IVF0017571 (gene) Melon (IVF77) v1

Overview


Name	IVF0017571
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Stress response protein NST1-like
Location	chr10: 13924491 .. 13924727 (-)
RNA-Seq Expression	IVF0017571
Synteny	IVF0017571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGCTTCGCTAAGTTAAGTGAGAGAGTTAAGGATATGGCAGCAAAGAACAAGGCCACCGAAAAACAAGAAGTAGACTGCCTTGAGGTTGTGGCGAAAGAATTCACAGAAGAAATTGAGAATATGAGTCTATTAGAGACAAGGCTATCGCCTGAAGAACCTAAACTAAGAGAAGCCGCCCAACCTAAGAAAATCGAAAGCAAGTCTGGGACATCAAGACCTAGGGATGCCTAG

mRNA sequence

ATGGGGAGCTTCGCTAAGTTAAGTGAGAGAGTTAAGGATATGGCAGCAAAGAACAAGGCCACCGAAAAACAAGAAGTAGACTGCCTTGAGGTTGTGGCGAAAGAATTCACAGAAGAAATTGAGAATATGAGTCTATTAGAGACAAGGCTATCGCCTGAAGAACCTAAACTAAGAGAAGCCGCCCAACCTAAGAAAATCGAAAGCAAGTCTGGGACATCAAGACCTAGGGATGCCTAG

Coding sequence (CDS)

ATGGGGAGCTTCGCTAAGTTAAGTGAGAGAGTTAAGGATATGGCAGCAAAGAACAAGGCCACCGAAAAACAAGAAGTAGACTGCCTTGAGGTTGTGGCGAAAGAATTCACAGAAGAAATTGAGAATATGAGTCTATTAGAGACAAGGCTATCGCCTGAAGAACCTAAACTAAGAGAAGCCGCCCAACCTAAGAAAATCGAAAGCAAGTCTGGGACATCAAGACCTAGGGATGCCTAG

Protein sequence

MGSFAKLSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKIESKSGTSRPRDA

Homology

[Close]

BLAST of IVF0017571 vs. ExPASy TrEMBL
Match: A0A5A7TQ54 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00290 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.3e-13
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 7   LSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKI 66
           LSE+V+D A + KATE Q+VD LEVVA+EF++EIE MS LE RLSP EP+L+E  QPKK 
Sbjct: 73  LSEKVEDQATRYKATENQKVDHLEVVAEEFSKEIERMSPLEPRLSPNEPRLKEVVQPKKK 132

Query: 67  ESKSGTSRPRDA 79
           +SK+GTSR  DA
Sbjct: 133 KSKAGTSRLEDA 144

[Close]

BLAST of IVF0017571 vs. ExPASy TrEMBL
Match: A0A5A7VMZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001080 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 20 ATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKIESKSGTS 74
          ATEKQEVD LEVVA+EFT+EIENMS LE RLSP+E  LREA QPKKI+SK  TS
Sbjct: 2  ATEKQEVDHLEVVAEEFTKEIENMSQLEPRLSPDEHGLREAPQPKKIKSKPKTS 55

[Close]

BLAST of IVF0017571 vs. ExPASy TrEMBL
Match: A0A5D3BXZ2 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00240 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 3   SFAKLSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQ 62
           + A LSE+ + +A KNKA  +QEV+ LEVV +EF++EI+ MS LE RL P+E  L   AQ
Sbjct: 131 TLANLSEQAESVATKNKAVARQEVNHLEVVVEEFSQEIKRMSSLEPRLRPKETGLVSVAQ 190

Query: 63  PKKIESKSGTSRPRD 78
           PKK ++K GTSRP D
Sbjct: 191 PKKGKNKEGTSRPED 205

[Close]

BLAST of IVF0017571 vs. ExPASy TrEMBL
Match: A0A5D3C3I9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1085G00100 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 7  LSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKI 66
          LSE+V+ +AA+NK  E QE D ++VV K F+ EIE MS LE  L PEEP+L +    KK 
Sbjct: 22 LSEQVESVAARNKLAEHQEGDRVDVVVKTFSREIEGMSPLEPGLRPEEPRLVKVQLQKKS 81

Query: 67 ESKSGTSRPRD 78
          +SK GTSRP D
Sbjct: 82 KSKEGTSRPED 92

[Close]

BLAST of IVF0017571 vs. ExPASy TrEMBL
Match: A0A5A7VGG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00360 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 34/71 (47.89%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 7  LSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKI 66
          +SERV+++A +NKA E QEV  L+++ +EF + ++N+SLLE  L  +EP L+EA Q KK+
Sbjct: 1  MSERVENVAVRNKAVEYQEVGHLKLIVEEFMKRLDNISLLEPGLLSDEPGLKEAIQQKKL 60

Query: 67 ESKSGTSRPRD 78
          ++K+G S+P+D
Sbjct: 61 KAKAGISKPKD 71

[Close]

BLAST of IVF0017571 vs. NCBI nr
Match: KAA0043535.1 (hypothetical protein E6C27_scaffold335G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.12e-17
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 7   LSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKI 66
           LSE+V+D A + KATE Q+VD LEVVA+EF++EIE MS LE RLSP EP+L+E  QPKK 
Sbjct: 73  LSEKVEDQATRYKATENQKVDHLEVVAEEFSKEIERMSPLEPRLSPNEPRLKEVVQPKKK 132

Query: 67  ESKSGTSRPRDA 78
           +SK+GTSR  DA
Sbjct: 133 KSKAGTSRLEDA 144

[Close]

BLAST of IVF0017571 vs. NCBI nr
Match: KAA0067936.1 (hypothetical protein E6C27_scaffold138G001080 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 1.44e-14
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 20 ATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKIESKSGTS 73
          ATEKQEVD LEVVA+EFT+EIENMS LE RLSP+E  LREA QPKKI+SK  TS
Sbjct: 2  ATEKQEVDHLEVVAEEFTKEIENMSQLEPRLSPDEHGLREAPQPKKIKSKPKTS 55

[Close]

BLAST of IVF0017571 vs. NCBI nr
Match: KAA0052868.1 (stress response protein NST1-like [Cucumis melo var. makuwa] >TYK04357.1 stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.01e-12
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 3   SFAKLSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQ 62
           + A LSE+ + +A KNKA  +QEV+ LEVV +EF++EI+ MS LE RL P+E  L   AQ
Sbjct: 131 TLANLSEQAESVATKNKAVARQEVNHLEVVVEEFSQEIKRMSSLEPRLRPKETGLVSVAQ 190

Query: 63  PKKIESKSGTSRPRD 77
           PKK ++K GTSRP D
Sbjct: 191 PKKGKNKEGTSRPED 205

[Close]

BLAST of IVF0017571 vs. NCBI nr
Match: KAA0067452.1 (hypothetical protein E6C27_scaffold40G001180 [Cucumis melo var. makuwa] >TYK09553.1 hypothetical protein E5676_scaffold757G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.36e-11
Identity = 34/71 (47.89%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 7  LSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKI 66
          +SERV+++A +NKA E QEV  L+++ +EF + ++N+SLLE  L  +EP L+EA Q KK+
Sbjct: 1  MSERVENVAVRNKAVEYQEVGHLKLIVEEFMKRLDNISLLEPGLLSDEPGLKEAIQQKKL 60

Query: 67 ESKSGTSRPRD 77
          ++K+G S+P+D
Sbjct: 61 KAKAGISKPKD 71

[Close]

BLAST of IVF0017571 vs. NCBI nr
Match: KAA0037283.1 (hypothetical protein E6C27_scaffold68G00180 [Cucumis melo var. makuwa] >TYK05900.1 hypothetical protein E5676_scaffold1085G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.98e-11
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 7  LSERVKDMAAKNKATEKQEVDCLEVVAKEFTEEIENMSLLETRLSPEEPKLREAAQPKKI 66
          LSE+V+ +AA+NK  E QE D ++VV K F+ EIE MS LE  L PEEP+L +    KK 
Sbjct: 22 LSEQVESVAARNKLAEHQEGDRVDVVVKTFSREIEGMSPLEPGLRPEEPRLVKVQLQKKS 81

Query: 67 ESKSGTSRPRD 77
          +SK GTSRP D
Sbjct: 82 KSKEGTSRPED 92

The following BLAST results are available for this feature:

BLAST of IVF0017571 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ54	5.3e-13	65.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VMZ4	1.2e-09	77.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BXZ2	2.1e-09	54.67	Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C3I9	1.1e-07	54.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGG5	1.1e-07	47.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0017571 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043535.1	2.12e-17	65.28	hypothetical protein E6C27_scaffold335G00290 [Cucumis melo var. makuwa]	[more]
KAA0067936.1	1.44e-14	77.78	hypothetical protein E6C27_scaffold138G001080 [Cucumis melo var. makuwa]	[more]
KAA0052868.1	1.01e-12	54.67	stress response protein NST1-like [Cucumis melo var. makuwa] >TYK04357.1 stress ...	[more]
KAA0067452.1	1.36e-11	47.89	hypothetical protein E6C27_scaffold40G001180 [Cucumis melo var. makuwa] >TYK0955...	[more]
KAA0037283.1	1.98e-11	54.93	hypothetical protein E6C27_scaffold68G00180 [Cucumis melo var. makuwa] >TYK05900...	[more]

BLAST of IVF0017571 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017571.2	IVF0017571.2	mRNA