Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGATGTACCTATTACACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGATATTGTGATTTTGAGGTCGGTATAGGATATAATGACTCAGGGGTCGGTCCATCGTCTTCATACATGGATGCCGGACCATCAACTTCTTACATGCATGGACATGGACAAGGACGCGACCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTTTCAGATTCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCTAGGGCAACCAAGAGTTCAGAGTCGACGACGACAACCAACCTAA
mRNA sequence
ATGTACGATGTACCTATTACACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGATATTGTGATTTTGAGGTCGGTATAGGATATAATGACTCAGGGGTCGGTCCATCGTCTTCATACATGGATGCCGGACCATCAACTTCTTACATGCATGGACATGGACAAGGACGCGACCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTTTCAGATTCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCTAGGGCAACCAAGAGTTCAGAGTCGACGACGACAACCAACCTAA
Coding sequence (CDS)
ATGTACGATGTACCTATTACACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGATATTGTGATTTTGAGGTCGGTATAGGATATAATGACTCAGGGGTCGGTCCATCGTCTTCATACATGGATGCCGGACCATCAACTTCTTACATGCATGGACATGGACAAGGACGCGACCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTTTCAGATTCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCTAGGGCAACCAAGAGTTCAGAGTCGACGACGACAACCAACCTAA
Protein sequence
MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYCDFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQQEPENQEELGQPRVQSRRRQPT
Homology
BLAST of PI0027123 vs. ExPASy TrEMBL
Match:
A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)
HSP 1 Score: 227.3 bits (578), Expect = 4.2e-56
Identity = 115/142 (80.99%), Postives = 122/142 (85.92%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PI PP V+RGRVRVEE ELDEVYHNVEEVPP TQTQSQTGYGSPMMMMP FGAGYC
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
D EV GY D+G+GP SSYMD GPS SYMHGHG+G GEHNEYLY+EAP DVSD QEYQ
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRG--YGEHNEYLYHEAPADVSDRQEYQ 120
Query: 121 QEPENQEELGQPRVQSRRRQPT 143
QEPENQE+ Q RVQSRRRQPT
Sbjct: 121 QEPENQEDREQHRVQSRRRQPT 140
BLAST of PI0027123 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 223.8 bits (569), Expect = 4.6e-55
Identity = 114/142 (80.28%), Postives = 122/142 (85.92%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PI PPPV+RG VRVEE ELD+VYHNVEEVP TQTQSQTGYGSPM MMP F AGYC
Sbjct: 72 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
DFEVGIGY D+GVGPSSSY+D PSTSYMHGH +G GEHNEYLY+EAP DVSD QEYQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRG--YGEHNEYLYHEAPADVSDRQEYQ 191
Query: 121 QEPENQEELGQPRVQSRRRQPT 143
QEPENQE+ Q RVQSRRRQPT
Sbjct: 192 QEPENQEDREQHRVQSRRRQPT 211
BLAST of PI0027123 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 223.0 bits (567), Expect = 7.8e-55
Identity = 114/142 (80.28%), Postives = 122/142 (85.92%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PI PPPV+RG VRVEE ELD+VYHNVEEVP TQTQSQTGYGSPM MMP F AGYC
Sbjct: 60 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
DFEVGIGY D+GVGPSSSY+D PSTSYMHGH +G GEHNEYLY+EAP DVSD QEYQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRG--YGEHNEYLYHEAPADVSDRQEYQ 179
Query: 121 QEPENQEELGQPRVQSRRRQPT 143
QEPENQE+ Q RVQSRRRQPT
Sbjct: 180 QEPENQEDREQHRVQSRRRQPT 199
BLAST of PI0027123 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 219.2 bits (557), Expect = 1.1e-53
Identity = 112/141 (79.43%), Postives = 121/141 (85.82%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
+YD+PI PPPV+R R RVEE ELDEVYHNVEEVPP TQTQSQTGYGSPM MMP FGAGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
D EV IGY D+ VGP SSYMD GPSTSYM+GHG+G GEHNEYLY+EAPTDVSD QEYQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRG--YGEHNEYLYHEAPTDVSDRQEYQ 469
Query: 121 QEPENQEELGQPRVQSRRRQP 142
QEP+NQE+ Q RVQSRRRQP
Sbjct: 470 QEPKNQEDREQHRVQSRRRQP 488
BLAST of PI0027123 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 210.3 bits (534), Expect = 5.3e-51
Identity = 106/137 (77.37%), Postives = 115/137 (83.94%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MY +PI PP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MMP FG GYC
Sbjct: 69 MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
DFEV Y DSGVGPSSSYMD GPSTSYMHGH D GEHNEYLY+EAPT+VSD QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGH--RHDYGEHNEYLYHEAPTEVSDRQEYQ 188
Query: 121 QEPENQEELGQPRVQSR 138
QEPENQEEL Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203
BLAST of PI0027123 vs. NCBI nr
Match:
KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 227.3 bits (578), Expect = 8.6e-56
Identity = 115/142 (80.99%), Postives = 122/142 (85.92%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PI PP V+RGRVRVEE ELDEVYHNVEEVPP TQTQSQTGYGSPMMMMP FGAGYC
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
D EV GY D+G+GP SSYMD GPS SYMHGHG+G GEHNEYLY+EAP DVSD QEYQ
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRG--YGEHNEYLYHEAPADVSDRQEYQ 120
Query: 121 QEPENQEELGQPRVQSRRRQPT 143
QEPENQE+ Q RVQSRRRQPT
Sbjct: 121 QEPENQEDREQHRVQSRRRQPT 140
BLAST of PI0027123 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 223.8 bits (569), Expect = 9.5e-55
Identity = 114/142 (80.28%), Postives = 122/142 (85.92%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PI PPPV+RG VRVEE ELD+VYHNVEEVP TQTQSQTGYGSPM MMP F AGYC
Sbjct: 72 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
DFEVGIGY D+GVGPSSSY+D PSTSYMHGH +G GEHNEYLY+EAP DVSD QEYQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRG--YGEHNEYLYHEAPADVSDRQEYQ 191
Query: 121 QEPENQEELGQPRVQSRRRQPT 143
QEPENQE+ Q RVQSRRRQPT
Sbjct: 192 QEPENQEDREQHRVQSRRRQPT 211
BLAST of PI0027123 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 114/142 (80.28%), Postives = 122/142 (85.92%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PI PPPV+RG VRVEE ELD+VYHNVEEVP TQTQSQTGYGSPM MMP F AGYC
Sbjct: 60 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
DFEVGIGY D+GVGPSSSY+D PSTSYMHGH +G GEHNEYLY+EAP DVSD QEYQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRG--YGEHNEYLYHEAPADVSDRQEYQ 179
Query: 121 QEPENQEELGQPRVQSRRRQPT 143
QEPENQE+ Q RVQSRRRQPT
Sbjct: 180 QEPENQEDREQHRVQSRRRQPT 199
BLAST of PI0027123 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 219.2 bits (557), Expect = 2.3e-53
Identity = 112/141 (79.43%), Postives = 121/141 (85.82%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
+YD+PI PPPV+R R RVEE ELDEVYHNVEEVPP TQTQSQTGYGSPM MMP FGAGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
D EV IGY D+ VGP SSYMD GPSTSYM+GHG+G GEHNEYLY+EAPTDVSD QEYQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRG--YGEHNEYLYHEAPTDVSDRQEYQ 469
Query: 121 QEPENQEELGQPRVQSRRRQP 142
QEP+NQE+ Q RVQSRRRQP
Sbjct: 470 QEPKNQEDREQHRVQSRRRQP 488
BLAST of PI0027123 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50
Identity = 106/137 (77.37%), Postives = 115/137 (83.94%), Query Frame = 0
Query: 1 MYDVPITPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MY +PI PP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MMP FG GYC
Sbjct: 69 MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128
Query: 61 DFEVGIGYNDSGVGPSSSYMDAGPSTSYMHGHGQGRDRGEHNEYLYYEAPTDVSDSQEYQ 120
DFEV Y DSGVGPSSSYMD GPSTSYMHGH D GEHNEYLY+EAPT+VSD QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGH--RHDYGEHNEYLYHEAPTEVSDRQEYQ 188
Query: 121 QEPENQEELGQPRVQSR 138
QEPENQEEL Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CXX3 | 4.2e-56 | 80.99 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7V342 | 4.6e-55 | 80.28 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BSG8 | 7.8e-55 | 80.28 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3DJV7 | 1.1e-53 | 79.43 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7SLF8 | 5.3e-51 | 77.37 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0049532.1 | 8.6e-56 | 80.99 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0062642.1 | 9.5e-55 | 80.28 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01176.1 | 1.6e-54 | 80.28 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK23842.1 | 2.3e-53 | 79.43 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0025972.1 | 1.1e-50 | 77.37 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
