Lcy06g015970 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g015970
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	PAMP-induced secreted peptide 2
Location	Chr06: 35808390 .. 35808851 (+)
RNA-Seq Expression	Lcy06g015970
Synteny	Lcy06g015970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTCGTTTAGTGTTGATTCTGTTGGCATTATGATGATGAAGATTTTGAGCTTCGTTTTGATTTTTTCAATGATGTGTAATGAAAGTTTACTTGGAATTGTTGAAGCAAGGCCTCTCCATATGGACAGCGCAGTAGCTACAAATGATTTCTTGGCGGGATTATCTCTAGGAGCCATCAAGCAGTCTGGTCCAAGCCCCGGTGATGGCCACAAGTTCACCGATGTCGATACTCTTGGTGGTATCAAGGACTCCGGCCCGAACCCTGGCATCGGCCACAGCCTAATCATCGACCAACGCCCTTGACAACTCTAACTCCATGCATGCAAAACTATAGATTATACTACGACAATGTGGGAGCTGTGAGAATTCAAAAATTCGTAGAAAAATATTGTCAATATCTTAAACATTGATGACTAGGTCTATCAATAGATATTTATTTGTTTTTGTATCAA

mRNA sequence

CTCTCTCTCTCTCTCGTTTAGTGTTGATTCTGTTGGCATTATGATGATGAAGATTTTGAGCTTCGTTTTGATTTTTTCAATGATGTGTAATGAAAGTTTACTTGGAATTGTTGAAGCAAGGCCTCTCCATATGGACAGCGCAGTAGCTACAAATGATTTCTTGGCGGGATTATCTCTAGGAGCCATCAAGCAGTCTGGTCCAAGCCCCGGTGATGGCCACAAGTTCACCGATGTCGATACTCTTGGTGGTATCAAGGACTCCGGCCCGAACCCTGGCATCGGCCACAGCCTAATCATCGACCAACGCCCTTGACAACTCTAACTCCATGCATGCAAAACTATAGATTATACTACGACAATGTGGGAGCTGTGAGAATTCAAAAATTCGTAGAAAAATATTGTCAATATCTTAAACATTGATGACTAGGTCTATCAATAGATATTTATTTGTTTTTGTATCAA

Coding sequence (CDS)

ATGATGATGAAGATTTTGAGCTTCGTTTTGATTTTTTCAATGATGTGTAATGAAAGTTTACTTGGAATTGTTGAAGCAAGGCCTCTCCATATGGACAGCGCAGTAGCTACAAATGATTTCTTGGCGGGATTATCTCTAGGAGCCATCAAGCAGTCTGGTCCAAGCCCCGGTGATGGCCACAAGTTCACCGATGTCGATACTCTTGGTGGTATCAAGGACTCCGGCCCGAACCCTGGCATCGGCCACAGCCTAATCATCGACCAACGCCCTTGA

Protein sequence

MMMKILSFVLIFSMMCNESLLGIVEARPLHMDSAVATNDFLAGLSLGAIKQSGPSPGDGHKFTDVDTLGGIKDSGPNPGIGHSLIIDQRP

Homology

[Close]

BLAST of Lcy06g015970 vs. ExPASy Swiss-Prot
Match: F4JRC5 (PAMP-induced secreted peptide 2 OS=Arabidopsis thaliana OX=3702 GN=PIP2 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 1  MMMKILSFVLIFSMMCNESLLGIVEARPLHMDSAVATNDFLAGLSLGAIKQSGPSPGDGH 60
          ++  IL F+LI S++     LG+ +     + S         GLSLG+IK SGPSPG+GH
Sbjct: 7  VLSSILFFMLIGSVLVESRPLGLTKTEEKFVAS------LFDGLSLGSIKDSGPSPGEGH 66

Query: 61 KFTD-VDTLGGIKDSGPNP-GIGH 83
          K  D  DT   +K SGP+P G GH
Sbjct: 67 KVVDRKDTFRFVKHSGPSPSGPGH 84

[Close]

BLAST of Lcy06g015970 vs. ExPASy TrEMBL
Match: A0A0A0KIE2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491710 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 6  LSFVLIFSMMCNESLLGIVEARPLHM------DSAVATNDFLAGLSLGAIKQSGPSP-GD 65
          + F+L+ +++ N  L+ + +ARPL +       +A    DF  GLSLGAIKQSGPS  GD
Sbjct: 9  IGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGD 68

Query: 66 GHKFTDVDTLGGIKDSGPNPGIGH 83
          GHKF + DTLGGIKDSGP PG GH
Sbjct: 69 GHKFVNYDTLGGIKDSGPAPGDGH 92

[Close]

BLAST of Lcy06g015970 vs. ExPASy TrEMBL
Match: A0A059AZU8 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02229 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.7e-13
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 4  KILSFVLIFSMMCNESLLGIVEARPLHM-----DSAVATNDFLAGLSLGAIKQSGPSPGD 63
          ++L  +L+ +M+C  ++    EARP ++        VA   F  GLSLGAIKQ+GPSPG+
Sbjct: 6  RVLHILLVLAMLC--AVFVANEARPFNVMETKAPVGVACGGFFDGLSLGAIKQAGPSPGE 65

Query: 64 GHKFTDVDTLGGIKDSGPNPGIGH 83
          GHKFT+ +TLGGIKDSGP+PG GH
Sbjct: 66 GHKFTNSETLGGIKDSGPSPGEGH 87

[Close]

BLAST of Lcy06g015970 vs. ExPASy TrEMBL
Match: A0A5D3CLN9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004490 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 2  MMKI-LSFVLIFSMMCNESLLGIVEARPLHM----DSAVATNDFLAGLSLGAIKQSGPSP 61
          M KI +  +L+ +++ N  L+ + EARPL +     +A    DF  GLSLGAIKQSGPS 
Sbjct: 1  MSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIAEDFFEGLSLGAIKQSGPSA 60

Query: 62 -GDGHKFTDVDTLGGIKDSGPNPGIGHS 84
           GDGHKF + DT GG+KDSGP PG GHS
Sbjct: 61 GGDGHKFVNYDTFGGMKDSGPTPGDGHS 88

[Close]

BLAST of Lcy06g015970 vs. ExPASy TrEMBL
Match: A0A5B7BY66 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_042998 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.0e-13
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 3  MKILSFVLIFSMMCNESLLGIVEARPL-----HMDSAVATNDFLAGLSLGAIKQSGPSPG 62
          ++ LSF+ I  ++C  S+    E RP      H  S   T  F  GLSLGA+K SGPSPG
Sbjct: 13 LESLSFLFILLLLC--SIFYATEGRPFNILKSHSSSGGCTGGFFDGLSLGAVKNSGPSPG 72

Query: 63 DGHKFTDVDTLGGIKDSGPNPGIGH 83
          +GHK+T+  TLGGIKDSGP+PG GH
Sbjct: 73 EGHKYTNSQTLGGIKDSGPSPGEGH 95

[Close]

BLAST of Lcy06g015970 vs. ExPASy TrEMBL
Match: A0A059B1H0 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02237 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.9e-12
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 4  KILSFVLIFSMMCNESLLGIVEARPLHM-----DSAVATNDFLAGLSLGAIKQSGPSPGD 63
          ++L  +L+ +M+   ++    EARP ++        VA   F  GLSLGAIKQ+GPSPG+
Sbjct: 6  RVLHILLVLAML--SAVFVGNEARPFNVMETKAPVGVACGGFFDGLSLGAIKQAGPSPGE 65

Query: 64 GHKFTDVDTLGGIKDSGPNPGIGH 83
          GHKFT+ +TLGGIKDSGP+PG GH
Sbjct: 66 GHKFTNSETLGGIKDSGPSPGEGH 87

[Close]

BLAST of Lcy06g015970 vs. NCBI nr
Match: KAG6595008.1 (PAMP-induced secreted peptide 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027036.1 hypothetical protein SDJN02_11045, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-16
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 5  ILSFVLIFSMMCNESLLGIVEARPLH-MDSAVATNDFLAGLSLGAIKQSGPSP-GDGHKF 64
          ++  +L+ +++     L   EARPL+ M SA    DF  GLSLGAIKQSGPSP GDGHKF
Sbjct: 8  LIGLILVAALLAGNGGLVATEARPLNAMASAAIAEDFFEGLSLGAIKQSGPSPGGDGHKF 67

Query: 65 TDVDTLGGIKDSGPNPGIGHSLIIDQRP 91
           + DTLGGIK+SGP+PG GHS I   RP
Sbjct: 68 VNFDTLGGIKESGPSPGDGHSHITSSRP 95

[Close]

BLAST of Lcy06g015970 vs. NCBI nr
Match: KAG6571202.1 (hypothetical protein SDJN03_30117, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-16
Identity = 57/110 (51.82%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 3   MKILSFVLIFSMMCNESLLGIVEARPLHMDSAVATNDFLAGLSLGAIKQSGPS-PGDGHK 62
           MKILSFVLI S++ NES  G V+AR LHM +   T +FL GLS GAIK  G S  GDGH 
Sbjct: 1   MKILSFVLILSLLSNESCFGTVQARHLHMTNFTTTRNFLGGLSFGAIKNFGSSCSGDGHN 60

Query: 63  FTDVDTLGGIKDSG-----------------------PNPGIGHSLIIDQ 89
           FTDV TLGGIK+SG                       P+PGI H+L IDQ
Sbjct: 61  FTDVVTLGGIKNSGPSPSGNCHNFNDVVTLDCIKSSAPSPGISHNLDIDQ 110

[Close]

BLAST of Lcy06g015970 vs. NCBI nr
Match: KAE8647505.1 (hypothetical protein Csa_003084 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-13
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 6  LSFVLIFSMMCNESLLGIVEARPLHM------DSAVATNDFLAGLSLGAIKQSGPSP-GD 65
          + F+L+ +++ N  L+ + +ARPL +       +A    DF  GLSLGAIKQSGPS  GD
Sbjct: 15 IGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGD 74

Query: 66 GHKFTDVDTLGGIKDSGPNPGIGH 83
          GHKF + DTLGGIKDSGP PG GH
Sbjct: 75 GHKFVNYDTLGGIKDSGPAPGDGH 98

[Close]

BLAST of Lcy06g015970 vs. NCBI nr
Match: KCW59487.1 (hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis])

HSP 1 Score: 83.6 bits (205), Expect = 9.7e-13
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 4  KILSFVLIFSMMCNESLLGIVEARPLHM-----DSAVATNDFLAGLSLGAIKQSGPSPGD 63
          ++L  +L+ +M+C  ++    EARP ++        VA   F  GLSLGAIKQ+GPSPG+
Sbjct: 6  RVLHILLVLAMLC--AVFVANEARPFNVMETKAPVGVACGGFFDGLSLGAIKQAGPSPGE 65

Query: 64 GHKFTDVDTLGGIKDSGPNPGIGH 83
          GHKFT+ +TLGGIKDSGP+PG GH
Sbjct: 66 GHKFTNSETLGGIKDSGPSPGEGH 87

[Close]

BLAST of Lcy06g015970 vs. NCBI nr
Match: TYK12857.1 (hypothetical protein E5676_scaffold255G004490 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 2  MMKI-LSFVLIFSMMCNESLLGIVEARPLHM----DSAVATNDFLAGLSLGAIKQSGPSP 61
          M KI +  +L+ +++ N  L+ + EARPL +     +A    DF  GLSLGAIKQSGPS 
Sbjct: 1  MSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIAEDFFEGLSLGAIKQSGPSA 60

Query: 62 -GDGHKFTDVDTLGGIKDSGPNPGIGHS 84
           GDGHKF + DT GG+KDSGP PG GHS
Sbjct: 61 GGDGHKFVNYDTFGGMKDSGPTPGDGHS 88

[Close]

BLAST of Lcy06g015970 vs. TAIR 10
Match: AT4G37290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon, hypocotyl, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 1  MMMKILSFVLIFSMMCNESLLGIVEARPLHMDSAVATNDFLAGLSLGAIKQSGPSPGDGH 60
          ++  IL F+LI S++     LG+ +     + S         GLSLG+IK SGPSPG+GH
Sbjct: 7  VLSSILFFMLIGSVLVESRPLGLTKTEEKFVAS------LFDGLSLGSIKDSGPSPGEGH 66

Query: 61 KFTD-VDTLGGIKDSGPNP-GIGH 83
          K  D  DT   +K SGP+P G GH
Sbjct: 67 KVVDRKDTFRFVKHSGPSPSGPGH 84

[Close]

BLAST of Lcy06g015970 vs. TAIR 10
Match: AT2G23270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37290.1); Has 36 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 1  MMMKILSFVLIFSMMCNESLLGIVEARPLHMDSAV--ATNDFLAGLSLGAIKQSGPSP-G 60
          MM K++    +F M+ + +   +VEARPL +  A       F  GLSLGAIK+SGPS  G
Sbjct: 2  MMNKVVLGSFLFFMLVSSNF--VVEARPLGLTKAEENLVAKFFDGLSLGAIKESGPSSGG 61

Query: 61 DGHKFTD-VDTLGGIKDSGPN-PGIGH 83
          +GH+F D  +TL   K SGP+  G GH
Sbjct: 62 EGHRFVDRTETLEYGKHSGPSTSGPGH 86

[Close]

BLAST of Lcy06g015970 vs. TAIR 10
Match: AT1G49800.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, stamen; EXPRESSED DURING: 4 anthesis; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 0


Query: 46  LGAIKQSGPSPGDG-HKFTDVDTLGGIKDSGPNPGIGH 83
           L  +KQSGPSPG G H+       G   DSGP+PG+GH
Sbjct: 71  LATVKQSGPSPGVGHHRAKGYKMFGRANDSGPSPGVGH 108

The following BLAST results are available for this feature:

BLAST of Lcy06g015970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JRC5	1.8e-06	42.86	PAMP-induced secreted peptide 2 OS=Arabidopsis thaliana OX=3702 GN=PIP2 PE=1 SV=...	[more]

BLAST of Lcy06g015970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIE2	1.2e-13	53.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491710 PE=4 SV=1	[more]
A0A059AZU8	4.7e-13	52.38	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02229 PE=4 SV...	[more]
A0A5D3CLN9	6.1e-13	53.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5B7BY66	8.0e-13	51.76	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_042998...	[more]
A0A059B1H0	8.9e-12	51.19	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02237 PE=4 SV...	[more]

BLAST of Lcy06g015970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595008.1	4.2e-16	56.82	PAMP-induced secreted peptide 2, partial [Cucurbita argyrosperma subsp. sororia]...	[more]
KAG6571202.1	7.2e-16	51.82	hypothetical protein SDJN03_30117, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8647505.1	2.6e-13	53.57	hypothetical protein Csa_003084 [Cucumis sativus]	[more]
KCW59487.1	9.7e-13	52.38	hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis]	[more]
TYK12857.1	1.3e-12	53.41	hypothetical protein E5676_scaffold255G004490 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy06g015970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37290.1	1.3e-07	42.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT2G23270.1	1.1e-06	44.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G49800.1	1.0e-04	52.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..90
IPR044700	PIP2/PIPL1	PANTHER	PTHR34663	OS06G0637400 PROTEIN	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g015970.1	Lcy06g015970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045087	innate immune response
biological_process	GO:0050793	regulation of developmental process