Tan0009337 (gene) Snake gourd v1

Overview


Name	Tan0009337
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase III subunit RPC7-like isoform X1
Location	LG06: 1904817 .. 1907823 (+)
RNA-Seq Expression	Tan0009337
Synteny	Tan0009337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAGAATCTCGTCTCGTTCGCCGTCTTCGACTCTTCCTCTCCTCTCTCTCGTATCATCGATTCGTTCTGCAGACTCCTCTCTCTCGTTCGCCGCTCGTGAGTGAGATCCAGATCGCCGTCGACTCTTCCTCTCCCTCGTATCATAGTATCGATTCCCTCGGCTACTCGTGCTCTGTCGACTTGACTCCCAGTGTCACCAACTCACCGCCGTTGATCCGTAGTCGAAGTTCTTTTCCATTAGATGATGAAAACAACTGTCTAGAATATAGATTTAAGGTCATAGACATTTGAGATTGGACCTCCTATTTTGTATTTGCACCTAGAGTAATTTACTCATCTGTTCTACACGCAGGGGGATGGCATTTAGAGGACGAGGGCGAGGACGAGGTGGCGGTGGAGGGACCTTTCAGTATGCCAAGCAAGAACCCTTCGAGCTTTTCCCGGAGGTAAGTGGTTCTGCAAGCTAGAAAAATCCTTCTAACTTCCACTTAGTTTGAAGTGGTGGACTGATATACATCTTAGCAAACTTCATTGATGCACAACAGGGTTCAAATTAGCACATATTTGTAAATTATGTCTGCATTATTTCACTTACATTTGCTGAATTTTGAGGAACTATGACACTGACATTTGAGTCTTGTGAACTTTTAGATAGTTTGAAAGATGAATCGAGGCTGTTTGTTTATTTATGAAATATGTATTACATTATTTTTTTTTATTTGTATGTATCTTGTTTTCCCTTTCTCCTGGAACTTTTACTTATTTTCTGGTTTACTACGACCTTAAAAGTATGGTTACTTTTTTCTCCTTGTAAGATATTTCCCGAGCAAATGACCAAATATAGTTTGATATTTTGAACTTATGACGTTAAAGTATTTGAGTTGGCACCTTGTCCTTTAAAGGTTTTTATTCTCACATTGATAAGTACGATGGTTTTTTGAAAAAAAAAATGTTTTTTTCTCCTTATATAACCATATATTCGCAGGTCTTTTCTTTCATTTATTTTGCTTTAAAATCATCGGTGATAAGTTACCTAAATTATTTGTTTTCTTATATTTTGATATCCATCACTTAATTTATGGAGTTTTTCGTTGAGGAAAGCCATAAATGGTGTAGCAGAGCTAATAGTTCAGCCAGCCACAACGCATCTCTCTTTTTACTTTAAAGTGGGAAATGTTAGTTCGAAGATAATATGCGTTGAACTGTAGTACATACACTTGAAGGCTTACTGGTTTATTTCCTTACTAAGGAGATGATTTCTGGCACAATTACAGAATGTAACCCTACCCAGCGTCAGTGATGTGCCTGAAGAAAAAGGCTTGGTTATTTGTAACTCCAAGTTGCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAGAATATCATGAAAAGTTAGTGTTGACTATGACCTTTTCTTTTTCTGAAAGCATTGTTATTGCCCTTCTGTCTTGAACATTTTGTTGCAAAAAATTTGGTAATTTTGTACACTGCTTGGATTTTTGTATCAGAGATGCAAAGAACTGAGGTAGAGAAATTTTCCGATAGATCCAAGTCGAATAGTACATTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACAACAAGGAACTTTCCTGAAGAATTGGTTGAAGGTCTGTAATCTAAGATCTCTCAGAGAGGGATGAGAGTTATATACTAAGTTCATCTGTCTATTTACTTCAATCATTTCTTTTTGGGGTCACTCTATGTATACAGATACTCCACTGTTAAATTTCAGGTTTCAAAGGGAAGTTGAGGAACAAACGAAAAGTTCAATGGAATCCTGAGTCAGGTTTGTTGGGATGACAAGAGTTTCTCCCTCTCAACTAATTCAATGCCTATGCTATTTCTGTTACTACTTGTTCATGGATCCTTGTTGGTATATGTCTTATTACAGGGCTGCAAAAATTGGACTTTTTCGAGAAGCGTGAAGAATCTCTCAAGGTAATACATTTTCCACCTCAATCTCTCATTCCCTTTATAACAGCTAGTCTCTTAAATATTTTCTTCTTTTAGTTCTTATTCCAGTTTATTATTAGAAATTGTTGTACATAACCTCTTGCTCTGCAAGATCCCTGTACTGATATTTTCTTTTCTTGACTTCATTAGGGACAGGATAAGGATGGTAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAGGATGAAGAAGAAGATGATGCACAGTCTGAGGAACTTACCGATGATGATTATTATCAGGTTTTGAGAGGGACTGTTGGATTTCTTTTTATGCTTACTTAAATCTGCATCGTCATCAGAACCTTTGTAGGATCTAATGTCCATTTTTCCTGTTTCATGTCTTCTGACTTGCCTAAACATCTTATATTCTTCACTCTTGAAAGTTTTCTCATACTGACATCATTGAGTTGCAGAACGAATACTTCGACGATGATGAAGATGATTACAACATGGAAGATGATGGAGGAGGTATGGTTTTTACTCTAATGGAGAGAATGATATTGTAAGAATTTGAGTTTAGATCTTCACCATCTATCATTTTTTTAAAATATATATATACACACACTACAAGTCTACAACATGTGGGATAAGGATTTGAACTTATGACTTTTTAGAGGAAGTAAAGATGCTTTAAACATTGAGATATGCTTGTGTTAGATTTTATAATCTAATAACTCGAGTTGGCACCTTTATTGTCTAATATTATGTTAAATCATCGATAGACTCAAAATTTTATATCATTAAGCTTTGATAAAGCTATTTAATTTATTCTCAATACAAATACTGATGTATATAGTTTCATAATATTGCAGATGAACCAGAATATTAGTCACTATGAAAGGCGGTGGTAAGATTGGTGTAGGGCATTGGATTGATTAGCCAGATTTAATTATTTCATAAGGTTTAAATTTCCTCTTTCTTTATTTTTTTCCTTTTTTTTAAAAAAATCTGAGACTGTAAAGTATTCTTTTTTTTTTAATAATTAAATTTAAGTTCAAATC

mRNA sequence

GTGAGAATCTCGTCTCGTTCGCCGTCTTCGACTCTTCCTCTCCTCTCTCTCGTATCATCGATTCGTTCTGCAGACTCCTCTCTCTCGTTCGCCGCTCGTGAGTGAGATCCAGATCGCCGTCGACTCTTCCTCTCCCTCGTATCATAGTATCGATTCCCTCGGCTACTCGTGCTCTGTCGACTTGACTCCCAGTGTCACCAACTCACCGCCGTTGATCCGTAGTCGAAGTTCTTTTCCATTAGATGATGAAAACAACTGTCTAGAATATAGATTTAAGGGGGATGGCATTTAGAGGACGAGGGCGAGGACGAGGTGGCGGTGGAGGGACCTTTCAGTATGCCAAGCAAGAACCCTTCGAGCTTTTCCCGGAGAATGTAACCCTACCCAGCGTCAGTGATGTGCCTGAAGAAAAAGGCTTGGTTATTTGTAACTCCAAGTTGCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAGAATATCATGAAAAAGATGCAAAGAACTGAGGTAGAGAAATTTTCCGATAGATCCAAGTCGAATAGTACATTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACAACAAGGAACTTTCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGAGGAACAAACGAAAAGTTCAATGGAATCCTGAGTCAGGGCTGCAAAAATTGGACTTTTTCGAGAAGCGTGAAGAATCTCTCAAGGGACAGGATAAGGATGGTAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAGGATGAAGAAGAAGATGATGCACAGTCTGAGGAACTTACCGATGATGATTATTATCAGAACGAATACTTCGACGATGATGAAGATGATTACAACATGGAAGATGATGGAGGAGATGAACCAGAATATTAGTCACTATGAAAGGCGGTGGTAAGATTGGTGTAGGGCATTGGATTGATTAGCCAGATTTAATTATTTCATAAGGTTTAAATTTCCTCTTTCTTTATTTTTTTCCTTTTTTTTAAAAAAATCTGAGACTGTAAAGTATTCTTTTTTTTTTAATAATTAAATTTAAGTTCAAATC

Coding sequence (CDS)

ATGGCATTTAGAGGACGAGGGCGAGGACGAGGTGGCGGTGGAGGGACCTTTCAGTATGCCAAGCAAGAACCCTTCGAGCTTTTCCCGGAGAATGTAACCCTACCCAGCGTCAGTGATGTGCCTGAAGAAAAAGGCTTGGTTATTTGTAACTCCAAGTTGCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAGAATATCATGAAAAAGATGCAAAGAACTGAGGTAGAGAAATTTTCCGATAGATCCAAGTCGAATAGTACATTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACAACAAGGAACTTTCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGAGGAACAAACGAAAAGTTCAATGGAATCCTGAGTCAGGGCTGCAAAAATTGGACTTTTTCGAGAAGCGTGAAGAATCTCTCAAGGGACAGGATAAGGATGGTAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAGGATGAAGAAGAAGATGATGCACAGTCTGAGGAACTTACCGATGATGATTATTATCAGAACGAATACTTCGACGATGATGAAGATGATTACAACATGGAAGATGATGGAGGAGATGAACCAGAATATTAG

Protein sequence

MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKASPFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDDGGDEPEY

Homology

[Close]

BLAST of Tan0009337 vs. NCBI nr
Match: XP_022154143.1 (ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154151.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154160.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154168.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 193/207 (93.24%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 1   MAFR-GRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKA 60
           MAFR GRGRGRGGGGG FQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNS+LLNYWKA
Sbjct: 1   MAFRGGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSRLLNYWKA 60

Query: 61  SPFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLR 120
           SPF+LEEN++KKMQRTE+EKFSDRSK NSTLKRDSLAQILQLT+RNFPEELVEGFKGKLR
Sbjct: 61  SPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR 120

Query: 121 NKRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDD 180
           NKRKVQWNPESGLQKLDF EKREESLKGQDKD KEKKEGEEGEDE++EEDDAQSEELTDD
Sbjct: 121 NKRKVQWNPESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDD 180

Query: 181 DYYQNEYFDDDEDDYNMEDDGGDEPEY 207
           DYYQNEYFDDDEDDYNMEDDGGDEP Y
Sbjct: 181 DYYQNEYFDDDEDDYNMEDDGGDEPTY 207

[Close]

BLAST of Tan0009337 vs. NCBI nr
Match: XP_038898864.1 (glutamic acid-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 357.8 bits (917), Expect = 6.1e-95
Identity = 190/206 (92.23%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKAS 60
           MAFRGRGRGRGGGGG FQYAKQEPFELFPENVTLP VSD+PEEK L I N+K LNYWKAS
Sbjct: 1   MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPIVSDMPEEKSLAIRNNKFLNYWKAS 60

Query: 61  PFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRN 120
           PFYLEEN+MKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLT+RNFPEELV+GFKGKLR 
Sbjct: 61  PFYLEENVMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVDGFKGKLRT 120

Query: 121 KRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGLQKLDF EKREESLKGQDKD KEKKEGEEGEDEDEEEDDAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDDGGDEPEY 207
           YYQNEYFDDDEDDYNME++GGDEPEY
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGGDEPEY 206

[Close]

BLAST of Tan0009337 vs. NCBI nr
Match: XP_023548752.1 (DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 186/206 (90.29%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE KGLVICNS+LLNYWKAS
Sbjct: 1   MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRN 120
           PFYLEEN+MKKMQRTE+E+FSDR+KSNSTLKRDSLAQILQLT+RNFPEELVEGFKGKLR+
Sbjct: 61  PFYLEENVMKKMQRTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDF EKREESLKGQ+KD KEKKEGE  EDEDEEEDDAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEEDDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDDGGDEPEY 207
           YYQNEYFDDDEDDYNME++GGDEPEY
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGGDEPEY 205

[Close]

BLAST of Tan0009337 vs. NCBI nr
Match: XP_022953194.1 (glutamic acid-rich protein-like [Cucurbita moschata])

HSP 1 Score: 347.8 bits (891), Expect = 6.3e-92
Identity = 184/206 (89.32%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE KGLVICNS+LLNYWKAS
Sbjct: 1   MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRN 120
           PFYLEEN+MKKMQ+TE+E+FSDR+KSNSTLKRDSLAQILQLT+RNFPEELVEGFKGKLR+
Sbjct: 61  PFYLEENVMKKMQKTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDF EKREESLKGQ+KD KEKKEGE  EDEDEE+DDAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEDDDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDDGGDEPEY 207
           YYQNEYFDDDEDDYNME++GGDEPEY
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGGDEPEY 205

[Close]

BLAST of Tan0009337 vs. NCBI nr
Match: KAG6575499.1 (hypothetical protein SDJN03_26138, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347.8 bits (891), Expect = 6.3e-92
Identity = 184/206 (89.32%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE KGLVICNS+LLNYWKAS
Sbjct: 126 MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 185

Query: 61  PFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRN 120
           PFYLEEN+MKKMQ+TE+E+FSDR+KSNSTLKRDSLAQILQLT+RNFPEELVEGFKGKLR+
Sbjct: 186 PFYLEENVMKKMQKTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 245

Query: 121 KRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDF EKREESLKGQ+KD KEKKEGE  EDEDEE+DDAQSEELTDDD
Sbjct: 246 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEDDDAQSEELTDDD 305

Query: 181 YYQNEYFDDDEDDYNMEDDGGDEPEY 207
           YYQNEYFDDDEDDYNME++GGDEPEY
Sbjct: 306 YYQNEYFDDDEDDYNMEEEGGDEPEY 330

[Close]

BLAST of Tan0009337 vs. ExPASy TrEMBL
Match: A0A6J1DMV9 (ribosomal L1 domain-containing protein CG13096-like OS=Momordica charantia OX=3673 GN=LOC111021466 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.2e-97
Identity = 193/207 (93.24%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 1   MAFR-GRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKA 60
           MAFR GRGRGRGGGGG FQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNS+LLNYWKA
Sbjct: 1   MAFRGGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSRLLNYWKA 60

Query: 61  SPFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLR 120
           SPF+LEEN++KKMQRTE+EKFSDRSK NSTLKRDSLAQILQLT+RNFPEELVEGFKGKLR
Sbjct: 61  SPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR 120

Query: 121 NKRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDD 180
           NKRKVQWNPESGLQKLDF EKREESLKGQDKD KEKKEGEEGEDE++EEDDAQSEELTDD
Sbjct: 121 NKRKVQWNPESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDD 180

Query: 181 DYYQNEYFDDDEDDYNMEDDGGDEPEY 207
           DYYQNEYFDDDEDDYNMEDDGGDEP Y
Sbjct: 181 DYYQNEYFDDDEDDYNMEDDGGDEPTY 207

[Close]

BLAST of Tan0009337 vs. ExPASy TrEMBL
Match: A0A6J1GNY2 (glutamic acid-rich protein-like OS=Cucurbita moschata OX=3662 GN=LOC111455808 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.1e-92
Identity = 184/206 (89.32%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE KGLVICNS+LLNYWKAS
Sbjct: 1   MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRN 120
           PFYLEEN+MKKMQ+TE+E+FSDR+KSNSTLKRDSLAQILQLT+RNFPEELVEGFKGKLR+
Sbjct: 61  PFYLEENVMKKMQKTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDF EKREESLKGQ+KD KEKKEGE  EDEDEE+DDAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEDDDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDDGGDEPEY 207
           YYQNEYFDDDEDDYNME++GGDEPEY
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGGDEPEY 205

[Close]

BLAST of Tan0009337 vs. ExPASy TrEMBL
Match: A0A6J1JVL5 (DNA-directed RNA polymerase III subunit rpc31-like OS=Cucurbita maxima OX=3661 GN=LOC111488719 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.8e-92
Identity = 184/206 (89.32%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE KGLVICNS+LLNYWKAS
Sbjct: 1   MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRN 120
           PFYLEEN+MKKMQ+ E+E+FSDR+KSNSTLKRDSLAQILQLT+RNFPEELVEGFKGKLR+
Sbjct: 61  PFYLEENVMKKMQKIEIERFSDRAKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDF EKREESLKGQ+KD KEKKEGE  EDEDEEED+AQSEELTDDD
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEEDEAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDDGGDEPEY 207
           YYQNEYFDDDEDDYNMED+GGDEPEY
Sbjct: 181 YYQNEYFDDDEDDYNMEDEGGDEPEY 205

[Close]

BLAST of Tan0009337 vs. ExPASy TrEMBL
Match: A0A1S3CGV4 (DNA-directed RNA polymerase III subunit OS=Cucumis melo OX=3656 GN=LOC103500773 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.2e-89
Identity = 178/206 (86.41%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKAS 60
           MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS++PEE  L +     L YWKAS
Sbjct: 1   MAFRGRGRGRGGGGGSFQYAKQEPFELFPENVTLPSVSEMPEELALAMGQINFLKYWKAS 60

Query: 61  PFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRN 120
           PFYLEEN+MKKMQRTE+EKFSDR K NSTLKRDSLAQI+QLT+RNFPEELVEGFKGKLR 
Sbjct: 61  PFYLEENVMKKMQRTEIEKFSDRLKMNSTLKRDSLAQIIQLTSRNFPEELVEGFKGKLRT 120

Query: 121 KRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL+K+DF EKREESLKGQDK+ KEKKEGEEGEDEDEEE+DAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLKKMDFLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDDGGDEPEY 207
           YYQNEYFDDDEDDYNME++GGDEPEY
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGGDEPEY 206

[Close]

BLAST of Tan0009337 vs. ExPASy TrEMBL
Match: A0A5D3BVU1 (DNA-directed RNA polymerase III subunit RPC7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00450 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 7.3e-86
Identity = 178/224 (79.46%), Postives = 192/224 (85.71%), Query Frame = 0


Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKAS 60
           MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS++PEE  L +     L YWKAS
Sbjct: 1   MAFRGRGRGRGGGGGSFQYAKQEPFELFPENVTLPSVSEMPEELALAMGQINFLKYWKAS 60

Query: 61  PFYLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRN 120
           PFYLEEN+MKKMQRTE+EKFSDR K NSTLKRDSLAQI+QLT+RNFPEELVEGFKGKLR 
Sbjct: 61  PFYLEENVMKKMQRTEIEKFSDRLKMNSTLKRDSLAQIIQLTSRNFPEELVEGFKGKLRT 120

Query: 121 KRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL+K+DF EKREESLKGQDK+ KEKKEGEEGEDEDEEE+DAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLKKMDFLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDDGG------------------DEPEY 207
           YYQNEYFDDDEDDYNME++GG                  DEPEY
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGGGFLPINAKADVIWSNIVADEPEY 224

[Close]

BLAST of Tan0009337 vs. TAIR 10
Match: AT4G01590.2 (unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-20
Identity = 82/207 (39.61%), Postives = 121/207 (58.45%), Query Frame = 0


Query: 1   MAFRG-RGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKA 60
           M+++G RG+ +G GG    Y K EPF +FPE +TLP    +  +  LV        +W+ 
Sbjct: 1   MSWKGARGKPKGYGG---DYGKPEPFVIFPE-ITLPDPKSISTDSQLVQSYFTFNKFWRN 60

Query: 61  SPFYLEENIMKKMQR--TEVEKFSDRSKSN-STLKRDSLAQILQLTTRNFPEELVEGFKG 120
           SP++L +  + K ++    +E++SD  K    + K  S    L L   NFP+EL+   + 
Sbjct: 61  SPYHLGDGGVSKKEKESLNIERYSDSLKPKMKSNKNGSFFDFLVLRPDNFPKELLGDTRR 120

Query: 121 KLRNKRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEEL 180
           + R  ++ +W+ E+ LQKLD FEK E   K    +GKE+K  EEGED DEE  +++ EE 
Sbjct: 121 EQRPVKRAKWSQEADLQKLDVFEKLEAKFK---VEGKEEK--EEGED-DEEVVESEGEES 180

Query: 181 TDDDYYQNEYFDDDEDDYNMEDDGGDE 204
            + DY QN+ FDDD+DDYN EDDG +E
Sbjct: 181 DNGDYDQNQDFDDDDDDYNNEDDGFEE 197

[Close]

BLAST of Tan0009337 vs. TAIR 10
Match: AT4G01590.1 (unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345 proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa - 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes - 773 (source: NCBI BLink). )

HSP 1 Score: 95.5 bits (236), Expect = 5.3e-20
Identity = 83/210 (39.52%), Postives = 121/210 (57.62%), Query Frame = 0


Query: 1   MAFRG-RGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKA 60
           M+++G RG+ +G GG    Y K EPF +FPE +TLP    +  +  LV        +W+ 
Sbjct: 1   MSWKGARGKPKGYGG---DYGKPEPFVIFPE-ITLPDPKSISTDSQLVQSYFTFNKFWRN 60

Query: 61  SPFYLEENIMKKMQR--TEVEKFSDRSKSN-STLKRDSLAQILQLTTRNFPEELVEGFKG 120
           SP++L +  + K ++    +E++SD  K    + K  S    L L   NFP+EL+   + 
Sbjct: 61  SPYHLGDGGVSKKEKESLNIERYSDSLKPKMKSNKNGSFFDFLVLRPDNFPKELLGDTRR 120

Query: 121 KLRNKRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEEL 180
           + R  ++ +W+ E+ LQKLD FEK E   K    +GKE+K  EEGED DEE  +++ EE 
Sbjct: 121 EQRPVKRAKWSQEADLQKLDVFEKLEAKFK---VEGKEEK--EEGED-DEEVVESEGEES 180

Query: 181 TDDDYYQNEYFDDDEDDYNMEDDGGDEPEY 207
            + DY QN+ FDDD+DDYN EDDG  E  Y
Sbjct: 181 DNGDYDQNQDFDDDDDDYNNEDDGLVEEVY 200

[Close]

BLAST of Tan0009337 vs. TAIR 10
Match: AT4G01590.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1). )

HSP 1 Score: 95.5 bits (236), Expect = 5.3e-20
Identity = 83/210 (39.52%), Postives = 121/210 (57.62%), Query Frame = 0


Query: 1   MAFRG-RGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLLNYWKA 60
           M+++G RG+ +G GG    Y K EPF +FPE +TLP    +  +  LV        +W+ 
Sbjct: 1   MSWKGARGKPKGYGG---DYGKPEPFVIFPE-ITLPDPKSISTDSQLVQSYFTFNKFWRN 60

Query: 61  SPFYLEENIMKKMQR--TEVEKFSDRSKSN-STLKRDSLAQILQLTTRNFPEELVEGFKG 120
           SP++L +  + K ++    +E++SD  K    + K  S    L L   NFP+EL+   + 
Sbjct: 61  SPYHLGDGGVSKKEKESLNIERYSDSLKPKMKSNKNGSFFDFLVLRPDNFPKELLGDTRR 120

Query: 121 KLRNKRKVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEEL 180
           + R  ++ +W+ E+ LQKLD FEK E   K    +GKE+K  EEGED DEE  +++ EE 
Sbjct: 121 EQRPVKRAKWSQEADLQKLDVFEKLEAKFK---VEGKEEK--EEGED-DEEVVESEGEES 180

Query: 181 TDDDYYQNEYFDDDEDDYNMEDDGGDEPEY 207
            + DY QN+ FDDD+DDYN EDDG  E  Y
Sbjct: 181 DNGDYDQNQDFDDDDDDYNNEDDGLVEEVY 200

[Close]

BLAST of Tan0009337 vs. TAIR 10
Match: AT4G35680.1 (Arabidopsis protein of unknown function (DUF241) )

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-15
Identity = 76/204 (37.25%), Postives = 110/204 (53.92%), Query Frame = 0


Query: 5   GRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSKLL--NYWKASPF 64
           GRG+ +G GG    Y K EPF +FPE +TLP    +  +  LV+  S      +W  SP+
Sbjct: 331 GRGKPKGYGG---DYGKPEPFVIFPE-ITLPDPKSISTDSQLVVVQSYFTFNKFWMNSPY 390

Query: 65  YLEENIMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTTRNFPEELVEGFKGKLRNKR 124
           +L +  + K           + K++  ++R            NF +ELV   + + R  +
Sbjct: 391 HLCDGGVSK-----------KEKASLDIERPD----------NFSKELVGDTRREQRPVK 450

Query: 125 KVQWNPESGLQKLDFFEKREESLKGQDKDGKEKKEGEEGEDEDEEEDDAQSEELTDDDYY 184
           + +W+ E+ LQKLD FEK E   K Q   G E+K  E+GED DE+  +++ EE  + DY 
Sbjct: 451 RAKWSQEADLQKLDVFEKLESKFKTQ---GNEEK--EDGED-DEQVVESEGEESDNGDYD 503

Query: 185 QNEYFDDDEDDYNMEDDGGDEPEY 207
           QN+ FDDDEDDYN E+DGG E  Y
Sbjct: 511 QNQDFDDDEDDYNHEEDGGFEEVY 503

The following BLAST results are available for this feature:

BLAST of Tan0009337 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009337 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154143.1	1.9e-96	93.24	ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_02...	[more]
XP_038898864.1	6.1e-95	92.23	glutamic acid-rich protein-like isoform X2 [Benincasa hispida]	[more]
XP_023548752.1	1.3e-92	90.29	DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953194.1	6.3e-92	89.32	glutamic acid-rich protein-like [Cucurbita moschata]	[more]
KAG6575499.1	6.3e-92	89.32	hypothetical protein SDJN03_26138, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0009337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMV9	9.2e-97	93.24	ribosomal L1 domain-containing protein CG13096-like OS=Momordica charantia OX=36...	[more]
A0A6J1GNY2	3.1e-92	89.32	glutamic acid-rich protein-like OS=Cucurbita moschata OX=3662 GN=LOC111455808 PE...	[more]
A0A6J1JVL5	6.8e-92	89.32	DNA-directed RNA polymerase III subunit rpc31-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A1S3CGV4	3.2e-89	86.41	DNA-directed RNA polymerase III subunit OS=Cucumis melo OX=3656 GN=LOC103500773 ...	[more]
A0A5D3BVU1	7.3e-86	79.46	DNA-directed RNA polymerase III subunit RPC7-like isoform X1 OS=Cucumis melo var...	[more]

BLAST of Tan0009337 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01590.2	2.4e-20	39.61	unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein...	[more]
AT4G01590.1	5.3e-20	39.52	unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein...	[more]
AT4G01590.3	5.3e-20	39.52	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G35680.1	1.3e-15	37.25	Arabidopsis protein of unknown function (DUF241)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024661	DNA-directed RNA polymerase III, subunit Rpc31	PFAM	PF11705	RNA_pol_3_Rpc31	coord: 4..181 e-value: 1.9E-11 score: 44.6
IPR024661	DNA-directed RNA polymerase III, subunit Rpc31	PANTHER	PTHR15367	DNA-DIRECTED RNA POLYMERASE III	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..157
None	No IPR available	PANTHER	PTHR15367:SF2	DNA-DIRECTED RNA POLYMERASE III SUBUNIT	coord: 1..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009337.1	Tan0009337.1	mRNA
Tan0009337.2	Tan0009337.2	mRNA
Tan0009337.3	Tan0009337.3	mRNA
Tan0009337.4	Tan0009337.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity