IVF0001476 (gene) Melon (IVF77) v1

Overview


Name	IVF0001476
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 20701751 .. 20701930 (-)
RNA-Seq Expression	IVF0001476
Synteny	IVF0001476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGAAATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA

mRNA sequence

ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGAAATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA

Coding sequence (CDS)

ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGAAATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA

Protein sequence

MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL

Homology

[Close]

BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5D3BQB5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00500 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.9e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 52
           MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
Sbjct: 121 MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 171

[Close]

BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7UMR6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00330 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-18
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 52
           MSPDDITGTRPGHSSKGRLSSRGSKRKR GHTTETVEIIRTTMEYANDQLK
Sbjct: 57  MSPDDITGTRPGHSSKGRLSSRGSKRKREGHTTETVEIIRTTMEYANDQLK 107

[Close]

BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7UK94 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00180 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 60
           MS ++I GT+P  SSKG+ +S  SKRKRGGHT ETV IIR  ME+ANDQLK I EWPN+
Sbjct: 281 MSSNNIMGTQPSRSSKGKNASSKSKRKRGGHTAETVNIIRNEMEFANDQLKAIEEWPNV 339

[Close]

BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7T0C2 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001730 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 60
          MSP++I GT+PG SS+G+ SS G KRKRGG   E  EIIR   EYANDQLK I EWPN+
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNV 59

[Close]

BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 60
           M PDDI GTRP  SS+ R  S GSKRK+GG   E+VEIIR+ MEY N QLK I EW N+
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNM 106

[Close]

BLAST of IVF0001476 vs. NCBI nr
Match: TYK01364.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 8.91e-26
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 51
           MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
Sbjct: 121 MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 171

[Close]

BLAST of IVF0001476 vs. NCBI nr
Match: KAA0055556.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 2.80e-25
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 51
           MSPDDITGTRPGHSSKGRLSSRGSKRKR GHTTETVEIIRTTMEYANDQLK
Sbjct: 57  MSPDDITGTRPGHSSKGRLSSRGSKRKREGHTTETVEIIRTTMEYANDQLK 107

[Close]

BLAST of IVF0001476 vs. NCBI nr
Match: KAA0036810.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.10e-17
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 59
          MSP++I GT+PG SS+G+ SS G KRKRGG   E  EIIR   EYANDQLK I EWPN+
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNV 59

[Close]

BLAST of IVF0001476 vs. NCBI nr
Match: KAA0055448.1 (uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa] >TYK08930.1 uncharacterized protein E5676_scaffold314G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 5.42e-16
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 59
           MS ++I GT+P  SSKG+ +S  SKRKRGGHT ETV IIR  ME+ANDQLK I EWPN+
Sbjct: 281 MSSNNIMGTQPSRSSKGKNASSKSKRKRGGHTAETVNIIRNEMEFANDQLKAIEEWPNV 339

[Close]

BLAST of IVF0001476 vs. NCBI nr
Match: KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 5.43e-16
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 59
           M PDDI GTRP  SS+ R  S GSKRK+GG   E+VEIIR+ MEY N QLK I EW N+
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNM 106

The following BLAST results are available for this feature:

BLAST of IVF0001476 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQB5	2.9e-19	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UMR6	2.4e-18	98.04	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UK94	3.4e-12	66.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T0C2	7.6e-12	64.41	RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7V3C0	4.9e-11	62.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0001476 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01364.1	8.91e-26	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055556.1	2.80e-25	98.04	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036810.1	1.10e-17	64.41	RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 fing...	[more]
KAA0055448.1	5.42e-16	66.10	uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0060365.1	5.43e-16	62.71	retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon p...	[more]

BLAST of IVF0001476 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001476.1	IVF0001476.1	mRNA