IVF0006343 (gene) Melon (IVF77) v1

Overview
NameIVF0006343
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionAuxin-responsive protein
Locationchr04: 3168951 .. 3169345 (-)
RNA-Seq ExpressionIVF0006343
SyntenyIVF0006343
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAATGATTCGATTGTAAAAGATAAAGGAAAAGAATTTGATGTTCATGTGATCTCTTCAGAATATTTTGATGAAAATTCTGATTACATTTTACATAATATTCGTTTTCTTTTAAGGCTTTCAAAAATGTGTAAGAAAATCAATGGCGGATTGGATCGAGCTGTACAATATGCTTCCCCTGCAAATGCCAGCTTTTCATGTCAGTTACATCTCTTTTGGGGTCTACAAGGCTTCATCCATGCAGGCTTCGACATTGACACGACCAATTCAATCGATTTCGTCCCTCCAATGGCCGCTCGCTGCCGAGAACATCAGTTTAATTGCCCTAATTTTTGATGTCACGTGGACTTCAATTGAACTTGCCCGCTCGGTTCTAGACAATTTCTTGCCCTGA

mRNA sequence

CAAAAATGATTCGATTGTAAAAGATAAAGGAAAAGAATTTGATGTTCATGTGATCTCTTCAGAATATTTTGATGAAAATTCTGATTACATTTTACATAATATTCGTTTTCTTTTAAGGCTTTCAAAAATGTGTAAGAAAATCAATGGCGGATTGGATCGAGCTGTACAATATGCTTCCCCTGCAAATGCCAGCTTTTCATGTCAGTTACATCTCTTTTGGGGTCTACAAGGCTTCATCCATGCAGGCTTCGACATTGACACGACCAATTCAATCGATTTCGTCCCTCCAATGGCCGCTCGCTGCCGAGAACATCAGTTTAATTGCCCTAATTTTTGATGTCACGTGGACTTCAATTGAACTTGCCCGCTCGGTTCTAGACAATTTCTTGCCCTGA

Coding sequence (CDS)

ATGGCGGATTGGATCGAGCTGTACAATATGCTTCCCCTGCAAATGCCAGCTTTTCATGTCAGTTACATCTCTTTTGGGGTCTACAAGGCTTCATCCATGCAGGCTTCGACATTGACACGACCAATTCAATCGATTTCGTCCCTCCAATGGCCGCTCGCTGCCGAGAACATCAGTTTAATTGCCCTAATTTTTGATGTCACGTGGACTTCAATTGAACTTGCCCGCTCGGTTCTAGACAATTTCTTGCCCTGA

Protein sequence

MADWIELYNMLPLQMPAFHVSYISFGVYKASSMQASTLTRPIQSISSLQWPLAAENISLIALIFDVTWTSIELARSVLDNFLP
Homology
[Close]
BLAST of IVF0006343 vs. ExPASy TrEMBL
Match: A0A6J1FJ11 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111445918 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.7e-10
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 33 MQASTLTRPIQSISSLQWPLAAENISLIALIFDVTWTSIELARSVLDNFLP 84
          M+AST TRPIQS+  LQWPL AE+ S +A++  VTWTSI LAR VLDNFLP
Sbjct: 1  MRASTSTRPIQSLRCLQWPLVAEDTSFVAMVLKVTWTSIGLARLVLDNFLP 51

[Close]
BLAST of IVF0006343 vs. ExPASy TrEMBL
Match: A0A6J1J3R3 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111481003 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 33 MQASTLTRPIQSISSLQWPLAAENISLIALIFDVTWTSIELARSVLDNFLP 84
          M+AST TRPIQS+  LQWPL AE+ S +A++  VTWTSI LAR VLDNFLP
Sbjct: 1  MRASTSTRPIQSLRCLQWPLVAEDTSFLAMVLKVTWTSIGLARLVLDNFLP 51

[Close]
BLAST of IVF0006343 vs. NCBI nr
Match: KAG7031798.1 (Auxin-responsive protein IAA29 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 8.59e-15
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 29 KASSMQASTLTRPIQSISSLQWPLAAENISLIALIFDVTWTSIELARSVLDNFLP 83
          K SSM+AST TRPIQS+  LQWPL AE+ S +A++  VTWTSI LAR VLDNFLP
Sbjct: 8  KGSSMRASTSTRPIQSLRCLQWPLVAEDTSFLAMVLKVTWTSIGLARLVLDNFLP 62

[Close]
BLAST of IVF0006343 vs. NCBI nr
Match: XP_022940237.1 (auxin-responsive protein IAA29-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 73.2 bits (178), Expect = 4.75e-13
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 33 MQASTLTRPIQSISSLQWPLAAENISLIALIFDVTWTSIELARSVLDNFLP 83
          M+AST TRPIQS+  LQWPL AE+ S +A++  VTWTSI LAR VLDNFLP
Sbjct: 1  MRASTSTRPIQSLRCLQWPLVAEDTSFVAMVLKVTWTSIGLARLVLDNFLP 51

[Close]
BLAST of IVF0006343 vs. NCBI nr
Match: XP_022982033.1 (auxin-responsive protein IAA29-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 72.8 bits (177), Expect = 6.59e-13
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 33 MQASTLTRPIQSISSLQWPLAAENISLIALIFDVTWTSIELARSVLDNFLP 83
          M+AST TRPIQS+  LQWPL AE+ S +A++  VTWTSI LAR VLDNFLP
Sbjct: 1  MRASTSTRPIQSLRCLQWPLVAEDTSFLAMVLKVTWTSIGLARLVLDNFLP 51

[Close]
BLAST of IVF0006343 vs. NCBI nr
Match: XP_023524314.1 (auxin-responsive protein IAA29-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 6.59e-13
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 33 MQASTLTRPIQSISSLQWPLAAENISLIALIFDVTWTSIELARSVLDNFLP 83
          M+AST TRPIQS+  LQWPL AE+ S +A++  VTWTSI LAR VLDNFLP
Sbjct: 1  MRASTSTRPIQSLRCLQWPLVAEDTSFLAMVLKVTWTSIGLARLVLDNFLP 51

The following BLAST results are available for this feature:
BLAST of IVF0006343 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0006343 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FJ117.7e-1068.63Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111445918 PE=3 SV=1[more]
A0A6J1J3R31.0e-0968.63Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111481003 PE=3 SV=1[more]
BLAST of IVF0006343 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031798.18.59e-1569.09Auxin-responsive protein IAA29 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022940237.14.75e-1368.63auxin-responsive protein IAA29-like isoform X2 [Cucurbita moschata][more]
XP_022982033.16.59e-1368.63auxin-responsive protein IAA29-like isoform X3 [Cucurbita maxima][more]
XP_023524314.16.59e-1368.63auxin-responsive protein IAA29-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of IVF0006343 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006343.1IVF0006343.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus