Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTR exon CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGATTCATCAAAATTGGTATCAAAGCTTCTAGGAAGGGACTC ATGGTGGGAAAAAACCTAGCCAATGCCACCAAAGGGAAGGGTGTCGATAAGCAACCCTTGGAGTCGGAAATTCTTTCACCAAGGACTTCAACTACACACATGATGGTCGTTGAAGAGACTGTGGGAGACATTAACGGTCGTTTAGCTGATCTGCAACTCACGGTGGAACGCATTGATGAAGAAGATGGTCTCCAATGA TAACCCATGGACCGATGGTGGATTCAACAAAGTAGACATGGCCGAATTTTTTTCCTCATCATGTTGAAGGTCGATTTCGAGGGAATCACCAACAAGAATTCAAAATGAAGGTGGATTTACCTACTTTCAATGGAAAACTAGATATGGAGAAATTTCTTGATTGGATCAAGAATGTTGAAAATTTGTTTAGC mRNA sequence
CCAAGATTCATCAAAATTGGTATCAAAGCTTCTAGGAAGGGACTCATGGTGGGAAAAAACCTAGCCAATGCCACCAAAGGGAAGGGTGTCGATAAGCAACCCTTGGAGTCGGAAATTCTTTCACCAAGGACTTCAACTACACACATGATGGTCGTTGAAGAGACTGTGGGAGACATTAACGGTCGTTTAGCTGATCTGCAACTCACGGTGGAACGCATTGATGAAGAAGATGGTCTCCAATGATAACCCATGGACCGATGGTGGATTCAACAAAGTAGACATGGCCGAATTTTTTTCCTCATCATGTTGAAGGTCGATTTCGAGGGAATCACCAACAAGAATTCAAAATGAAGGTGGATTTACCTACTTTCAATGGAAAACTAGATATGGAGAAATTTCTTGATTGGATCAAGAATGTTGAAAATTTGTTTAGC Coding sequence (CDS)
ATGGTGGGAAAAAACCTAGCCAATGCCACCAAAGGGAAGGGTGTCGATAAGCAACCCTTGGAGTCGGAAATTCTTTCACCAAGGACTTCAACTACACACATGATGGTCGTTGAAGAGACTGTGGGAGACATTAACGGTCGTTTAGCTGATCTGCAACTCACGGTGGAACGCATTGATGAAGAAGATGGTCTCCAATGA Protein sequence
MVGKNLANATKGKGVDKQPLESEILSPRTSTTHMMVVEETVGDINGRLADLQLTVERIDEEDGLQ
Homology
BLAST of PI0019224 vs. ExPASy TrEMBL
Match:
A0A5A7TYL9 (Twinkle-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00560 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0
Query: 1 MVGKNLANATKGKGVDKQPLESEILSPRTSTTHMMVVEETVGDINGRLADLQLTVERI 59 MVG+N ANA KGK D+QP E EIL P+TS ++ VEET+G +N L DLQL ++R+ Sbjct: 96 MVGRNPANAGKGKRFDEQPFEQEILWPKTSIALLLAVEETLGGMNTCLVDLQLAIKRV 153
BLAST of PI0019224 vs. NCBI nr
Match:
KAA0047076.1 (twinkle-like protein [Cucumis melo var. makuwa] >TYK05081.1 twinkle-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 65.1 bits (157), Expect = 2.6e-07
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0
Query: 1 MVGKNLANATKGKGVDKQPLESEILSPRTSTTHMMVVEETVGDINGRLADLQLTVERI 59 MVG+N ANA KGK D+QP E EIL P+TS ++ VEET+G +N L DLQL ++R+ Sbjct: 96 MVGRNPANAGKGKRFDEQPFEQEILWPKTSIALLLAVEETLGGMNTCLVDLQLAIKRV 153
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7TYL9 1.3e-07 55.17 Twinkle-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold131... [more]
Match Name E-value Identity Description
KAA0047076.1 2.6e-07 55.17 twinkle-like protein [Cucumis melo var. makuwa] >TYK05081.1 twinkle-like protein... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
C C A A G A T T C A T C A A A A T T G G T A T C A A A G C T T C T A G G A A G G G A C T C A T G G T G G G A A A A A A C C T A G C C A A T G C C A C C A A A G G G A A G G G T G T C G A T A A G C A A C C C T T G G A G T C G G A A A T T C T T T C A C C A A G G A C T T C A A C T A C A C A C A T G A T G G T C G T T G A A G A G A C T G T G G G A G A C A T T A A C G G T C G T T T A G C T G A T C T G C A A C T C A C G G T G G A A C G C A T T G A T G A A G A A G A T G G T C T C C A A T G A T A A C C C A T G G A C C G A T G G T G G A T T C A A C A A A G T A G A C A T G G C C G A A T T T T T T T C C T C A T C A T G T T G A A G G T C G A T T T C G A G G G A A T C A C C A A C A A G A A T T C A A A A T G A A G G T G G A T T T A C C T A C T T T C A A T G G A A A A C T A G A T A T G G A G A A A T T T C T T G A T T G G A T C A A G A A T G T T G A A A A T T T G T T T A G C 50 100 150 200 250 300 350 400 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..31
Relationships
The following mRNA feature(s) are a part of this gene: