IVF0012779 (gene) Melon (IVF77) v1

Overview


Name	IVF0012779
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RING-H2 finger protein ATL74-like
Location	chr04: 32099503 .. 32099997 (+)
RNA-Seq Expression	IVF0012779
Synteny	IVF0012779

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAAAACTACGACGGGGGCTTACGGAAGCGCAGGGGAACAGGACGAGCAATTGGTCTAATTATGTGGGAGAAATTAATTTCGATGTGCACATGACACTAACACTGGCGGCTTTATTATGTTTACTCATTGGAGCGGTTGGAGTGAACTCTATAGTACGCTGCTTTTTGCGATGTAGGTATAGCTTTGAGACGGAGAGGGCAGAGGAGGACGCTAGCGCACAGGGGCTTAAGAAGCAAGAACTCGCTCTGATTCCGATTGGGGTCTATGGAAGTGATGCAAATATTAAGAGCACAGATTGCGCAATTTGCCTTGCCCAGTTCGAGGTGGGCGACAAGCTCAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACTTGGCTCTTGTCTAATTTCTCTTGCCCCAATTGCCGCCAATCCGTCAAACCCCCTCATACTTCACCCCACATTGTTGTGATCATAGACAGTGTAAATTAG

mRNA sequence

ATGGATCAAAAACTACGACGGGGGCTTACGGAAGCGCAGGGGAACAGGACGAGCAATTGGTCTAATTATGTGGGAGAAATTAATTTCGATGTGCACATGACACTAACACTGGCGGCTTTATTATGTTTACTCATTGGAGCGGTTGGAGTGAACTCTATAGTACGCTGCTTTTTGCGATGTAGGTATAGCTTTGAGACGGAGAGGGCAGAGGAGGACGCTAGCGCACAGGGGCTTAAGAAGCAAGAACTCGCTCTGATTCCGATTGGGGTCTATGGAAGTGATGCAAATATTAAGAGCACAGATTGCGCAATTTGCCTTGCCCAGTTCGAGGTGGGCGACAAGCTCAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACTTGGCTCTTGTCTAATTTCTCTTGCCCCAATTGCCGCCAATCCGTCAAACCCCCTCATACTTCACCCCACATTGTTGTGATCATAGACAGTGTAAATTAG

Coding sequence (CDS)

ATGGATCAAAAACTACGACGGGGGCTTACGGAAGCGCAGGGGAACAGGACGAGCAATTGGTCTAATTATGTGGGAGAAATTAATTTCGATGTGCACATGACACTAACACTGGCGGCTTTATTATGTTTACTCATTGGAGCGGTTGGAGTGAACTCTATAGTACGCTGCTTTTTGCGATGTAGGTATAGCTTTGAGACGGAGAGGGCAGAGGAGGACGCTAGCGCACAGGGGCTTAAGAAGCAAGAACTCGCTCTGATTCCGATTGGGGTCTATGGAAGTGATGCAAATATTAAGAGCACAGATTGCGCAATTTGCCTTGCCCAGTTCGAGGTGGGCGACAAGCTCAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACTTGGCTCTTGTCTAATTTCTCTTGCCCCAATTGCCGCCAATCCGTCAAACCCCCTCATACTTCACCCCACATTGTTGTGATCATAGACAGTGTAAATTAG

Protein sequence

MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDSVN

Homology

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BLAST of IVF0012779 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-33
Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 14  GNRTS---NWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAE 73
           GN TS       Y  ++NFD +M + LAALLC LI A+G+NSI+RC +RC +   +  A 
Sbjct: 12  GNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAA 71

Query: 74  ED-ASAQGLKKQELALIPIGVYGS-DANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLT 133
              A   GLKK+EL   P+  YGS +  I +T+CAICL +F  G+++R+LP CNH FH++
Sbjct: 72  GTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMS 131

Query: 134 CIDTWLLSNFSCPNCRQSVKPPHTS 154
           CIDTWL+S+ SCPNCR S+   H +
Sbjct: 132 CIDTWLVSHSSCPNCRHSLIEVHVA 156

[Close]

BLAST of IVF0012779 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-32
Identity = 77/167 (46.11%), Postives = 100/167 (59.88%), Query Frame = 0


Query: 7   RGLTEAQGNRTSNWS----NYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRY 66
           R L E Q N  +N +      + +  FD +M + LAALLC LI A+ +NS +RC LR   
Sbjct: 3   RLLLEPQANAPANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITR 62

Query: 67  SFETERAEEDAS-----------AQGLKKQELALIPIGVYGSD-ANIKSTDCAICLAQFE 126
            F ++    +AS           A GLKKQ L  IP+G+YGS   ++K+T+C ICL  FE
Sbjct: 63  RFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFE 122

Query: 127 VGDKLRMLPICNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIV 158
            G+K+R+LP CNHGFH+ CIDTWLLS  SCP CRQS+     SP  V
Sbjct: 123 DGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAV 169

[Close]

BLAST of IVF0012779 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.9e-32
Identity = 66/137 (48.18%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 14  GNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAEEDA 73
           G+  SN  N     + D HM + LAALLC LI A+G+NS++RC LRC   F       D 
Sbjct: 25  GDSVSNNKNIA---SMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDT 84

Query: 74  S---AQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCI 133
           +   A+G+KK+ L +IP+  Y  +  +K+T+C ICL  F  G+ +R+LP CNHGFH+ CI
Sbjct: 85  NANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCI 144

Query: 134 DTWLLSNFSCPNCRQSV 148
           DTWLLS+ SCP CRQS+
Sbjct: 145 DTWLLSHSSCPTCRQSL 158

[Close]

BLAST of IVF0012779 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-24
Identity = 52/130 (40.00%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 21  SNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAEEDASAQ---- 80
           S YVG+ NFD ++ + L+ LLC L+ ++G+NSI+RC LRC     +E   ++   +    
Sbjct: 44  SPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNT 103

Query: 81  GLKKQELALIPIGVYGSDANIK--STDCAICLAQFEVGDKLRMLPICNHGFHLTCIDTWL 140
           G+K++ L       Y ++ N+    T+CAICL++F   +++++LP C+HGFH+ CID WL
Sbjct: 104 GVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWL 163

Query: 141 LSNFSCPNCR 145
            S+ SCP CR
Sbjct: 164 SSHSSCPTCR 173

[Close]

BLAST of IVF0012779 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-20
Identity = 54/124 (43.55%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 29  FDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRY-----SFETERAEEDASAQGLKKQEL 88
           F+  + L LA LLC L   +G+ ++ RC    R      S +T      A+ +GLKK+ L
Sbjct: 24  FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVL 83

Query: 89  ALIPIGVYGSDA--NIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCIDTWLLSNFSCP 146
             +P   Y  D+    K  +CAICL +F  GD+LR+LP C HGFH++CIDTWL S+ SCP
Sbjct: 84  RSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCP 143

[Close]

BLAST of IVF0012779 vs. ExPASy TrEMBL
Match: A0A1S3B8C4 (RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103487125 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.3e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRC 60
           MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRC
Sbjct: 1   MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRC 60

Query: 61  RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI 120
           RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI
Sbjct: 61  RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI 120

Query: 121 CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDSVN 165
           CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDSVN
Sbjct: 121 CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDSVN 164

[Close]

BLAST of IVF0012779 vs. ExPASy TrEMBL
Match: A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.1e-88
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRC 60
           MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLR 
Sbjct: 1   MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRR 60

Query: 61  RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI 120
           RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI
Sbjct: 61  RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI 120

Query: 121 CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDS 163
           CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDS
Sbjct: 121 CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDS 162

[Close]

BLAST of IVF0012779 vs. ExPASy TrEMBL
Match: A0A6J1I6E6 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.0e-46
Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 1   MDQKLRRGL--TEA-QGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCF 60
           MD  L R L  TEA QGN T+N S YVGE+N D HM + LAALL  LIGA+GVN++VRC 
Sbjct: 1   MDPNLPRRLLATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCV 60

Query: 61  LRCRYSFETERAEEDA---SAQGLKKQELALIPIGVYGSD-ANIKSTDCAICLAQFEVGD 120
           L   + F TER EE A   +A GLKK+EL+ IP+GVYGSD A IK TDCAICL +FEVGD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KLRMLPICNHGFHLTCIDTWLLSNFSCPNCRQSVKPP 151
           K+RMLPICNHGFH+ CIDTWLLS+ SCPNCR S+  P
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLP 157

[Close]

BLAST of IVF0012779 vs. ExPASy TrEMBL
Match: A0A6J1EVU3 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.2e-43
Identity = 104/188 (55.32%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 1   MDQKLRRGLTEAQ---GNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCF 60
           MD  L R L   +   GN T+N S YVGE+N D HM + LAALL  LIGA+GVNS+VRC 
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 61  LRCRYSFETERAEEDA---SAQGLKKQELALIPIGVYGSD-ANIKSTDCAICLAQFEVGD 120
           L   + F  ER EE A   +A GLKK+EL+ IP+GVYGSD A IK TDCAICL +FEVGD
Sbjct: 61  LSLGFRFR-ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KLRMLPICNHGFHLTCIDTWLLSNFSCPNCRQS--------------VKPPHTSP----- 162
           K+RMLP CNHGFH+ CIDTWLLS+ SCPNCR S              V PP   P     
Sbjct: 121 KVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSAS 180

[Close]

BLAST of IVF0012779 vs. ExPASy TrEMBL
Match: A0A0A0L9Q6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G728120 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.9e-42
Identity = 86/106 (81.13%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 27  INFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAEEDASAQGLKKQELALI 86
           +NFDVHM + LAALLC LIGAVGVNSI+RC LRCRYSFE ERA+E A   GLKK+E+ALI
Sbjct: 1   MNFDVHMGVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALI 60

Query: 87  PIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCIDT 133
            I VYG+DANIK+TDCAICLAQF+VGDKLRMLPICNHGFHLTCIDT
Sbjct: 61  SIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106

[Close]

BLAST of IVF0012779 vs. NCBI nr
Match: XP_008443568.1 (PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo])

HSP 1 Score: 341 bits (874), Expect = 2.53e-118
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRC 60
           MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRC
Sbjct: 1   MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRC 60

Query: 61  RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI 120
           RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI
Sbjct: 61  RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI 120

Query: 121 CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDSVN 164
           CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDSVN
Sbjct: 121 CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDSVN 164

[Close]

BLAST of IVF0012779 vs. NCBI nr
Match: KAA0044224.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 332 bits (852), Expect = 1.04e-112
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRC 60
           MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLR 
Sbjct: 1   MDQKLRRGLTEAQGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRR 60

Query: 61  RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI 120
           RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI
Sbjct: 61  RYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPI 120

Query: 121 CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDS 162
           CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDS
Sbjct: 121 CNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIVVIIDS 162

[Close]

BLAST of IVF0012779 vs. NCBI nr
Match: XP_023540727.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196 bits (497), Expect = 1.51e-60
Identity = 106/184 (57.61%), Postives = 125/184 (67.93%), Query Frame = 0


Query: 1   MDQKLRRGLTEAQ---GNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCF 60
           MD  L R L   +   GN T+N S YVGE+N D HM + LAALL  LIGA+GVNS+VRC 
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 61  LRCRYSFETERAEEDAS---AQGLKKQELALIPIGVYGSD-ANIKSTDCAICLAQFEVGD 120
           L   + F TER EE A+   A GLKK+EL+ IP+GVYGSD A IK TDCAICL +FEVGD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KLRMLPICNHGFHLTCIDTWLLSNFSCPNCRQS--------------VKPPH--TSPHIV 161
           K+RMLPICNHGFH+ CIDTWLLS+ SCPNCR S              V PP    S H+V
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQGSASSHVV 180

[Close]

BLAST of IVF0012779 vs. NCBI nr
Match: XP_022971293.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 195 bits (495), Expect = 3.46e-60
Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 1   MDQKLRRGL--TEA-QGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCF 60
           MD  L R L  TEA QGN T+N S YVGE+N D HM + LAALL  LIGA+GVN++VRC 
Sbjct: 1   MDPNLPRRLLATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCV 60

Query: 61  LRCRYSFETERAEEDAS---AQGLKKQELALIPIGVYGSD-ANIKSTDCAICLAQFEVGD 120
           L   + F TER EE A+   A GLKK+EL+ IP+GVYGSD A IK TDCAICL +FEVGD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KLRMLPICNHGFHLTCIDTWLLSNFSCPNCRQSVKPP 150
           K+RMLPICNHGFH+ CIDTWLLS+ SCPNCR S+  P
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLP 157

[Close]

BLAST of IVF0012779 vs. NCBI nr
Match: XP_022930638.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027864.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186 bits (471), Expect = 1.48e-56
Identity = 104/188 (55.32%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 1   MDQKLRRGLTEAQ---GNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCF 60
           MD  L R L   +   GN T+N S YVGE+N D HM + LAALL  LIGA+GVNS+VRC 
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 61  LRCRYSFETERAEEDAS---AQGLKKQELALIPIGVYGSD-ANIKSTDCAICLAQFEVGD 120
           L   + F  ER EE A+   A GLKK+EL+ IP+GVYGSD A IK TDCAICL +FEVGD
Sbjct: 61  LSLGFRFR-ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KLRMLPICNHGFHLTCIDTWLLSNFSCPNCRQS--------------VKPPHTSP----- 161
           K+RMLP CNHGFH+ CIDTWLLS+ SCPNCR S              V PP   P     
Sbjct: 121 KVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSAS 180

[Close]

BLAST of IVF0012779 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-34
Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 14  GNRTS---NWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAE 73
           GN TS       Y  ++NFD +M + LAALLC LI A+G+NSI+RC +RC +   +  A 
Sbjct: 12  GNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAA 71

Query: 74  ED-ASAQGLKKQELALIPIGVYGS-DANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLT 133
              A   GLKK+EL   P+  YGS +  I +T+CAICL +F  G+++R+LP CNH FH++
Sbjct: 72  GTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMS 131

Query: 134 CIDTWLLSNFSCPNCRQSVKPPHTS 154
           CIDTWL+S+ SCPNCR S+   H +
Sbjct: 132 CIDTWLVSHSSCPNCRHSLIEVHVA 156

[Close]

BLAST of IVF0012779 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-33
Identity = 77/167 (46.11%), Postives = 100/167 (59.88%), Query Frame = 0


Query: 7   RGLTEAQGNRTSNWS----NYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRY 66
           R L E Q N  +N +      + +  FD +M + LAALLC LI A+ +NS +RC LR   
Sbjct: 3   RLLLEPQANAPANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITR 62

Query: 67  SFETERAEEDAS-----------AQGLKKQELALIPIGVYGSD-ANIKSTDCAICLAQFE 126
            F ++    +AS           A GLKKQ L  IP+G+YGS   ++K+T+C ICL  FE
Sbjct: 63  RFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFE 122

Query: 127 VGDKLRMLPICNHGFHLTCIDTWLLSNFSCPNCRQSVKPPHTSPHIV 158
            G+K+R+LP CNHGFH+ CIDTWLLS  SCP CRQS+     SP  V
Sbjct: 123 DGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAV 169

[Close]

BLAST of IVF0012779 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 5.6e-33
Identity = 66/137 (48.18%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 14  GNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAEEDA 73
           G+  SN  N     + D HM + LAALLC LI A+G+NS++RC LRC   F       D 
Sbjct: 25  GDSVSNNKNIA---SMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDT 84

Query: 74  S---AQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCI 133
           +   A+G+KK+ L +IP+  Y  +  +K+T+C ICL  F  G+ +R+LP CNHGFH+ CI
Sbjct: 85  NANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCI 144

Query: 134 DTWLLSNFSCPNCRQSV 148
           DTWLLS+ SCP CRQS+
Sbjct: 145 DTWLLSHSSCPTCRQSL 158

[Close]

BLAST of IVF0012779 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 52/130 (40.00%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 21  SNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAEEDASAQ---- 80
           S YVG+ NFD ++ + L+ LLC L+ ++G+NSI+RC LRC     +E   ++   +    
Sbjct: 44  SPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNT 103

Query: 81  GLKKQELALIPIGVYGSDANIK--STDCAICLAQFEVGDKLRMLPICNHGFHLTCIDTWL 140
           G+K++ L       Y ++ N+    T+CAICL++F   +++++LP C+HGFH+ CID WL
Sbjct: 104 GVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWL 163

Query: 141 LSNFSCPNCR 145
            S+ SCP CR
Sbjct: 164 SSHSSCPTCR 173

[Close]

BLAST of IVF0012779 vs. TAIR 10
Match: AT1G76410.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-21
Identity = 54/124 (43.55%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 29  FDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRY-----SFETERAEEDASAQGLKKQEL 88
           F+  + L LA LLC L   +G+ ++ RC    R      S +T      A+ +GLKK+ L
Sbjct: 24  FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVL 83

Query: 89  ALIPIGVYGSDA--NIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCIDTWLLSNFSCP 146
             +P   Y  D+    K  +CAICL +F  GD+LR+LP C HGFH++CIDTWL S+ SCP
Sbjct: 84  RSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCP 143

The following BLAST results are available for this feature:

BLAST of IVF0012779 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	1.4e-33	48.28	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9SG96	4.7e-32	46.11	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	7.9e-32	48.18	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q6NQG7	1.6e-24	40.00	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q8LC69	2.4e-20	43.55	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]

BLAST of IVF0012779 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8C4	2.3e-90	100.00	RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103487125 PE=4 S...	[more]
A0A5A7TM08	8.1e-88	99.38	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1I6E6	2.0e-46	65.61	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE...	[more]
A0A6J1EVU3	1.2e-43	55.32	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 ...	[more]
A0A0A0L9Q6	3.9e-42	81.13	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G728120 P...	[more]

BLAST of IVF0012779 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443568.1	2.53e-118	100.00	PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo]	[more]
KAA0044224.1	1.04e-112	99.38	RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa]	[more]
XP_023540727.1	1.51e-60	57.61	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971293.1	3.46e-60	65.61	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]
XP_022930638.1	1.48e-56	55.32	RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 fin...	[more]

BLAST of IVF0012779 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	1.0e-34	48.28	RING/U-box superfamily protein	[more]
AT3G10910.1	3.3e-33	46.11	RING/U-box superfamily protein	[more]
AT5G05280.1	5.6e-33	48.18	RING/U-box superfamily protein	[more]
AT1G49230.1	1.1e-25	40.00	RING/U-box superfamily protein	[more]
AT1G76410.1	1.7e-21	43.55	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 102..143 e-value: 1.3E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..144 e-value: 1.6E-12 score: 47.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 102..144 score: 11.559839
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 60..151 e-value: 5.0E-20 score: 73.0
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 12..148
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 12..148
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 102..144 e-value: 3.33933E-16 score: 66.4813
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 101..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012779.2	IVF0012779.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane