IVF0024624 (gene) Melon (IVF77) v1

Overview
NameIVF0024624
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 26786015 .. 26786326 (-)
RNA-Seq ExpressionIVF0024624
SyntenyIVF0024624
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTGGAAGTGGCTCTTCAACTGATGGGGTTTAACACAACAAATGACATATGGGAAGCCATACAATATTTATTTGGAGTACAATCAAGGACAGAGGAAGATTTTTTCAGGCACACGTTTCAGACTACCCAAAAAGGTAATTCTAAGATGGAAGATTATTTGTGCATTATGAAAACTAACACTGCCAACCTCGACCAGGCCGGGAGTCTTGTTCCTCTCTGTTCCTTAATTTCTCAGGTCTTATTGAGGTTGGATGAAGTCTACAATCCTGTAACCGCTGTTATTCAGGGAAAACCCAACATCTCTTGA

mRNA sequence

ATGACAGTGGAAGTGGCTCTTCAACTGATGGGGTTTAACACAACAAATGACATATGGGAAGCCATACAATATTTATTTGGAGTACAATCAAGGACAGAGGAAGATTTTTTCAGGCACACGTTTCAGACTACCCAAAAAGGTAATTCTAAGATGGAAGATTATTTGTGCATTATGAAAACTAACACTGCCAACCTCGACCAGGCCGGGAGTCTTGTTCCTCTCTGTTCCTTAATTTCTCAGGTCTTATTGAGGTTGGATGAAGTCTACAATCCTGTAACCGCTGTTATTCAGGGAAAACCCAACATCTCTTGA

Coding sequence (CDS)

ATGACAGTGGAAGTGGCTCTTCAACTGATGGGGTTTAACACAACAAATGACATATGGGAAGCCATACAATATTTATTTGGAGTACAATCAAGGACAGAGGAAGATTTTTTCAGGCACACGTTTCAGACTACCCAAAAAGGTAATTCTAAGATGGAAGATTATTTGTGCATTATGAAAACTAACACTGCCAACCTCGACCAGGCCGGGAGTCTTGTTCCTCTCTGTTCCTTAATTTCTCAGGTCTTATTGAGGTTGGATGAAGTCTACAATCCTGTAACCGCTGTTATTCAGGGAAAACCCAACATCTCTTGA

Protein sequence

MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKTNTANLDQAGSLVPLCSLISQVLLRLDEVYNPVTAVIQGKPNIS
Homology
[Close]
BLAST of IVF0024624 vs. ExPASy TrEMBL
Match: A0A0A0K3F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0 

Query: 1  MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
          MT EVALQLMGFNT  D+WEAIQ LFGVQ R EEDF RHTFQTTQKGNSKMEDYL  MKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 NTANLDQAGSLVPLCSLISQVLLRLDEVYNPVTAVI 97
          N  NLDQAGS VPL SLISQV+L LDE+YNPVTAVI
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]
BLAST of IVF0024624 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.0e-32
Identity = 77/103 (74.76%), Postives = 84/103 (81.55%), Query Frame = 0 

Query: 1   MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
           M  +VALQLMGFNT  D+WEAIQ LFG++SR EE F RHTFQTT++GN KMEDYL IMK 
Sbjct: 87  MVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLRIMKI 146

Query: 61  NTANLDQAGSLVPLCSLISQVLLRLDEVYNPVTAVIQGKPNIS 104
           N  NL QAGS VP   LISQVLL LDEVYNPVTAVIQGKP+IS
Sbjct: 147 NADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVIQGKPDIS 189

[Close]
BLAST of IVF0024624 vs. ExPASy TrEMBL
Match: A0A5A7UY76 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00940 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 73/91 (80.22%), Postives = 76/91 (83.52%), Query Frame = 0 

Query: 1   MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
           MT EVA QLMGFNT  D+ EAIQ LFGVQSR EEDF RHTFQTT+KGNSKMEDYL IMKT
Sbjct: 76  MTAEVAFQLMGFNTAKDLEEAIQDLFGVQSRGEEDFLRHTFQTTRKGNSKMEDYLRIMKT 135

Query: 61  NTANLDQAGSLVPLCSLISQVLLRLDEVYNP 92
           N  NL QAGS +PL SLISQVLL LDEVYNP
Sbjct: 136 NAENLGQAGSPIPLRSLISQVLLGLDEVYNP 166

[Close]
BLAST of IVF0024624 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.7e-28
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 1   MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
           MT +VA+QLMGF    D+W+A Q  FGVQSR EEDF R   QTT+KGN+KME+YL +MKT
Sbjct: 123 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKT 182

Query: 61  NTANLDQAGSLVPLCSLISQVLLRLDEVYNPVTAVIQGKPNIS 104
           N  NL Q GS VP  +LISQVLL LDEVYN V  VIQGKP+IS
Sbjct: 183 NVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDIS 225

[Close]
BLAST of IVF0024624 vs. ExPASy TrEMBL
Match: A0A0A0LXB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.7e-28
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 0 

Query: 1   MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
           +T EV +QL+GF    D+WEA    FGV+SR EEDF R TFQTT+KGNS MEDYL IMKT
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  NTANLDQAGSLVPLCSLISQVLLRLDEVYNPVTAVIQGKPNIS 104
           N  NL QA S +P  +LISQVLL LDEVYNPV  VIQGKP IS
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEIS 128

[Close]
BLAST of IVF0024624 vs. NCBI nr
Match: KGN44003.1 (hypothetical protein Csa_016232 [Cucumis sativus])

HSP 1 Score: 152 bits (383), Expect = 1.67e-45
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0 

Query: 1  MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
          MT EVALQLMGFNT  D+WEAIQ LFGVQ R EEDF RHTFQTTQKGNSKMEDYL  MKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 NTANLDQAGSLVPLCSLISQVLLRLDEVYNPVTAVI 96
          N  NLDQAGS VPL SLISQV+L LDE+YNPVTAVI
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]
BLAST of IVF0024624 vs. NCBI nr
Match: KAA0057475.1 (uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK30171.1 uncharacterized protein E5676_scaffold216G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 2.04e-40
Identity = 77/103 (74.76%), Postives = 84/103 (81.55%), Query Frame = 0 

Query: 1   MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
           M  +VALQLMGFNT  D+WEAIQ LFG++SR EE F RHTFQTT++GN KMEDYL IMK 
Sbjct: 87  MVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLRIMKI 146

Query: 61  NTANLDQAGSLVPLCSLISQVLLRLDEVYNPVTAVIQGKPNIS 103
           N  NL QAGS VP   LISQVLL LDEVYNPVTAVIQGKP+IS
Sbjct: 147 NADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVIQGKPDIS 189

[Close]
BLAST of IVF0024624 vs. NCBI nr
Match: XP_031739915.1 (uncharacterized protein LOC116403326 isoform X2 [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 6.09e-40
Identity = 74/103 (71.84%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
           MT+EVA +LMGF      WEA  +LFGVQSR EEDF R TFQTT+KG+ KMEDYLC+MKT
Sbjct: 1   MTLEVATKLMGFTNAKKFWEAT-HLFGVQSRAEEDFLRQTFQTTRKGSFKMEDYLCVMKT 60

Query: 61  NTANLDQAGSLVPLCSLISQVLLRLDEVYNPVTAVIQGKPNIS 103
           N  NL QAGSLVP C+LISQVLL LDEVYN V  VIQGK NIS
Sbjct: 61  NVDNLSQAGSLVPPCALISQVLLGLDEVYNLVIVVIQGKLNIS 102

[Close]
BLAST of IVF0024624 vs. NCBI nr
Match: XP_031739914.1 (uncharacterized protein LOC116403326 isoform X1 [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 7.23e-40
Identity = 74/103 (71.84%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
           MT+EVA +LMGF      WEA  +LFGVQSR EEDF R TFQTT+KG+ KMEDYLC+MKT
Sbjct: 1   MTLEVATKLMGFTNAKKFWEAT-HLFGVQSRAEEDFLRQTFQTTRKGSFKMEDYLCVMKT 60

Query: 61  NTANLDQAGSLVPLCSLISQVLLRLDEVYNPVTAVIQGKPNIS 103
           N  NL QAGSLVP C+LISQVLL LDEVYN V  VIQGK NIS
Sbjct: 61  NVDNLSQAGSLVPPCALISQVLLGLDEVYNLVIVVIQGKLNIS 102

[Close]
BLAST of IVF0024624 vs. NCBI nr
Match: KAA0060208.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ95582.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 2.37e-37
Identity = 73/91 (80.22%), Postives = 76/91 (83.52%), Query Frame = 0 

Query: 1   MTVEVALQLMGFNTTNDIWEAIQYLFGVQSRTEEDFFRHTFQTTQKGNSKMEDYLCIMKT 60
           MT EVA QLMGFNT  D+ EAIQ LFGVQSR EEDF RHTFQTT+KGNSKMEDYL IMKT
Sbjct: 76  MTAEVAFQLMGFNTAKDLEEAIQDLFGVQSRGEEDFLRHTFQTTRKGNSKMEDYLRIMKT 135

Query: 61  NTANLDQAGSLVPLCSLISQVLLRLDEVYNP 91
           N  NL QAGS +PL SLISQVLL LDEVYNP
Sbjct: 136 NAENLGQAGSPIPLRSLISQVLLGLDEVYNP 166

The following BLAST results are available for this feature:
BLAST of IVF0024624 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024624 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3F92.1e-3382.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1[more]
A0A5D3E3L74.0e-3274.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UY761.1e-2980.22Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7SIT77.7e-2866.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LXB77.7e-2866.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1[more]
BLAST of IVF0024624 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44003.11.67e-4582.29hypothetical protein Csa_016232 [Cucumis sativus][more]
KAA0057475.12.04e-4074.76uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK... [more]
XP_031739915.16.09e-4071.84uncharacterized protein LOC116403326 isoform X2 [Cucumis sativus][more]
XP_031739914.17.23e-4071.84uncharacterized protein LOC116403326 isoform X1 [Cucumis sativus][more]
KAA0060208.12.37e-3780.22Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ95582.1 Integrase, cata... [more]
BLAST of IVF0024624 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024624.2IVF0024624.2mRNA