IVF0000254.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0000254.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	COX assembly mitochondrial protein
Location	chr12: 16211164 .. 16212614 (-)
Sequence length	1451
RNA-Seq Expression	IVF0000254.1
Synteny	IVF0000254.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCACAAAAAAAAGAAAAAAAAGAAAAAAAAAAAGAAAACTTTCCTTTCCTCCCCCAAATGGTGCGGGACACCGTTGCGTCTACGGAAAGTAAGAGATGTTACCAATCGGTGAATCTCCGATGTGCGGTGACGATGGCTGCGAGCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCGCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGTGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCCTTGAAATCGGTGTAGAAAAAGGGGAAACCTGCAGGTTGGATATCGCATCGGAGAAGATGGATTAATGAGTATGTGAAGATAATGGACCACTCGTGTTTTTAAAAATTCCTTAGAACAAACAAATCTATTCTCTTCTCGTTGAAGGTCAGATCCCGAGAATTGGAAAAGAATGTGAATTTATATCCCTTCTCGAGGAAAAAAAAACATCAAAATTGTTGAATATACTGAGTGAAATTCCTTCCGAGTCGCACAATTTTGTTATTAGCAACTATATATTTTGGTTTTGTTATAGAACATCTCATTGATATCAATTGGAAGTCTCAATATCAAACTCTGAATTTTGTTCAAACAAAGTACTCCCATCTCCTTATTCATCAATCCCACCCTTGATTGCTTTTGCTTGCTTTTTAGAGTTGAAGCTGCCATTCTTGTTGGCTGTTGCCATTGCAAATGCTCTTGCCCTTTCTTTTCATGTTCTGCCAAAATTCGTATTCTAATGGAGCTCACTCACCAGGACCCATTTGTTCATAACCTCACAAAGCCTTCTTTGAAACTTGAGTTTGATTATAAATGGAGTTATAGTGAGTAGTGTTAACTGATTCCAAGCTCCTCGAGATACCTGCATCCAATCTAAGATTGGCCTCAACATCAAAAAAATTTGGTATTAAGCTCTCCTGAATATTGGAACTTGGGACTTCATTTAAGTCAGCCTCCAAGTTCATACCTAGGAAATATTTTGGTCGTTGTTTCAAGTTGATATGATTTTTTATGGAAATTTGGGAACTGGGACAGTACTGTTAAAGCTAATAGGAAAGTTCATATCTGGACTTGACTCTATCAACCATTACAAAGCAATCGTCCATCGTTGAAGAGGGTGGAAACTAGCAAATACATACTTCTTTTTAGAAAATATTGTACTGGGTAGCAAAACATTTTGGTGGTTTGCTTTCTCAAATATGACAGAGTTCTAGGTCTGTTTGAAAACAAAGATAGAATTTAAGTTTTTAGATGTGTTTGATCGGATATTTGAATTCAAATTTCAATATAAACAAATTCT

mRNA sequence

GCGCACAAAAAAAAGAAAAAAAAGAAAAAAAAAAAGAAAACTTTCCTTTCCTCCCCCAAATGGTGCGGGACACCGTTGCGTCTACGGAAAGTAAGAGATGTTACCAATCGGTGAATCTCCGATGTGCGGTGACGATGGCTGCGAGCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCGCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGTGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCCTTGAAATCGGTGTAGAAAAAGGGGAAACCTGCAGGTTGGATATCGCATCGGAGAAGATGGATTAATGAGTATGTGAAGATAATGGACCACTCGTGTTTTTAAAAATTCCTTAGAACAAACAAATCTATTCTCTTCTCGTTGAAGGTCAGATCCCGAGAATTGGAAAAGAATGTGAATTTATATCCCTTCTCGAGGAAAAAAAAACATCAAAATTGTTGAATATACTGAGTGAAATTCCTTCCGAGTCGCACAATTTTGTTATTAGCAACTATATATTTTGGTTTTGTTATAGAACATCTCATTGATATCAATTGGAAGTCTCAATATCAAACTCTGAATTTTGTTCAAACAAAGTACTCCCATCTCCTTATTCATCAATCCCACCCTTGATTGCTTTTGCTTGCTTTTTAGAGTTGAAGCTGCCATTCTTGTTGGCTGTTGCCATTGCAAATGCTCTTGCCCTTTCTTTTCATGTTCTGCCAAAATTCGTATTCTAATGGAGCTCACTCACCAGGACCCATTTGTTCATAACCTCACAAAGCCTTCTTTGAAACTTGAGTTTGATTATAAATGGAGTTATAGTGAGTAGTGTTAACTGATTCCAAGCTCCTCGAGATACCTGCATCCAATCTAAGATTGGCCTCAACATCAAAAAAATTTGGTATTAAGCTCTCCTGAATATTGGAACTTGGGACTTCATTTAAGTCAGCCTCCAAGTTCATACCTAGGAAATATTTTGGTCGTTGTTTCAAGTTGATATGATTTTTTATGGAAATTTGGGAACTGGGACAGTACTGTTAAAGCTAATAGGAAAGTTCATATCTGGACTTGACTCTATCAACCATTACAAAGCAATCGTCCATCGTTGAAGAGGGTGGAAACTAGCAAATACATACTTCTTTTTAGAAAATATTGTACTGGGTAGCAAAACATTTTGGTGGTTTGCTTTCTCAAATATGACAGAGTTCTAGGTCTGTTTGAAAACAAAGATAGAATTTAAGTTTTTAGATGTGTTTGATCGGATATTTGAATTCAAATTTCAATATAAACAAATTCT

Coding sequence (CDS)

ATGTTACCAATCGGTGAATCTCCGATGTGCGGTGACGATGGCTGCGAGCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCGCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGTGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGA

Protein sequence

MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF

Homology

[Close]

BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match: A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
          MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match: A0A1S3C8S8 (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
          MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match: A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
          MLP+GESP+ GD GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match: A0A6J1CN74 (uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012670 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1   MLPIGESPMCGD--DGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60
           MLP GE+P+ G    GCERLEQALR+CH+RVP+GPARRSACRHLNRSLAECLVATACP+E
Sbjct: 14  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 61  VEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 94
            EAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 74  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 108

[Close]

BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match: A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.0e-36
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
          M+P G++P+ GD GCERLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 94
          AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93

[Close]

BLAST of IVF0000254.1 vs. NCBI nr
Match: XP_008459043.1 (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 uncharacterized protein E6C27_scaffold110G00780 [Cucumis melo var. makuwa] >TYK12262.1 uncharacterized protein E5676_scaffold302G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (488), Expect = 1.05e-61
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
          MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of IVF0000254.1 vs. NCBI nr
Match: XP_004145445.1 (uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 180 bits (456), Expect = 7.98e-57
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
          MLP+GESP+ GD GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of IVF0000254.1 vs. NCBI nr
Match: XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])

HSP 1 Score: 176 bits (447), Expect = 2.20e-55
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
          MLP G + +CGD GCERLEQALRECHKR+PEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 6  MLPTGGASICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATACPSEAE 65

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 66 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 99

[Close]

BLAST of IVF0000254.1 vs. NCBI nr
Match: XP_022142592.1 (uncharacterized protein LOC111012670 [Momordica charantia])

HSP 1 Score: 160 bits (405), Expect = 7.65e-49
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1   MLPIGESPMCGDD--GCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60
           MLP GE+P+ G    GCERLEQALR+CH+RVP+GPARRSACRHLNRSLAECLVATACP+E
Sbjct: 14  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 61  VEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93
            EAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 74  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 108

[Close]

BLAST of IVF0000254.1 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159 bits (402), Expect = 1.38e-48
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
          M+P G++P+ GD GCERLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93
          AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93

[Close]

BLAST of IVF0000254.1 vs. TAIR 10
Match: AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 4   IGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVEAVR 63
           I E PM     C+RLE+AL +CH+R+PEGPARRS CRHLN++ AEC+VA ACP E EAVR
Sbjct: 26  IREIPM---KSCDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVR 85

Query: 64  TLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 94
           +LCSSGGT+LKR QCE A+ SLS CLS  Q
Sbjct: 86  SLCSSGGTSLKRKQCEYAQLSLSLCLSRHQ 112

The following BLAST results are available for this feature:

BLAST of IVF0000254.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000254.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLT3	5.8e-46	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C8S8	5.8e-46	100.00	uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=...	[more]
A0A0A0LYC1	3.0e-42	93.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1	[more]
A0A6J1CN74	2.4e-36	83.16	uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1K2P5	7.0e-36	81.72	uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507...	[more]

BLAST of IVF0000254.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459043.1	1.05e-61	100.00	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 unc...	[more]
XP_004145445.1	7.98e-57	93.62	uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
XP_038893663.1	2.20e-55	91.49	uncharacterized protein LOC120082530 [Benincasa hispida]	[more]
XP_022142592.1	7.65e-49	83.16	uncharacterized protein LOC111012670 [Momordica charantia]	[more]
XP_023542217.1	1.38e-48	81.72	uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0000254.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31175.1	3.1e-28	66.67	unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0000254	IVF0000254	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000254.1-exon	IVF0000254.1-exon-chr12:16211164..16212614	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000254.1-three_prime_utr	IVF0000254.1-three_prime_utr-chr12:16211164..16212232	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000254.1-cds	IVF0000254.1-cds-chr12:16212233..16212517	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000254.1-five_prime_utr	IVF0000254.1-five_prime_utr-chr12:16212518..16212614	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0000254.1	IVF0000254.1-protein	polypeptide