Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTGGAAATCTGTAAAGAAGATAAAAGACAAAGGACGTTATGAAGGATACGAGGCATGGCAGGCAAACAGAAGGAAGAATATAATAGTTATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACACGTCAATGGATGGACCATGCGACTTATTTGCAGAAAGAACTCGAAAAGACCAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAAAATCTTGAGAAGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGAAAGGAATATTTTCTCGAGCTTGTCAATGATTTGGATACATCAATTGAAAAACGAGAAACACAAATAATGGATTTGGAAGCACAAAACATTCTTTGCATCAAACTATTGATAGCCTACATTTGA
mRNA sequence
ATGCACTGGAAATCTGTAAAGAAGATAAAAGACAAAGGACGTTATGAAGGATACGAGGCATGGCAGGCAAACAGAAGGAAGAATATAATAGTTATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACACGTCAATGGATGGACCATGCGACTTATTTGCAGAAAGAACTCGAAAAGACCAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAAAATCTTGAGAAGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGAAAGGAATATTTTCTCGAGCTTGTCAATGATTTGGATACATCAATTGAAAAACGAGAAACACAAATAATGGATTTGGAAGCACAAAACATTCTTTGCATCAAACTATTGATAGCCTACATTTGA
Coding sequence (CDS)
ATGCACTGGAAATCTGTAAAGAAGATAAAAGACAAAGGACGTTATGAAGGATACGAGGCATGGCAGGCAAACAGAAGGAAGAATATAATAGTTATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACACGTCAATGGATGGACCATGCGACTTATTTGCAGAAAGAACTCGAAAAGACCAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAAAATCTTGAGAAGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGAAAGGAATATTTTCTCGAGCTTGTCAATGATTTGGATACATCAATTGAAAAACGAGAAACACAAATAATGGATTTGGAAGCACAAAACATTCTTTGCATCAAACTATTGATAGCCTACATTTGA
Protein sequence
MHWKSVKKIKDKGRYEGYEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMNKANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQNILCIKLLIAYI
Homology
BLAST of IVF0007548 vs. ExPASy TrEMBL
Match:
A0A5D3DLE9 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00180 PE=4 SV=1)
HSP 1 Score: 310.8 bits (795), Expect = 3.8e-81
Identity = 168/190 (88.42%), Postives = 177/190 (93.16%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYE----GYEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKS++KIKDKG YE GYEAWQANRRKNII ISR+VVERGKETSF+QPNQWIEKS EL
Sbjct: 77 WKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKETSFKQPNQWIEKSKEL 136
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQEN+KLRKET QWMDHATYLQ ELEKTKSFL+NQDKLEKNLE LDKEMRRMN
Sbjct: 137 EEKNRLLEQENKKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMN 196
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQNI 182
KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFL+LVNDL+TSI K ETQIMDLEAQ I
Sbjct: 197 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQII 256
Query: 183 LCIKLLIAYI 189
LC+KLLIAYI
Sbjct: 257 LCVKLLIAYI 266
BLAST of IVF0007548 vs. ExPASy TrEMBL
Match:
A0A5A7VFL0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=4 SV=1)
HSP 1 Score: 298.1 bits (762), Expect = 2.5e-77
Identity = 159/179 (88.83%), Postives = 168/179 (93.85%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYE----GYEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKS++KIKDKG YE GYEAWQANRRKNII ISR+VVERGK+TSFEQPNQWIEKSIEL
Sbjct: 283 WKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKKTSFEQPNQWIEKSIEL 342
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQENEKLRKET QWMDHATYLQ ELEKTKSFL+NQDKLEK+LE LDKEMRRMN
Sbjct: 343 EEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMN 402
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQN 178
KANRSLKNEKTTLQAT+GSQDEYIKDLE+GKEYFLE VNDL+TSI KRETQIMDLEAQN
Sbjct: 403 KANRSLKNEKTTLQATMGSQDEYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQN 461
BLAST of IVF0007548 vs. ExPASy TrEMBL
Match:
A0A5D3DWE5 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00370 PE=4 SV=1)
HSP 1 Score: 293.5 bits (750), Expect = 6.3e-76
Identity = 157/179 (87.71%), Postives = 166/179 (92.74%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYE----GYEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKSV+KIKDKG YE GYEAWQ NRRKNII ISR+VV RGKETSF+QPNQWIEKS+EL
Sbjct: 149 WKSVRKIKDKGHYEGVTSGYEAWQTNRRKNIIDISREVVGRGKETSFKQPNQWIEKSLEL 208
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQENEKLRK+T QWMDHATYLQKELEKTKSFL+NQDKLE NLE LDKEMRR+N
Sbjct: 209 EEKNRLLEQENEKLRKKTSQWMDHATYLQKELEKTKSFLKNQDKLEMNLETLDKEMRRIN 268
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQN 178
KANRSLKNEKTTLQA VGSQDEYIKDLESGKEYFLELVNDL+TSIEK+ETQIMDLEA N
Sbjct: 269 KANRSLKNEKTTLQAIVGSQDEYIKDLESGKEYFLELVNDLNTSIEKQETQIMDLEAHN 327
BLAST of IVF0007548 vs. ExPASy TrEMBL
Match:
A0A5A7SMK0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001920 PE=4 SV=1)
HSP 1 Score: 291.6 bits (745), Expect = 2.4e-75
Identity = 156/179 (87.15%), Postives = 165/179 (92.18%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYE----GYEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKSV+KIKDKG YE GYEAWQ NRRKNII ISR+VV RGKETSF+QPNQWIEKS+EL
Sbjct: 149 WKSVRKIKDKGHYEGVTSGYEAWQTNRRKNIIDISREVVGRGKETSFKQPNQWIEKSLEL 208
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQENEKLRK+T QWMDHATYLQ ELEKTKSFL+NQDKLE NLE LDKEMRR+N
Sbjct: 209 EEKNRLLEQENEKLRKKTSQWMDHATYLQNELEKTKSFLKNQDKLEMNLETLDKEMRRIN 268
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQN 178
KANRSLKNEKTTLQA VGSQDEYIKDLESGKEYFLELVNDL+TSIEK+ETQIMDLEA N
Sbjct: 269 KANRSLKNEKTTLQAIVGSQDEYIKDLESGKEYFLELVNDLNTSIEKQETQIMDLEAHN 327
BLAST of IVF0007548 vs. ExPASy TrEMBL
Match:
A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)
HSP 1 Score: 287.7 bits (735), Expect = 3.4e-74
Identity = 155/179 (86.59%), Postives = 162/179 (90.50%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYE----GYEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKS++KIKDKG YE GYEAWQANRRKNII ISR+VVERGKETSFEQPNQWI+KSIEL
Sbjct: 145 WKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKETSFEQPNQWIKKSIEL 204
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQENEKLRKET QWMDHA YLQ ELEK KS L+NQDKLEKNLE LDKEMRRMN
Sbjct: 205 EEKNRLLEQENEKLRKETSQWMDHAAYLQNELEKNKSSLKNQDKLEKNLETLDKEMRRMN 264
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQN 178
KANRSLKNEKTTL+ATVGS+DEYIKDLESGKEYFLE VNDL TSI RETQIMDLEA N
Sbjct: 265 KANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDLEAHN 323
BLAST of IVF0007548 vs. NCBI nr
Match:
KAA0055606.1 (girdin-like [Cucumis melo var. makuwa] >TYK24461.1 girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 305 bits (782), Expect = 2.40e-102
Identity = 168/190 (88.42%), Postives = 177/190 (93.16%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYEG----YEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKS++KIKDKG YEG YEAWQANRRKNII ISR+VVERGKETSF+QPNQWIEKS EL
Sbjct: 77 WKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKETSFKQPNQWIEKSKEL 136
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQEN+KLRKET QWMDHATYLQ ELEKTKSFL+NQDKLEKNLE LDKEMRRMN
Sbjct: 137 EEKNRLLEQENKKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMN 196
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQNI 182
KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFL+LVNDL+TSI K ETQIMDLEAQ I
Sbjct: 197 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQII 256
Query: 183 LCIKLLIAYI 188
LC+KLLIAYI
Sbjct: 257 LCVKLLIAYI 266
BLAST of IVF0007548 vs. NCBI nr
Match:
KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 293 bits (750), Expect = 2.85e-94
Identity = 159/179 (88.83%), Postives = 168/179 (93.85%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYEG----YEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKS++KIKDKG YEG YEAWQANRRKNII ISR+VVERGK+TSFEQPNQWIEKSIEL
Sbjct: 283 WKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKKTSFEQPNQWIEKSIEL 342
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQENEKLRKET QWMDHATYLQ ELEKTKSFL+NQDKLEK+LE LDKEMRRMN
Sbjct: 343 EEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMN 402
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQN 177
KANRSLKNEKTTLQAT+GSQDEYIKDLE+GKEYFLE VNDL+TSI KRETQIMDLEAQN
Sbjct: 403 KANRSLKNEKTTLQATMGSQDEYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQN 461
BLAST of IVF0007548 vs. NCBI nr
Match:
TYK27808.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 288 bits (738), Expect = 1.00e-93
Identity = 157/179 (87.71%), Postives = 166/179 (92.74%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYEG----YEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKSV+KIKDKG YEG YEAWQ NRRKNII ISR+VV RGKETSF+QPNQWIEKS+EL
Sbjct: 149 WKSVRKIKDKGHYEGVTSGYEAWQTNRRKNIIDISREVVGRGKETSFKQPNQWIEKSLEL 208
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQENEKLRK+T QWMDHATYLQKELEKTKSFL+NQDKLE NLE LDKEMRR+N
Sbjct: 209 EEKNRLLEQENEKLRKKTSQWMDHATYLQKELEKTKSFLKNQDKLEMNLETLDKEMRRIN 268
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQN 177
KANRSLKNEKTTLQA VGSQDEYIKDLESGKEYFLELVNDL+TSIEK+ETQIMDLEA N
Sbjct: 269 KANRSLKNEKTTLQAIVGSQDEYIKDLESGKEYFLELVNDLNTSIEKQETQIMDLEAHN 327
BLAST of IVF0007548 vs. NCBI nr
Match:
KAA0025903.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 286 bits (733), Expect = 5.72e-93
Identity = 156/179 (87.15%), Postives = 165/179 (92.18%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYEG----YEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKSV+KIKDKG YEG YEAWQ NRRKNII ISR+VV RGKETSF+QPNQWIEKS+EL
Sbjct: 149 WKSVRKIKDKGHYEGVTSGYEAWQTNRRKNIIDISREVVGRGKETSFKQPNQWIEKSLEL 208
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQENEKLRK+T QWMDHATYLQ ELEKTKSFL+NQDKLE NLE LDKEMRR+N
Sbjct: 209 EEKNRLLEQENEKLRKKTSQWMDHATYLQNELEKTKSFLKNQDKLEMNLETLDKEMRRIN 268
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQN 177
KANRSLKNEKTTLQA VGSQDEYIKDLESGKEYFLELVNDL+TSIEK+ETQIMDLEA N
Sbjct: 269 KANRSLKNEKTTLQAIVGSQDEYIKDLESGKEYFLELVNDLNTSIEKQETQIMDLEAHN 327
BLAST of IVF0007548 vs. NCBI nr
Match:
XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])
HSP 1 Score: 283 bits (723), Expect = 9.25e-92
Identity = 155/179 (86.59%), Postives = 162/179 (90.50%), Query Frame = 0
Query: 3 WKSVKKIKDKGRYEG----YEAWQANRRKNIIVISRKVVERGKETSFEQPNQWIEKSIEL 62
WKS++KIKDKG YEG YEAWQANRRKNII ISR+VVERGKETSFEQPNQWI+KSIEL
Sbjct: 71 WKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKETSFEQPNQWIKKSIEL 130
Query: 63 EEKNRLLEQENEKLRKETRQWMDHATYLQKELEKTKSFLRNQDKLEKNLEKLDKEMRRMN 122
EEKNRLLEQENEKLRKET QWMDHA YLQ ELEK KS L+NQDKLEKNLE LDKEMRRMN
Sbjct: 131 EEKNRLLEQENEKLRKETSQWMDHAAYLQNELEKNKSSLKNQDKLEKNLETLDKEMRRMN 190
Query: 123 KANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLDTSIEKRETQIMDLEAQN 177
KANRSLKNEKTTL+ATVGS+DEYIKDLESGKEYFLE VNDL TSI RETQIMDLEA N
Sbjct: 191 KANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDLEAHN 249
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DLE9 | 3.8e-81 | 88.42 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00180 PE... | [more] |
| A0A5A7VFL0 | 2.5e-77 | 88.83 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=... | [more] |
| A0A5D3DWE5 | 6.3e-76 | 87.71 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00370 PE... | [more] |
| A0A5A7SMK0 | 2.4e-75 | 87.15 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001920 PE... | [more] |
| A0A5D3DK34 | 3.4e-74 | 86.59 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
