IVF0009110 (gene) Melon (IVF77) v1

Overview
NameIVF0009110
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionHVA22-like protein
Locationchr11: 2828375 .. 2829014 (-)
RNA-Seq ExpressionIVF0009110
SyntenyIVF0009110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCACTACATTGATCGATCACTCCCAAAGAAAAATAAAGGGAAAATGACATTAATATTTTGTTTCTTCAAAAAAAAAGGAAAAAAGAAAAAAGGAAAATACATGAAAGTTTCCGTTTTTTCTATCCGCCAGTCAACTACTAGAGAATTCAGCTTCATCGGAATCTCAAACACGACGAACTTCATCCACGACGGCGGCGAGCCACTCGATGCAACCGAAACCGTGCTTCTTGAGGTTGCGGAGAAAGGTAGGGTGGGCGGTGGTGGGTGGGGTGAGCATGGGCTGAAGGTAGGCGAGGGCGGCGTGTTTGACGAGAGGGTTTTTGATGGGGAGTTCGTCGAAGGCGGGGGAGGTGGCGGAGGGGGGCGGAGAAGGGGAGTCGGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGTCCGAGAATTGTAGTTCGGGTGAGCTCAGAGGGTGATTTGGAGAGAGGAAGAAAGTTGGAGAAGGAGAAGGAGAAGGAGAATCATCCATGGTGGAGATGGGGAGGAGAGAGAGAGAGATTGAAAATGGGATTTTGATGGAATTATTATGAAAGATTTTGAGAGAAAGAGAGAGAGAGAGAGAGAGACTGTATGTTTGTGTGTGAT

mRNA sequence

ATCACTACATTGATCGATCACTCCCAAAGAAAAATAAAGGGAAAATGACATTAATATTTTGTTTCTTCAAAAAAAAAGGAAAAAAGAAAAAAGGAAAATACATGAAAGTTTCCGTTTTTTCTATCCGCCAGTCAACTACTAGAGAATTCAGCTTCATCGGAATCTCAAACACGACGAACTTCATCCACGACGGCGGCGAGCCACTCGATGCAACCGAAACCGTGCTTCTTGAGGTTGCGGAGAAAGGTAGGGTGGGCGGTGGTGGGTGGGGTGAGCATGGGCTGAAGGTAGGCGAGGGCGGCGTGTTTGACGAGAGGGTTTTTGATGGGGAGTTCGTCGAAGGCGGGGGAGGTGGCGGAGGGGGGCGGAGAAGGGGAGTCGGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGTCCGAGAATTGTAGTTCGGGTGAGCTCAGAGGGTGATTTGGAGAGAGGAAGAAAGTTGGAGAAGGAGAAGGAGAAGGAGAATCATCCATGGTGGAGATGGGGAGGAGAGAGAGAGAGATTGAAAATGGGATTTTGATGGAATTATTATGAAAGATTTTGAGAGAAAGAGAGAGAGAGAGAGAGAGACTGTATGTTTGTGTGTGAT

Coding sequence (CDS)

ATGACATTAATATTTTGTTTCTTCAAAAAAAAAGGAAAAAAGAAAAAAGGAAAATACATGAAAGTTTCCGTTTTTTCTATCCGCCAGTCAACTACTAGAGAATTCAGCTTCATCGGAATCTCAAACACGACGAACTTCATCCACGACGGCGGCGAGCCACTCGATGCAACCGAAACCGTGCTTCTTGAGGTTGCGGAGAAAGGTAGGGTGGGCGGTGGTGGGTGGGGTGAGCATGGGCTGAAGGTAGGCGAGGGCGGCGTGTTTGACGAGAGGGTTTTTGATGGGGAGTTCGTCGAAGGCGGGGGAGGTGGCGGAGGGGGGCGGAGAAGGGGAGTCGGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGTCCGAGAATTGTAG

Protein sequence

MTLIFCFFKKKGKKKKGKYMKVSVFSIRQSTTREFSFIGISNTTNFIHDGGEPLDATETVLLEVAEKGRVGGGGWGEHGLKVGEGGVFDERVFDGEFVEGGGGGGGGRRRGVGEEVFEAGVGLKRGHFDVVREL
Homology
[Close]
BLAST of IVF0009110 vs. ExPASy TrEMBL
Match: A0A540LKX7 (HVA22-like protein OS=Malus baccata OX=106549 GN=C1H46_027268 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 51  GEPLDATETVLLEVAEKGRVGGGGWGEHGLKVGEGGVFDERVFDGEFVEG--GGGGGGGR 110
           GE  +A   +L E A++      G G HGL+VG GG+  E V DG+FV G  GGGGGGG 
Sbjct: 252 GEEGEAGGELLAEAAKEVWARWAGGGGHGLEVGPGGLLHEAVADGDFVAGVVGGGGGGGV 311

Query: 111 RRGVGEEVFEAGVG 123
             G GE+VFE  VG
Sbjct: 312 NGGGGEQVFERSVG 325

[Close]
BLAST of IVF0009110 vs. NCBI nr
Match: KGN62004.2 (hypothetical protein Csa_005914 [Cucumis sativus])

HSP 1 Score: 148 bits (374), Expect = 1.05e-43
Identity = 76/85 (89.41%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 49  DGGEPLDATETVLLEVAEKGRVGGGGWGEHGLKVGEGGVFDERVFDGEFVEGGGGGGGGR 108
           DGGEPLDAT+TVLLE  EKGRVGGGGWGEHGLKVGEGGVFD+RV DGE VEG GGGG GR
Sbjct: 3   DGGEPLDATKTVLLEDTEKGRVGGGGWGEHGLKVGEGGVFDKRVLDGELVEGWGGGGWGR 62

Query: 109 RRGVGEEVFEAGVGLKRGHFDVVRE 133
           RRGVGEEVFEAGVGLKRGHFDVV E
Sbjct: 63  RRGVGEEVFEAGVGLKRGHFDVVGE 87

[Close]
BLAST of IVF0009110 vs. NCBI nr
Match: TQD87128.1 (hypothetical protein C1H46_027268 [Malus baccata])

HSP 1 Score: 55.8 bits (133), Expect = 5.69e-06
Identity = 37/75 (49.33%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 51  GEPLDATETVLLEVAEKGRVGGGGWGEHGLKVGEGGVFDERVFDGEFVEG--GGGGGGGR 110
           GE  +A   +L E A++      G G HGL+VG GG+  E V DG+FV G  GGGGGGG 
Sbjct: 252 GEEGEAGGELLAEAAKEVWARWAGGGGHGLEVGPGGLLHEAVADGDFVAGVVGGGGGGGV 311

Query: 111 RRGVGEEVFEAGVGL 123
             G GE+VFE  VG 
Sbjct: 312 NGGGGEQVFERSVGF 326

[Close]
BLAST of IVF0009110 vs. NCBI nr
Match: PSS23569.1 (Protein Shroom3 like [Actinidia chinensis var. chinensis])

HSP 1 Score: 48.5 bits (114), Expect = 5.41e-04
Identity = 37/82 (45.12%), Postives = 42/82 (51.22%), Query Frame = 0 

Query: 41  SNTTNFIHDGGEPLDATETVLLEVAEKGRVGGGGWGEHGLKVGEGGVFDERVFDGEFVEG 100
           SN    I DG     A E+    V E   VGG   G HGL+VG GG+ DE V DG+    
Sbjct: 38  SNRAEEIGDGALGEVAGESGPEAVEEVVAVGGVRRGGHGLEVGPGGLLDEVVADGDLATA 97

Query: 101 GGGGGGGRRRGVGEEVFEAGVG 122
             GGGGG   G  +EV E GVG
Sbjct: 98  ASGGGGGLDGGGRKEVLEGGVG 119

The following BLAST results are available for this feature:
BLAST of IVF0009110 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0009110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A540LKX72.0e-0450.00HVA22-like protein OS=Malus baccata OX=106549 GN=C1H46_027268 PE=3 SV=1[more]
BLAST of IVF0009110 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62004.21.05e-4389.41hypothetical protein Csa_005914 [Cucumis sativus][more]
TQD87128.15.69e-0649.33hypothetical protein C1H46_027268 [Malus baccata][more]
PSS23569.15.41e-0445.12Protein Shroom3 like [Actinidia chinensis var. chinensis][more]
BLAST of IVF0009110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009110.1IVF0009110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
biological_process GO:0009555 pollen development
cellular_component GO:0000421 autophagosome membrane