IVF0008543 (gene) Melon (IVF77) v1

Overview


Name	IVF0008543
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr04: 17161686 .. 17162386 (+)
RNA-Seq Expression	IVF0008543
Synteny	IVF0008543

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGCCTCTTGGCTGGCAACGGCCACCAAATCAGCGGCAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGAAACAATACCTTCCAAGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACACCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCAATACCTTCAACCGCATTGCTGCGTCCCTCTGGGCCAACAACTCCAAATAAGCGTGCTGCTTCCCCGACCGCTTCTTCCTCAAGCTCTGCAATTCCGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCTACGAAGTCTATAATCAAATATTTCCTCACGAGTTTAACTTCTTACCGGAGGATCTTGCAAAGACTAGGACCTTCTACAAGTACATTTTAGTTGACTCAAAATCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTCAATCTTACTAG

mRNA sequence

ATGGAACCGCCTCTTGGCTGGCAACGGCCACCAAATCAGCGGCAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGAAACAATACCTTCCAAGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACACCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCAATACCTTCAACCGCATTGCTGCCGTGCTGCTTCCCCGACCGCTTCTTCCTCAAGCTCTGCAATTCCGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCTACGAAGTCTATAATCAAATATTTCCTCACGAGTTTAACTTCTTACCGGAGGATCTTGCAAAGACTAGGACCTTCTACAAGTACATTTTAGTTGACTCAAAATCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTCAATCTTACTAG

Coding sequence (CDS)

ATGGAACCGCCTCTTGGCTGGCAACGGCCACCAAATCAGCGGCAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGAAACAATACCTTCCAAGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACACCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCAATACCTTCAACCGCATTGCTGCCGTGCTGCTTCCCCGACCGCTTCTTCCTCAAGCTCTGCAATTCCGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCTACGAAGTCTATAATCAAATATTTCCTCACGAGTTTAACTTCTTACCGGAGGATCTTGCAAAGACTAGGACCTTCTACAAGTACATTTTAGTTGACTCAAAATCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTCAATCTTACTAG

Protein sequence

MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCCRAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY

Homology

[Close]

BLAST of IVF0008543 vs. ExPASy TrEMBL
Match: A0A5A7U3G5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.2e-95
Identity = 199/233 (85.41%), Postives = 202/233 (86.70%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP G Q P NQRQSPQSNQNNSPQRPPQTI SSSET PSKGKPSTQSSAPS MSAENY
Sbjct: 1   MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGKPSTQSSAPSLMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQPH-----CCRAASPTASSSS 120
            MDLQFEQVSRR QG AQRTLTIQSDSSSLP       L+P        RAASPTASSS 
Sbjct: 61  AMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPTASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAIPRNPSSYSQIVRPKVFQPRP INGYFTKTTMVDLTIEPEFDGPSV+EV NQIFPHEF
Sbjct: 121 SAIPRNPSSYSQIVRPKVFQPRPSINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 224
           NFLPEDL KT TFY+YILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLTKTMTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0008543 vs. ExPASy TrEMBL
Match: A0A5A7U7T9 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-91
Identity = 192/233 (82.40%), Postives = 197/233 (84.55%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP G QR PNQRQSPQSNQNNSPQR PQT+ASSSET PS+GKPS QSSA SPMSAENY
Sbjct: 1   MEPPPGRQRSPNQRQSPQSNQNNSPQR-PQTVASSSETTPSRGKPSAQSSAHSPMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC----------RAASPTASSSS 120
            MDLQFEQVSRRRQG AQRTLTIQSDSSSLP                  R ASP ASSS 
Sbjct: 61  AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLCPSGPTTPNKRVASPAASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAI RNPSSYSQIVR KVFQPRPPINGYFTKTTMVDLTIEPEFDGP V+EV NQIFPHEF
Sbjct: 121 SAISRNPSSYSQIVRLKVFQPRPPINGYFTKTTMVDLTIEPEFDGPFVHEVCNQIFPHEF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 224
           NFLPEDL+KTRTFY+YILVDSKSAEITHVPDKNDPSKIIYSK RIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKFRIFRVLTPSY 232

[Close]

BLAST of IVF0008543 vs. ExPASy TrEMBL
Match: A0A5D3DX32 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003460 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 5.0e-88
Identity = 184/233 (78.97%), Postives = 199/233 (85.41%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP   QRPPN+RQ P +NQNNS  +PPQ++ASSS T PS+ +  +QSSAPSPMSAENY
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQPH-----CCRAASPTASSSS 120
            MDLQFEQVSRRRQG A+RTLTIQSDSSSLP     + L+P        RAASP ASSS 
Sbjct: 61  AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTELLRPSGPTTPNKRAASPGASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV +QIFPH F
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 224
           NFLPEDL+KTRTFY+YILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0008543 vs. ExPASy TrEMBL
Match: A0A5A7SQU5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001670 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.1e-87
Identity = 184/233 (78.97%), Postives = 198/233 (84.98%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP   QRPPN+RQ P +NQNNS  +PPQ++ASSS T PS+ +  +QSSAPSPMSAENY
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQPH-----CCRAASPTASSSS 120
            MDLQFEQVSRRRQG A+RTLTIQSDSSSLP       L+P        RAASP ASSS 
Sbjct: 61  AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPGASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV +QIFPH F
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 224
           NFLPEDL+KTRTFY+YILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0008543 vs. ExPASy TrEMBL
Match: A0A5D3D2Q6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00560 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.5e-87
Identity = 182/233 (78.11%), Postives = 195/233 (83.69%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP G QRP NQRQ  Q++QN++PQRPPQ++A+SS T PS+ K   QSSAPSPMSAENY
Sbjct: 1   MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC----------RAASPTASSSS 120
            MDLQFEQVSRRRQG AQRTLTIQSDSSSLP   +              RAASP ASSS 
Sbjct: 61  AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAIPRNPSSYSQIVRP +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV NQIFPH F
Sbjct: 121 SAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHGF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 224
           NFLPEDL+KTRTFY+YILVDSKSA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0008543 vs. NCBI nr
Match: KAA0050443.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 353 bits (907), Expect = 8.79e-118
Identity = 199/233 (85.41%), Postives = 202/233 (86.70%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP G Q P NQRQSPQSNQNNSPQRPPQTI SSSET PSKGKPSTQSSAPS MSAENY
Sbjct: 1   MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGKPSTQSSAPSLMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQY-----LQPHCC-----RAASPTASSSS 120
            MDLQFEQVSRR QG AQRTLTIQSDSSSLP       L+P        RAASPTASSS 
Sbjct: 61  AMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPTASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAIPRNPSSYSQIVRPKVFQPRP INGYFTKTTMVDLTIEPEFDGPSV+EV NQIFPHEF
Sbjct: 121 SAIPRNPSSYSQIVRPKVFQPRPSINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 223
           NFLPEDL KT TFY+YILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLTKTMTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0008543 vs. NCBI nr
Match: KAA0050447.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 342 bits (876), Expect = 2.18e-114
Identity = 192/233 (82.40%), Postives = 197/233 (84.55%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP G QR PNQRQSPQSNQNNSPQRP QT+ASSSET PS+GKPS QSSA SPMSAENY
Sbjct: 1   MEPPPGRQRSPNQRQSPQSNQNNSPQRP-QTVASSSETTPSRGKPSAQSSAHSPMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC----------RAASPTASSSS 120
            MDLQFEQVSRRRQG AQRTLTIQSDSSSLP                  R ASP ASSS 
Sbjct: 61  AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLCPSGPTTPNKRVASPAASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAI RNPSSYSQIVR KVFQPRPPINGYFTKTTMVDLTIEPEFDGP V+EV NQIFPHEF
Sbjct: 121 SAISRNPSSYSQIVRLKVFQPRPPINGYFTKTTMVDLTIEPEFDGPFVHEVCNQIFPHEF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 223
           NFLPEDL+KTRTFY+YILVDSKSAEITHVPDKNDPSKIIYSK RIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKFRIFRVLTPSY 232

[Close]

BLAST of IVF0008543 vs. NCBI nr
Match: TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 330 bits (845), Expect = 2.09e-108
Identity = 184/233 (78.97%), Postives = 199/233 (85.41%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP   QRPPN+RQ P +NQNNS  +PPQ++ASSS T PS+ +  +QSSAPSPMSAENY
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLP-----QYLQPHCC-----RAASPTASSSS 120
            MDLQFEQVSRRRQG A+RTLTIQSDSSSLP     + L+P        RAASP ASSS 
Sbjct: 61  AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTELLRPSGPTTPNKRAASPGASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV +QIFPH F
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 223
           NFLPEDL+KTRTFY+YILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0008543 vs. NCBI nr
Match: KAA0032918.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 328 bits (842), Expect = 5.94e-108
Identity = 184/233 (78.97%), Postives = 198/233 (84.98%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP   QRPPN+RQ P +NQNNS  +PPQ++ASSS T PS+ +  +QSSAPSPMSAENY
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQY-----LQPHCC-----RAASPTASSSS 120
            MDLQFEQVSRRRQG A+RTLTIQSDSSSLP       L+P        RAASP ASSS 
Sbjct: 61  AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPGASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV +QIFPH F
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 223
           NFLPEDL+KTRTFY+YILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0008543 vs. NCBI nr
Match: TYK17808.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 327 bits (839), Expect = 1.69e-107
Identity = 182/233 (78.11%), Postives = 195/233 (83.69%), Query Frame = 0


Query: 1   MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENY 60
           MEPP G QRP NQRQ  Q++QN++PQRPPQ++A+SS T PS+ K   QSSAPSPMSAENY
Sbjct: 1   MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60

Query: 61  TMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPQYLQPHCC----------RAASPTASSSS 120
            MDLQFEQVSRRRQG AQRTLTIQSDSSSLP   +              RAASP ASSS 
Sbjct: 61  AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSSR 120

Query: 121 SAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEF 180
           SAIPRNPSSYSQIVRP +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EV NQIFPH F
Sbjct: 121 SAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHGF 180

Query: 181 NFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY 223
           NFLPEDL+KTRTFY+YILVDSKSA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSY 233

The following BLAST results are available for this feature:

BLAST of IVF0008543 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0008543 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3G5	3.2e-95	85.41	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE...	[more]
A0A5A7U7T9	1.3e-91	82.40	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE...	[more]
A0A5D3DX32	5.0e-88	78.97	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SQU5	1.1e-87	78.97	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D2Q6	2.5e-87	78.11	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of IVF0008543 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050443.1	8.79e-118	85.41	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050447.1	2.18e-114	82.40	polyprotein [Cucumis melo var. makuwa]	[more]
TYK28082.1	2.09e-108	78.97	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0032918.1	5.94e-108	78.97	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK17808.1	1.69e-107	78.11	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0008543 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008543.1	IVF0008543.1	mRNA