IVF0008573 (gene) Melon (IVF77) v1

Overview


Name	IVF0008573
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L7a
Location	chr10: 24564220 .. 24564462 (+)
RNA-Seq Expression	IVF0008573
Synteny	IVF0008573

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAAACAGAGGTTGAAGATTCCACCATCTTCGAATCAGTTCACTAAGACCTTCGACAAAAATCTTGCGACTAACCTGTTCAAGATGCTTTTGAAATATAGGGCAGAGGACAAATCACAGAAAAGGTATAAGTGGAGTTCAGCAGGATTCTTGAAGTCATTTAAGGGCAATTTCAACAAGTACGACGACGACAATAAGAAGTGGGGAGGTGGAAATCATGGGCTCCAAGTCTTAGGCTAA

mRNA sequence

ATGCATAAACAGAGGTTGAAGATTCCACCATCTTCGAATCAGTTCACTAAGACCTTCGACAAAAATCTTGCGACTAACCTGTTCAAGATGCTTTTGAAATATAGGGCAGAGGACAAATCACAGAAAAGGTATAAGTGGAGTTCAGCAGGATTCTTGAAGTCATTTAAGGGCAATTTCAACAAGTACGACGACGACAATAAGAAGTGGGGAGGTGGAAATCATGGGCTCCAAGTCTTAGGCTAA

Coding sequence (CDS)

ATGCATAAACAGAGGTTGAAGATTCCACCATCTTCGAATCAGTTCACTAAGACCTTCGACAAAAATCTTGCGACTAACCTGTTCAAGATGCTTTTGAAATATAGGGCAGAGGACAAATCACAGAAAAGGTATAAGTGGAGTTCAGCAGGATTCTTGAAGTCATTTAAGGGCAATTTCAACAAGTACGACGACGACAATAAGAAGTGGGGAGGTGGAAATCATGGGCTCCAAGTCTTAGGCTAA

Protein sequence

MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFNKYDDDNKKWGGGNHGLQVLG

Homology

[Close]

BLAST of IVF0008573 vs. ExPASy Swiss-Prot
Match: P35685 (60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 44
           KQRLK+PP+ NQFT+T DKNLATNLFKMLLKYR EDK+ K+
Sbjct: 64  KQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKK 104

[Close]

BLAST of IVF0008573 vs. ExPASy Swiss-Prot
Match: P0DKK7 (60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 44
           KQRLK+PP+ NQFT+T DKNLATNLFKMLLKYR EDK+ K+
Sbjct: 64  KQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKK 104

[Close]

BLAST of IVF0008573 vs. ExPASy Swiss-Prot
Match: P49692 (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 44
           KQRLK+PP+ NQFTKT DKNLAT+LFK+LLKYR EDK+ K+
Sbjct: 63  KQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKK 103

[Close]

BLAST of IVF0008573 vs. ExPASy Swiss-Prot
Match: Q9LZH9 (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 44
           KQRLK+PP+ NQFTKT DKNLAT+LFK+LLKYR EDK+ K+
Sbjct: 62  KQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKK 102

[Close]

BLAST of IVF0008573 vs. ExPASy Swiss-Prot
Match: Q54ZD1 (60S ribosomal protein L7a OS=Dictyostelium discoideum OX=44689 GN=rpl7a PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 4   QRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 44
           +RLK+PP+ NQFT+ FDKN A +LFK+L KYR E+ S K+
Sbjct: 87  KRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEASVKK 126

[Close]

BLAST of IVF0008573 vs. ExPASy TrEMBL
Match: A0A5A7VJ69 (60S ribosomal protein L7a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00600 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.2e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 60
          MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN
Sbjct: 1  MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 60

Query: 61 KYDDDNKKWGGGNHGLQVLG 81
          KYDDDNKKWGGGNHGLQVLG
Sbjct: 61 KYDDDNKKWGGGNHGLQVLG 80

[Close]

BLAST of IVF0008573 vs. ExPASy TrEMBL
Match: A0A1S3CM74 (60S ribosomal protein L7a OS=Cucumis melo OX=3656 GN=LOC103502565 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.2e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 60
           MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN
Sbjct: 29  MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 88

Query: 61  KYDDDNKKWGGGNHGLQVLG 81
           KYDDDNKKWGGGNHGLQVLG
Sbjct: 89  KYDDDNKKWGGGNHGLQVLG 108

[Close]

BLAST of IVF0008573 vs. ExPASy TrEMBL
Match: A0A059CYF1 (60S ribosomal protein L7a OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B00159 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.3e-13
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKS----------QKRYKWSSAGFL 62
           +QRLK+PP+ NQFTKT DKNLATNLFKMLLKYR EDK           +   K   +  L
Sbjct: 111 RQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKKTASALCLTTVKNEDKLEFSKIL 170

Query: 63  KSFKGNFN-KYDDDNKKWGGGNHG 76
           ++ K NFN KYD+  KKWGGG  G
Sbjct: 171 EAIKANFNDKYDEYRKKWGGGIMG 194

[Close]

BLAST of IVF0008573 vs. ExPASy TrEMBL
Match: A0A6J1HZX8 (60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111469156 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 44
           KQRLK+PP+ NQFTKT DKNLATNLFKMLLKYR EDK+QKR
Sbjct: 63  KQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKR 103

[Close]

BLAST of IVF0008573 vs. ExPASy TrEMBL
Match: A0A5D3DB00 (60S ribosomal protein L7a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001180 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 44
           KQRLK+PP+ NQFTKT DKNLATNLFKMLLKYR EDK+QKR
Sbjct: 63  KQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKTQKR 103

[Close]

BLAST of IVF0008573 vs. NCBI nr
Match: KAA0065509.1 (60S ribosomal protein L7a-2-like isoform X2 [Cucumis melo var. makuwa] >TYK08749.1 60S ribosomal protein L7a-2-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (419), Expect = 1.29e-51
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 60
          MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN
Sbjct: 1  MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 60

Query: 61 KYDDDNKKWGGGNHGLQVLG 80
          KYDDDNKKWGGGNHGLQVLG
Sbjct: 61 KYDDDNKKWGGGNHGLQVLG 80

[Close]

BLAST of IVF0008573 vs. NCBI nr
Match: XP_008464759.1 (PREDICTED: uncharacterized protein LOC103502565 [Cucumis melo])

HSP 1 Score: 166 bits (419), Expect = 3.03e-51
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 60
           MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN
Sbjct: 29  MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 88

Query: 61  KYDDDNKKWGGGNHGLQVLG 80
           KYDDDNKKWGGGNHGLQVLG
Sbjct: 89  KYDDDNKKWGGGNHGLQVLG 108

[Close]

BLAST of IVF0008573 vs. NCBI nr
Match: KCW83216.1 (hypothetical protein EUGRSUZ_B00159 [Eucalyptus grandis])

HSP 1 Score: 81.6 bits (200), Expect = 8.41e-17
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKS----------QKRYKWSSAGFL 62
           +QRLK+PP+ NQFTKT DKNLATNLFKMLLKYR EDK           +   K   +  L
Sbjct: 111 RQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKKTASALCLTTVKNEDKLEFSKIL 170

Query: 63  KSFKGNFN-KYDDDNKKWGGG 72
           ++ K NFN KYD+  KKWGGG
Sbjct: 171 EAIKANFNDKYDEYRKKWGGG 191

[Close]

BLAST of IVF0008573 vs. NCBI nr
Match: XP_038875632.1 (60S ribosomal protein L7a-2-like [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 1.35e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 43
           KQRLK+PP+ NQFTKT DKNLATNLFKMLLKYR EDKSQKR
Sbjct: 63  KQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKSQKR 103

[Close]

BLAST of IVF0008573 vs. NCBI nr
Match: KAG7035588.1 (60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.8 bits (177), Expect = 3.16e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 3  KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 43
          KQRLK+PP+ NQFTKT DKNLATNLFKMLLKYR EDK+QKR
Sbjct: 53 KQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKR 93

[Close]

BLAST of IVF0008573 vs. TAIR 10
Match: AT2G47610.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-12
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 44
           KQRLK+PP+ NQFTKT DKNLAT+LFK+LLKYR EDK+ K+
Sbjct: 63  KQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKK 103

[Close]

BLAST of IVF0008573 vs. TAIR 10
Match: AT3G62870.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-12
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3   KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 44
           KQRLK+PP+ NQFTKT DKNLAT+LFK+LLKYR EDK+ K+
Sbjct: 62  KQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKK 102

The following BLAST results are available for this feature:

BLAST of IVF0008573 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P35685	2.2e-11	78.05	60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 ...	[more]
P0DKK7	2.2e-11	78.05	60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 ...	[more]
P49692	1.1e-10	75.61	60S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2	[more]
Q9LZH9	1.1e-10	75.61	60S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=1 SV=1	[more]
Q54ZD1	1.3e-06	60.00	60S ribosomal protein L7a OS=Dictyostelium discoideum OX=44689 GN=rpl7a PE=1 SV=...	[more]

BLAST of IVF0008573 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJ69	2.2e-38	100.00	60S ribosomal protein L7a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CM74	2.2e-38	100.00	60S ribosomal protein L7a OS=Cucumis melo OX=3656 GN=LOC103502565 PE=3 SV=1	[more]
A0A059CYF1	9.3e-13	55.95	60S ribosomal protein L7a OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B00159 PE=3 ...	[more]
A0A6J1HZX8	3.3e-10	85.37	60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111469156 PE=3 SV=1	[more]
A0A5D3DB00	3.3e-10	85.37	60S ribosomal protein L7a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of IVF0008573 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065509.1	1.29e-51	100.00	60S ribosomal protein L7a-2-like isoform X2 [Cucumis melo var. makuwa] >TYK08749...	[more]
XP_008464759.1	3.03e-51	100.00	PREDICTED: uncharacterized protein LOC103502565 [Cucumis melo]	[more]
KCW83216.1	8.41e-17	56.79	hypothetical protein EUGRSUZ_B00159 [Eucalyptus grandis]	[more]
XP_038875632.1	1.35e-13	87.80	60S ribosomal protein L7a-2-like [Benincasa hispida]	[more]
KAG7035588.1	3.16e-13	85.37	60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]

BLAST of IVF0008573 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47610.1	7.8e-12	75.61	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G62870.1	7.8e-12	75.61	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001921	Ribosomal protein L7A/L8	PRINTS	PR00882	RIBOSOMALL7A	coord: 5..24 score: 60.91 coord: 29..42 score: 51.95
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..61 e-value: 2.7E-11 score: 45.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008573.1	IVF0008573.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding