCAGAATGCAACTGAAAACTATTTATTGTTTTTTCCCTTTCGAATTTAAATTTCTGAGG
Coding sequence (CDS)
ATGGCGTTAGGTCATCGGCGGTCATGGAAAATCACGGTTCATGCCAAGATCAGTAACCTTTATATCAAGCTCAAGGCCACTGTAAAATGTCCTTCCGGGAAATTCCAACGCCTCCTTAAGCTGGACAAATTACTCATCGGAGGGGATTCAAAATCCGAATCTCGGATCCTCATTCAACAACGGAGGACTATGAGATCTCGAATACTCAGCTTCTTCAAGAAATATCTCGGGCGTCGCCGATCTAAAAGCACTTTTGGCTTCAAAATGCCGGATGCCTCGTACTCACACCCGTACCTAGCTGTTGAAACTGAATATCAATCTTGGCGTTTGGGCCGTGTGGAATTAAGTTGTGTGGCTGCATTTGGTGTTGGATTGGGTTATCTGCTTGCGGAATTTGGCTCCACACTGAAGAAAAACGTTGTCGTTGGCATCAATCCCAGCTTGAGTTCCTTTATATTGGTGTGCCTGGTTTTATCTGTTCTATGGTTGCACAAATGTAAGTTCCTTTGGGCAATGCTAGTCGCTGTGGTTCCTCTCTTTCTGCTAGAAATCGATAGATTTCTACAACATTTAGATTCAGATTTAGGGCAGTTTTGGTAA
Protein sequence
MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQRRTMRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAAFGVGLGYLLAEFGSTLKKNVVVGINPSLSSFILVCLVLSVLWLHKCKFLWAMLVAVVPLFLLEIDRFLQHLDSDLGQFW
Homology
BLAST of Lcy06g023940 vs. ExPASy TrEMBL
Match:
A0A1S3B4Y8 (uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=4 SV=1)
HSP 1 Score: 167.9 bits (424), Expect = 4.2e-38
Identity = 104/195 (53.33%), Postives = 132/195 (67.69%), Query Frame = 0
Query: 1 MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQ 60
MA+GHRRS+KI+VHAKI NLYIKLKAT+K PSGKFQRLLKLDKLLI DSKSESR+L+Q+
Sbjct: 1 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
Query: 61 RRTMRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAA 120
RRT++SR+LSF KK+LGR RS K+P + E++YQSW +G
Sbjct: 61 RRTLKSRMLSFVKKHLGRCRS------KIPHS---------ESKYQSWHVGH-------Q 120
Query: 121 FGVGLGYLLAEFGSTLKKNVVV--GINPSLSSFILVCLVLSVLWLHKCKFLWA--MLVAV 180
GVG GYL+A LK + + + S SS I V L + V+WL KCK+LWA +LV +
Sbjct: 121 IGVGFGYLVA-----LKTQIGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPL 168
Query: 181 VPLFLLEIDRFLQHL 192
PL L ++D F+ L
Sbjct: 181 FPLLLFQLDTFVHLL 168
BLAST of Lcy06g023940 vs. ExPASy TrEMBL
Match:
A0A0A0LCL9 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1)
HSP 1 Score: 154.5 bits (389), Expect = 4.8e-34
Identity = 90/156 (57.69%), Postives = 111/156 (71.15%), Query Frame = 0
Query: 1 MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQ 60
MA+GHRRS+KI+V AKI NLYIKLKAT+K PSGKFQRLLKLDKLLI DSKS SRIL+Q+
Sbjct: 1 MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 60
Query: 61 RRTMRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAA 120
RRT++SR+LSF KK+LG RRSK + H E+ Y+SW +G +E CVAA
Sbjct: 61 RRTLKSRMLSFVKKHLGHRRSK-----------FPH----AESRYRSWHVGLLERRCVAA 120
Query: 121 FGVGLGYLLAEFGSTLKKNVVVGINPSLSSFILVCL 157
FGVGLGY++ + ++ + I PS SS I V L
Sbjct: 121 FGVGLGYVVVALKTQIE--LANAIGPSFSSIIWVYL 139
BLAST of Lcy06g023940 vs. ExPASy TrEMBL
Match:
A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)
HSP 1 Score: 137.1 bits (344), Expect = 7.9e-29
Identity = 78/130 (60.00%), Postives = 95/130 (73.08%), Query Frame = 0
Query: 1 MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQ 60
MA+GHRRS+KI+VHAKI NLYIKLKAT+K PSGKFQRLLKLDKLLI DSKSESR+L+Q+
Sbjct: 170 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 229
Query: 61 RRTMRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAA 120
RRT++SR+LSF KK+LGR RS K+P + E++YQ W +G
Sbjct: 230 RRTLKSRMLSFVKKHLGRCRS------KIPHS---------ESKYQYWHVGH-------Q 277
Query: 121 FGVGLGYLLA 131
GVG GYL+A
Sbjct: 290 IGVGFGYLVA 277
BLAST of Lcy06g023940 vs. ExPASy TrEMBL
Match:
A0A5D3DNQ2 (50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00230 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 3.0e-28
Identity = 77/127 (60.63%), Postives = 93/127 (73.23%), Query Frame = 0
Query: 4 GHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQRRT 63
GHRRS+KI+VHAKI NLYIKLKAT+K PSGKFQRLLKLDKLLI DSKSESR+L+Q+RRT
Sbjct: 7 GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66
Query: 64 MRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAAFGV 123
++SR+LSF KK+LGR RS K+P + E++YQSW +G GV
Sbjct: 67 LKSRMLSFVKKHLGRCRS------KIPHS---------ESKYQSWHVGH-------QIGV 111
Query: 124 GLGYLLA 131
G GYL+A
Sbjct: 127 GFGYLVA 111
BLAST of Lcy06g023940 vs. ExPASy TrEMBL
Match:
A0A1R3KWS9 (Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_00483 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0
Query: 1 MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQR---LLKLDKLLIGGDSKSESRIL 60
M +G +R WK ++ AK KLKAT P+ KF R LL+L+K +I KS S I
Sbjct: 1 MQVGKQRPWKWSIQAKAEKFNFKLKATNILPTWKFDRFSLLLRLNKFIINLQLKSGSTIS 60
Query: 61 I--QQRRTMRSRILSFFKKYLGRRRSKS 84
+ QQ+RT++SR L F +K RR K+
Sbjct: 61 VSAQQKRTLKSRFLGFLEKIRIRRARKA 88
BLAST of Lcy06g023940 vs. NCBI nr
Match:
KAG7027863.1 (hypothetical protein SDJN02_09040 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 258.8 bits (660), Expect = 3.7e-65
Identity = 144/201 (71.64%), Postives = 161/201 (80.10%), Query Frame = 0
Query: 1 MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQ 60
MALGHRRSWKITVHAK++NLYIK KATVK PSGKF+ LL LDKLL G DSKSESRIL+QQ
Sbjct: 1 MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQ 60
Query: 61 RRTMRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAA 120
RT++SRI+SF KK+ RRRSK+ GFKMPD PYL ETEYQSWRL R E SC A
Sbjct: 61 HRTLKSRIISFVKKHFRRRRSKTGVGFKMPD-----PYLVDETEYQSWRLSRAESSCAAV 120
Query: 121 FGVGLGYLLAEFG--STLKKNVVVGINPSLSSFILVCLVLSVLWLHKCKFLWAMLVAVVP 180
FGVGLGYLLAEFG +T+K+ VGI PSLSSF+LVCLVL VL HK KFLWAML+AV+
Sbjct: 121 FGVGLGYLLAEFGASATVKR---VGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLS 180
Query: 181 LFLLEIDRFLQHLDSDLGQFW 200
L LLEIDRFL+ + DL QFW
Sbjct: 181 LLLLEIDRFLELV--DLEQFW 191
BLAST of Lcy06g023940 vs. NCBI nr
Match:
XP_023540743.1 (uncharacterized protein LOC111801019 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 258.5 bits (659), Expect = 4.9e-65
Identity = 141/199 (70.85%), Postives = 160/199 (80.40%), Query Frame = 0
Query: 1 MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQ 60
MALGHRRSWKITVHAK+++LYIK KATVK PSGKF+ LL LDKLL+G DSKSESRIL+QQ
Sbjct: 1 MALGHRRSWKITVHAKVNDLYIKFKATVKRPSGKFRSLLNLDKLLVGLDSKSESRILVQQ 60
Query: 61 RRTMRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAA 120
RT++SRI+SF KK+ RRRSK+ GFKMPD PYL ETEYQSWRLGR E SC A
Sbjct: 61 HRTLKSRIISFVKKHFRRRRSKTGVGFKMPD-----PYLVDETEYQSWRLGRAESSCAAV 120
Query: 121 FGVGLGYLLAEFGSTLKKNVVVGINPSLSSFILVCLVLSVLWLHKCKFLWAMLVAVVPLF 180
FGVGLGYLLAEFG++ VGI PSLSSF+LVC+VL VL HK KFLWAML+AV+ L
Sbjct: 121 FGVGLGYLLAEFGASAAVK-RVGIIPSLSSFLLVCVVLFVLLFHKSKFLWAMLMAVLSLL 180
Query: 181 LLEIDRFLQHLDSDLGQFW 200
LLEIDRFL+ + DL QFW
Sbjct: 181 LLEIDRFLELI--DLEQFW 191
BLAST of Lcy06g023940 vs. NCBI nr
Match:
KAG6596309.1 (hypothetical protein SDJN03_09489, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 258.5 bits (659), Expect = 4.9e-65
Identity = 143/201 (71.14%), Postives = 161/201 (80.10%), Query Frame = 0
Query: 1 MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQ 60
MALGHRRSWKITVHAK++NLYIK KATVK PSGKF+ LL LDKLL G DSKSESRIL+QQ
Sbjct: 1 MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQ 60
Query: 61 RRTMRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAA 120
RT++SRI+SF KK+ RRRSK+ GFKMPD PYL ETEYQSWRL R E SC A
Sbjct: 61 HRTLKSRIISFVKKHFRRRRSKTGVGFKMPD-----PYLVDETEYQSWRLSRAESSCAAV 120
Query: 121 FGVGLGYLLAEFG--STLKKNVVVGINPSLSSFILVCLVLSVLWLHKCKFLWAMLVAVVP 180
FGVGLGYLLAEFG +T+++ VGI PSLSSF+LVCLVL VL HK KFLWAML+AV+
Sbjct: 121 FGVGLGYLLAEFGASATVRR---VGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLIAVLS 180
Query: 181 LFLLEIDRFLQHLDSDLGQFW 200
L LLEIDRFL+ + DL QFW
Sbjct: 181 LLLLEIDRFLELV--DLEQFW 191
BLAST of Lcy06g023940 vs. NCBI nr
Match:
XP_038906422.1 (uncharacterized protein LOC120092221 [Benincasa hispida])
HSP 1 Score: 195.3 bits (495), Expect = 5.1e-46
Identity = 119/197 (60.41%), Postives = 145/197 (73.60%), Query Frame = 0
Query: 1 MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQ 60
MALG RRS+KITVHAKI NLYIKLKAT+K PSGK QRLLKLDKLLIG DSKSES IL+Q+
Sbjct: 42 MALGFRRSFKITVHAKICNLYIKLKATLKPPSGKLQRLLKLDKLLIGADSKSESWILVQR 101
Query: 61 RRTMRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAA 120
RRT++SR+LSF KK+LG RS KMP A E+E QSW +GR+EL CVA
Sbjct: 102 RRTLKSRMLSFVKKHLGCGRS------KMPHA---------ESENQSWDVGRMELRCVAF 161
Query: 121 FGVGLGYLLAEFGSTLKKNVVVGINPSLSS--FILVCLVLSVLWLHKCK--FLWAM--LV 180
FGVGLGYLLA + I+PS SS ++ +CL+L VLWLHKCK +LWA+ L+
Sbjct: 162 FGVGLGYLLA---LNTHIGLTNAIHPSFSSTIWVCLCLLLFVLWLHKCKYLYLWAILFLI 220
Query: 181 AVVPLFLLEIDRFLQHL 192
A++PLFLL++D+F+ L
Sbjct: 222 ALLPLFLLQLDKFVHLL 220
BLAST of Lcy06g023940 vs. NCBI nr
Match:
KAE8650972.1 (hypothetical protein Csa_002588 [Cucumis sativus])
HSP 1 Score: 185.3 bits (469), Expect = 5.2e-43
Identity = 108/193 (55.96%), Postives = 136/193 (70.47%), Query Frame = 0
Query: 1 MALGHRRSWKITVHAKISNLYIKLKATVKCPSGKFQRLLKLDKLLIGGDSKSESRILIQQ 60
MA+GHRRS+KI+V AKI NLYIKLKAT+K PSGKFQRLLKLDKLLI DSKS SRIL+Q+
Sbjct: 3 MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 62
Query: 61 RRTMRSRILSFFKKYLGRRRSKSTFGFKMPDASYSHPYLAVETEYQSWRLGRVELSCVAA 120
RRT++SR+LSF KK+LG RRSK + H E+ Y+SW +G +E CVAA
Sbjct: 63 RRTLKSRMLSFVKKHLGHRRSK-----------FPH----AESRYRSWHVGLLERRCVAA 122
Query: 121 FGVGLGYLLAEFGSTLKKNVVVGINPSLSSFILVCLVLSVLWLHKCKFLWAM--LVAVVP 180
FGVGLGY++ + ++ + I PS SS I V L + VLWL KCK+LWAM L+ + P
Sbjct: 123 FGVGLGYVVVALKTQIE--LANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFP 178
Query: 181 LFLLEIDRFLQHL 192
L L ++D F+ L
Sbjct: 183 LLLFQLDTFVHLL 178
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3B4Y8 | 4.2e-38 | 53.33 | uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=... | [more] |
A0A0A0LCL9 | 4.8e-34 | 57.69 | 50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1 | [more] |
A0A5A7TM08 | 7.9e-29 | 60.00 | RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3DNQ2 | 3.0e-28 | 60.63 | 50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
A0A1R3KWS9 | 1.8e-04 | 42.05 | Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_... | [more] |
Match Name | E-value | Identity | Description | |
KAG7027863.1 | 3.7e-65 | 71.64 | hypothetical protein SDJN02_09040 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_023540743.1 | 4.9e-65 | 70.85 | uncharacterized protein LOC111801019 [Cucurbita pepo subsp. pepo] | [more] |
KAG6596309.1 | 4.9e-65 | 71.14 | hypothetical protein SDJN03_09489, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_038906422.1 | 5.1e-46 | 60.41 | uncharacterized protein LOC120092221 [Benincasa hispida] | [more] |
KAE8650972.1 | 5.2e-43 | 55.96 | hypothetical protein Csa_002588 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |