Tan0001440.1 (mRNA) Snake gourd v1

Overview


Name	Tan0001440.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG05: 55390951 .. 55391211 (+)
Sequence length	261
RNA-Seq Expression	Tan0001440.1
Synteny	Tan0001440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACCGCTAAGGAGATCATGGGATCCTTACAGGCGATGTTCGAACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTTTCGTATGAAGGAGGGGGCCTCTGTTAGGGAACATGTACTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATCTCTTCCGAAGAGTTTCCTGTCATTCCGCACTAATGCAGTGA

mRNA sequence

ATGGTCACCGCTAAGGAGATCATGGGATCCTTACAGGCGATGTTCGAACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTTTCGTATGAAGGAGGGGGCCTCTGTTAGGGAACATGTACTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATCTCTTCCGAAGAGTTTCCTGTCATTCCGCACTAATGCAGTGA

Coding sequence (CDS)

ATGGTCACCGCTAAGGAGATCATGGGATCCTTACAGGCGATGTTCGAACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTTTCGTATGAAGGAGGGGGCCTCTGTTAGGGAACATGTACTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATCTCTTCCGAAGAGTTTCCTGTCATTCCGCACTAATGCAGTGA

Protein sequence

MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMDLFRRVSCHSALMQ

Homology

[Close]

BLAST of Tan0001440.1 vs. NCBI nr
Match: XP_038880476.1 (uncharacterized protein LOC120072136 [Benincasa hispida])

HSP 1 Score: 110.5 bits (275), Expect = 7.1e-21
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           MV AKEIM SLQA+F QPSSS  +DA+KYVYNFRMKEG +VREHVLDMMVHFN+ EVNG 
Sbjct: 88  MVMAKEIMDSLQALFGQPSSSAMHDAIKYVYNFRMKEGTNVREHVLDMMVHFNIVEVNGA 147

Query: 61  VIDEKSQVTFIMD 74
           V++EK+Q  FIM+
Sbjct: 148 VMNEKNQGGFIME 160

[Close]

BLAST of Tan0001440.1 vs. NCBI nr
Match: XP_038876370.1 (uncharacterized protein LOC120068812, partial [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-20
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           MVTAKEIM SLQA+F QPSSS  +DA+K+VYN RMKEG +VREHVLDMMVHFN+ EVN  
Sbjct: 88  MVTAKEIMNSLQALFGQPSSSAMHDAIKWVYNCRMKEGPNVREHVLDMMVHFNITEVNRA 147

Query: 61  VIDEKSQVTFIMD 74
           V++EKSQV FIM+
Sbjct: 148 VMNEKSQVGFIME 160

[Close]

BLAST of Tan0001440.1 vs. NCBI nr
Match: XP_038895904.1 (uncharacterized protein LOC120084074 [Benincasa hispida])

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-20
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           MVTAKEIM SLQAMFEQ S S+ ++ LKY+YN  MKE  S+REHVLDMMV  NVA+ NG+
Sbjct: 58  MVTAKEIMESLQAMFEQLSKSIRHETLKYIYNCHMKEWVSIREHVLDMMVDINVAQANGI 117

Query: 61  VIDEKSQVTFIMDLFRRV 79
           VIDEKSQV+FIM+  +++
Sbjct: 118 VIDEKSQVSFIMESLQKI 135

[Close]

BLAST of Tan0001440.1 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

[Close]

BLAST of Tan0001440.1 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 147 VIDEASQVSFILE 159

[Close]

BLAST of Tan0001440.1 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

[Close]

BLAST of Tan0001440.1 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

[Close]

BLAST of Tan0001440.1 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 265 VIDEASQVSFILE 277

[Close]

BLAST of Tan0001440.1 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

[Close]

BLAST of Tan0001440.1 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

The following BLAST results are available for this feature:

BLAST of Tan0001440.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880476.1	7.1e-21	73.97	uncharacterized protein LOC120072136 [Benincasa hispida]	[more]
XP_038876370.1	2.7e-20	73.97	uncharacterized protein LOC120068812, partial [Benincasa hispida]	[more]
XP_038895904.1	6.0e-20	66.67	uncharacterized protein LOC120084074 [Benincasa hispida]	[more]
KAA0044955.1	1.7e-19	71.23	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.7e-19	71.23	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0001440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	8.5e-20	71.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	8.5e-20	71.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	8.5e-20	71.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	8.5e-20	71.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	8.5e-20	71.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0001440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..72 e-value: 1.8E-7 score: 31.0
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..74
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0001440	Tan0001440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001440.1-exon	Tan0001440.1-exon-LG05:55390951..55391211	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001440.1-cds	Tan0001440.1-cds-LG05:55390951..55391211	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0001440.1	Tan0001440.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding