Pay0014845 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014845
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RING finger protein 165-like protein
Location	chr04: 23764254 .. 23764848 (-)
RNA-Seq Expression	Pay0014845
Synteny	Pay0014845

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAACCCCATACGCTTCACTCGCCGCCGCCACATCGCCAGGCACGATCGATCGCTCCAAAACCGATCGAGGCTTCGGGGCCATCCCTTCCCCCCACTACCACCCAACGAACTTCTTCCGTACGATGTCATCCATCCATTTAGGCGCCGCGTTCTGAGGGACGAGAGAGTGATTCCAGAAGAAGATCCAGCGAGCGAGGAAGTTGATGGGTATGAGGAAGAAGAGTTGGAGGGAGATTGTTGTATTTGTTGGGAAGAACTGAATGAAGAACCGAATGAAAAAGGGGAGAAGGAGGTGTGTAGAGTCAAGTGCGGCCATGTGTATCATAAGTCTTGTATACTCGCTTGGGTTCGAAGAAATCTTTCTTGTCCTTTGTGTAGAAGAAAAATAGAATTATGCAATGTAGATTAGTCTATAGATTTGTCAATTACTTTTAAGTTACTATTGATTCAAATTAAAACCTCAATGTGCTCTTTAGCTTTTCAAACTTTAATTTATTTATAACTATTTTTTCATTAAGATTAGGAAAAAAAAAAACATTATCACAAAAGAAAGACAAAAGGATAGAAAGTTAAATAATAAACAAATTTAA

mRNA sequence

ATGTCTAACCCCATACGCTTCACTCGCCGCCGCCACATCGCCAGGCACGATCGATCGCTCCAAAACCGATCGAGGCTTCGGGGCCATCCCTTCCCCCCACTACCACCCAACGAACTTCTTCCGTACGATGTCATCCATCCATTTAGGCGCCGCGTTCTGAGGGACGAGAGAGTGATTCCAGAAGAAGATCCAGCGAGCGAGGAAGTTGATGGGTATGAGGAAGAAGAGTTGGAGGGAGATTGTTGTATTTGTTGGGAAGAACTGAATGAAGAACCGAATGAAAAAGGGGAGAAGGAGGTGAAAAAAAAAAACATTATCACAAAAGAAAGACAAAAGGATAGAAAGTTAAATAATAAACAAATTTAA

Coding sequence (CDS)

ATGTCTAACCCCATACGCTTCACTCGCCGCCGCCACATCGCCAGGCACGATCGATCGCTCCAAAACCGATCGAGGCTTCGGGGCCATCCCTTCCCCCCACTACCACCCAACGAACTTCTTCCGTACGATGTCATCCATCCATTTAGGCGCCGCGTTCTGAGGGACGAGAGAGTGATTCCAGAAGAAGATCCAGCGAGCGAGGAAGTTGATGGGTATGAGGAAGAAGAGTTGGAGGGAGATTGTTGTATTTGTTGGGAAGAACTGAATGAAGAACCGAATGAAAAAGGGGAGAAGGAGGTGAAAAAAAAAAACATTATCACAAAAGAAAGACAAAAGGATAGAAAGTTAAATAATAAACAAATTTAA

Protein sequence

MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIPEEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGEKEVKKKNIITKERQKDRKLNNKQI

Homology

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BLAST of Pay0014845 vs. ExPASy TrEMBL
Match: A0A5A7UAN0 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00100 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.4e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60
           MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP
Sbjct: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60

Query: 61  EEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGEKEV 101
           EEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKG+KEV
Sbjct: 61  EEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEV 100

[Close]

BLAST of Pay0014845 vs. ExPASy TrEMBL
Match: A0A0A0LER3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680620 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.3e-13
Identity = 59/119 (49.58%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60
           MS+ IRFT RRH  RHD+SLQNR+  R     PLP +E LPY+++H  RRRV+ +E VI 
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSR----LPLPSDE-LPYNILHLIRRRVMGEETVIL 60

Query: 61  EEDPA--------------SEEVDGYEEEELEGDCCICWEELNEEPNEKGEKEVKKKNI 106
           EEDPA              SE+ DG  E E  GDCCIC EELN      G ++ KK+NI
Sbjct: 61  EEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELN------GGEKKKKENI 108

[Close]

BLAST of Pay0014845 vs. NCBI nr
Match: KAA0052772.1 (RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04184.1 RING finger protein 165-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 3.0e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60
           MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP
Sbjct: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60

Query: 61  EEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGEKEV 101
           EEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKG+KEV
Sbjct: 61  EEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEV 100

[Close]

BLAST of Pay0014845 vs. NCBI nr
Match: XP_031738983.1 (E3 ubiquitin-protein ligase RNF181 homolog [Cucumis sativus] >KAE8650921.1 hypothetical protein Csa_002242 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 8.5e-12
Identity = 55/109 (50.46%), Postives = 66/109 (60.55%), Query Frame = 0


Query: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60
           MS+ IRFT RRH  RHD+SLQNR+  R     PLP +E LPY+++H  RRRV+ +E VI 
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSR----LPLPSDE-LPYNILHLIRRRVMGEETVIL 60

Query: 61  EEDPA--------------SEEVDGYEEEELEGDCCICWEELNEEPNEK 96
           EEDPA              SE+ DG  E E  GDCCIC EELN    +K
Sbjct: 61  EEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK 104

The following BLAST results are available for this feature:

BLAST of Pay0014845 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0014845 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAN0	1.4e-49	99.00	RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0LER3	6.3e-13	49.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680620 PE=4 SV=1	[more]

BLAST of Pay0014845 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052772.1	3.0e-49	99.00	RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04184.1 RING...	[more]
XP_031738983.1	8.5e-12	50.46	E3 ubiquitin-protein ligase RNF181 homolog [Cucumis sativus] >KAE8650921.1 hypot...	[more]

BLAST of Pay0014845 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014845.1	Pay0014845.1	mRNA