Tan0004889 (gene) Snake gourd v1

Overview


Name	Tan0004889
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG07: 73804923 .. 73805207 (+)
RNA-Seq Expression	Tan0004889
Synteny	Tan0004889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCCAATTTTTTTTCTTTTTAGCCATTGTTCTTCTTCTTGCCAACATTCATCACCTCCAAGGTTGCAGAACCATGAAACAGGATCGACAAAAGTGGTCGACGGTGCTTCAACAGTCTCTGCAGAGGGCCCCGGTTCCTCCCTCTGCCAGAAATGGTGGCACCAATATTCCGGTGCCGGTCGGGCAAAGGGCCTTTGTCGGAAAAACCACGGCGGCGCCGGCACACACCTACCCAAATCATGTACCGGCTTCTTTTGGTATGCCCTTGAAGACAAACTAA

mRNA sequence

ATGAAGATCCAATTTTTTTTCTTTTTAGCCATTGTTCTTCTTCTTGCCAACATTCATCACCTCCAAGGTTGCAGAACCATGAAACAGGATCGACAAAAGTGGTCGACGGTGCTTCAACAGTCTCTGCAGAGGGCCCCGGTTCCTCCCTCTGCCAGAAATGGTGGCACCAATATTCCGGTGCCGGTCGGGCAAAGGGCCTTTGTCGGAAAAACCACGGCGGCGCCGGCACACACCTACCCAAATCATGTACCGGCTTCTTTTGGTATGCCCTTGAAGACAAACTAA

Coding sequence (CDS)

ATGAAGATCCAATTTTTTTTCTTTTTAGCCATTGTTCTTCTTCTTGCCAACATTCATCACCTCCAAGGTTGCAGAACCATGAAACAGGATCGACAAAAGTGGTCGACGGTGCTTCAACAGTCTCTGCAGAGGGCCCCGGTTCCTCCCTCTGCCAGAAATGGTGGCACCAATATTCCGGTGCCGGTCGGGCAAAGGGCCTTTGTCGGAAAAACCACGGCGGCGCCGGCACACACCTACCCAAATCATGTACCGGCTTCTTTTGGTATGCCCTTGAAGACAAACTAA

Protein sequence

MKIQFFFFLAIVLLLANIHHLQGCRTMKQDRQKWSTVLQQSLQRAPVPPSARNGGTNIPVPVGQRAFVGKTTAAPAHTYPNHVPASFGMPLKTN

Homology

[Close]

BLAST of Tan0004889 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MKIQFFFFLAIVLLLANIHHLQGCRTMKQDRQKWSTVLQQSLQRAPVPPSARNGGTNIPV 60
          MKIQF F LAIV+LLAN H LQ CRTMK DRQKWS +LQQSLQRAPVPPSA+NGGT IPV
Sbjct: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPV 60

Query: 61 PVGQRAFVGKTTAAPAHTYPNHVPASFGMPLKTN 95
          P+GQRAFVGK+T +PAH+Y + VP  FG+ +KTN
Sbjct: 61 PLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94

[Close]

BLAST of Tan0004889 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 66/95 (69.47%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MKIQFFFFLAIVLLLANIHHLQGCRTMKQDRQKWS-TVLQQSLQRAPVPPSARNGGTNIP 60
          MKIQF F LAI+++LAN H LQ CRTMK+DRQKWS  +LQQSLQRAPVPPSA+NGGT IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60

Query: 61 VPVGQRAFVGKTTAAPAHTYPNHVPASFGMPLKTN 95
          VP+GQR+FVGK+T +PAH+Y + VP  FG+ + TN
Sbjct: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

[Close]

BLAST of Tan0004889 vs. NCBI nr
Match: KAG6571501.1 (hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 1  MKIQFFFFLAIVLLLANIHHLQGCRTMKQDRQKWS-TVLQQSLQRAPVPPSARNGGTNIP 60
          MKIQF F LAI+++LAN H LQ CRTMK+DRQKWS  +LQQSL+R PVPPSA+NGGT IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLKRVPVPPSAQNGGTTIP 60

Query: 61 VPVGQRAFVGKTTAAPAHTYPNHVPASFGMPLKTN 95
            +GQRAFVGK+T +PAH+Y + VP  FG+ + TN
Sbjct: 61 TQLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

[Close]

BLAST of Tan0004889 vs. NCBI nr
Match: KAA0025373.1 (hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ95702.1 hypothetical protein E5676_scaffold63958G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MKIQFFFFLAIVLLLANIHHLQGCRTMKQDRQKWSTVLQQSLQRAPVPPSARNGGTNIPV 60
          MKIQF FF AI++LLAN HHLQ CRTMK D++KWS ++QQSLQRAPVPPS R+G TNIPV
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPV 60

Query: 61 PVGQRAFVGKTTAAPAHTYPNHVPASFGMPLKTN 95
          P+GQ+AF GK+T  PA   P+++    G+ LKTN
Sbjct: 61 PLGQQAFAGKSTVPPAFPDPDNLEVPSGVALKTN 94

[Close]

BLAST of Tan0004889 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.1 bits (318), Expect = 8.0e-26
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MKIQFFFFLAIVLLLANIHHLQGCRTMKQDRQKWS-TVLQQSLQRAPVPPSARNGGTNIP 60
          MKIQF F LAI+++LAN H LQ CRTMK+D QKWS  +LQQSLQRAPVPP+A+NGGT IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIP 60

Query: 61 VPVGQRAFVGKTTAAPAHTYPNHVPASFGM-PLKTN 95
           P+GQRAFVGK+T +PAH+Y + VP   G+  +KTN
Sbjct: 61 TPLGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKTN 96

[Close]

BLAST of Tan0004889 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.0e-26
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MKIQFFFFLAIVLLLANIHHLQGCRTMKQDRQKWSTVLQQSLQRAPVPPSARNGGTNIPV 60
          MKIQF FF AI++LLAN HHLQ CRTMK D++KWS ++QQSLQRAPVPPS R+G TNIPV
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPV 60

Query: 61 PVGQRAFVGKTTAAPAHTYPNHVPASFGMPLKTN 95
          P+GQ+AF GK+T  PA   P+++    G+ LKTN
Sbjct: 61 PLGQQAFAGKSTVPPAFPDPDNLEVPSGVALKTN 94

[Close]

BLAST of Tan0004889 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MKIQFFFFLAIVLLLANIHHLQGCRTMKQDRQKWS---TVLQQSLQRAPVPPSARNGGTN 60
          MKIQF F LAI++LLAN HHLQ CRT+K D+Q WS    +LQQSLQR PVPPSA+NG TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQRAFVGKTTAAPAHTY 80
          IPVPVGQRAF GKT+AA A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

The following BLAST results are available for this feature:

BLAST of Tan0004889 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004889 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571505.1	2.2e-31	74.47	hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571503.1	1.3e-28	69.47	hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571501.1	1.6e-26	66.32	hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025373.1	6.1e-26	64.89	hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ957...	[more]
KAG6571504.1	8.0e-26	66.67	hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0004889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B777	3.0e-26	64.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LCY5	1.2e-22	71.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1	[more]

BLAST of Tan0004889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004889.1	Tan0004889.1	mRNA