IVF0011050 (gene) Melon (IVF77) v1

Overview
NameIVF0011050
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr03: 19369210 .. 19370835 (-)
RNA-Seq ExpressionIVF0011050
SyntenyIVF0011050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAAAGACGTGTCGGAATGTGAAAGGAGAGAGCAAGGATTGTAAAAATGAAAACGAAGCAGAGGAAAAGAACCGGACATGCAAAATTCCAAACGGCAGGCAGCCCCCCAAGAGGTTTAACCGCGGTTAGAAGAGTTAACCAAACCAGGGTTAAGTACTGGGGATCGTGTTAAGTCTCCTCCTCCCTTGGGATTTTACTGTTTGTCTTTTGCATCTCAGGACCCACCATCCATTTTCTTCTTTCTCTCTCTAACATTCATAGAAAGAGGATAACAACAAAAGTCTCAGCACCGTCACTTCCTTTCTCTCTCATTCCCTCCCTCTCTCTCTTTCTTTTTTCTCTGCAGTTGATGAGTTTCAGCGGAGAAGGACGAGAAGAGTTTGAAATGGATTACGGAAGGTAAAATTTCAATTTCTGGAAATGATTTTACCGTAGTTTTGTAATATTTCTATGTGAATTTGATTAATGAAGCTTGAATTTGCGAGAGGAGTATAGCCTTATTATGGTTGTGGTTTGCTCTGTTTTTTTTTATTTTTTTATTTAATTGATTTCGTTTGTGTTTATCATCTTGCTGTAGTTATTGAATCCGTAGTTTGCGGTTGGAGGTTTTTGGTTTTCTTTTTCGCTTTTCTGAATTGTTTGTTATCGAGTGAGGTATGCGTATTTTCGGCATGTTGTTTTGAAGAACTACAGGCGTTTCGTTTAGTTATGTATTTTGCTGACTTTCTTTATAAGTTCCGCCACTTGTTTTATTCTTCAACGTCTTTGATCTTTACGTTACTTGTGGATTATCGTCGTTTCTTTCCATTTTTTTCGGGGATGAGATTTTGATTGACTCCGAGTTTCTCGATCTAAAGGCTGCTGAGGTCGTCTTCTTTTTGTCAGTAAAGCGAAGAGAGTTTCAGTCGGCGTGAATATAAATTCATGTAAGAGTGTTAAGCCTTTATCTCTGTTTTTGGTTATAAAAGTTAGTTTAAGTTTTGCTTTAGAGACGGAGAATTTTGCTGGAAATTCTTTGGCGAAGATTATACGCAGATCGAACGTGGCGTTTCTTTCACGCAGAGTTTCAAATCTTGGTGTTGAGGGTATGGATTGGAACCGAATAATTAGGAACGCTTGAATTACTTGCAATCTGATATTCATATTGATTTCTCCTCCTTTTTTTGACGTTTAATTTACATCTTGTAATAATTAAAATTTGAAACTTTTTTATATTATCTTCTGATTTTCTTTCTATTATATAATATATAGTTTCTGTATCTTTTGTTCTTTATTAAGTGATTAAATGACAATTTCTCGTCTAGTATGGCTGTTTTTCTTTCTTTCCCCTGCTGAAATATATATATTTTATAGGTTTAATTCGCTTGGCTTATAACCGAGTGTTTCTTCTACGCTTTGTTTATTTTATCTGATGAGTTTGACTTTTTCATTTATTTATTTATTATATTTAAGGGTTTGTATTGGAGTCATAACCATTAATTCTAAGTAATCCTGCTTCTAGAGGTAGCATTTAAGTTTTTAACTAACTATTGATTGTTAATATTTTGACAGGATATCGTGAATGATCAATTTTCTTGGGATGTTTCACCAGAACTTGAAATTCAGTGGCTCCTAAAATAA

mRNA sequence

ATGAGAAAAAAGACGTGTCGGAATGTGAAAGGAGAGAGCAAGGATTGTAAAAATGAAAACGAAGCAGAGGAAAAGAACCGGACATGCAAAATTCCAAACGGCAGGCAGCCCCCCAAGAGGTTTAACCGCGTTATTGAATCCGTAGTTTGCGGTTGGAGGTTTTTGGTTTTCTTTTTCGCTTTTCTGAATTGTTTGTTATCGAGTGAGGATATCGTGAATGATCAATTTTCTTGGGATGTTTCACCAGAACTTGAAATTCAGTGGCTCCTAAAATAA

Coding sequence (CDS)

ATGAGAAAAAAGACGTGTCGGAATGTGAAAGGAGAGAGCAAGGATTGTAAAAATGAAAACGAAGCAGAGGAAAAGAACCGGACATGCAAAATTCCAAACGGCAGGCAGCCCCCCAAGAGGTTTAACCGCGTTATTGAATCCGTAGTTTGCGGTTGGAGGTTTTTGGTTTTCTTTTTCGCTTTTCTGAATTGTTTGTTATCGAGTGAGGATATCGTGAATGATCAATTTTCTTGGGATGTTTCACCAGAACTTGAAATTCAGTGGCTCCTAAAATAA

Protein sequence

MRKKTCRNVKGESKDCKNENEAEEKNRTCKIPNGRQPPKRFNRVIESVVCGWRFLVFFFAFLNCLLSSEDIVNDQFSWDVSPELEIQWLLK
Homology
[Close]
BLAST of IVF0011050 vs. ExPASy TrEMBL
Match: A0A0A0KB61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G051510 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.8e-32
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 9  VKGESKDCKNENEAEEKNRTCKIPNGRQPPKRFNRVIESVVCGWRFLVFFFAFLNCLLSS 68
          +KGES+DCKNE EAEEKNRTCKIPNG  P     RVIESVVCGWRFLV FFAFLNCLLS+
Sbjct: 1  MKGESRDCKNEKEAEEKNRTCKIPNGSPP-----RVIESVVCGWRFLVIFFAFLNCLLST 60

Query: 69 EDIVNDQFSWDVSPELEIQWLLK 92
          EDIVNDQFSWDVSPELEIQWLLK
Sbjct: 61 EDIVNDQFSWDVSPELEIQWLLK 78

[Close]
BLAST of IVF0011050 vs. NCBI nr
Match: KAE8646646.1 (hypothetical protein Csa_005286 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 4.05e-07
Identity = 27/40 (67.50%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 52 WRFLVFFFAFLNCLLSSEDIVNDQFSWDVSPELEIQWLLK 91
          WRF    F     +L   DIVNDQFSWDVSPELEIQWLLK
Sbjct: 30 WRFFHAEFQ----ILVLRDIVNDQFSWDVSPELEIQWLLK 65

The following BLAST results are available for this feature:
BLAST of IVF0011050 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB617.8e-3285.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G051510 PE=4 SV=1[more]
BLAST of IVF0011050 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646646.14.05e-0767.50hypothetical protein Csa_005286 [Cucumis sativus][more]
BLAST of IVF0011050 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011050.1IVF0011050.1mRNA