PI0018661.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0018661.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr12: 20234893 .. 20235787 (-)
Sequence length	678
RNA-Seq Expression	PI0018661.1
Synteny	PI0018661.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGACGGTGAACAACCGCAATTCGAACTTAACCCTGAAATTAAGCGAACCTTTCGGTGTAATCGGCGAAGAGCGAGGCAGAGACAAGCTAGAAGAATGGAAAACAATAGAAGAAATGCCCCTCCGCCGTATGTTGCCCCAGAACCAAATGCTGCCTACATGGCACATGACTTGGATAGGCCGATTAGATCTTATGTGGCATCTAACTTCTACAACTTTAACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAACGCTAGGTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAACGCCGGACAATTCGGCGGTCACCCTGGAGAGGATCCACATGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATTTCACCTGAAAAATTGAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGACGAAGAGGTGGGCCAACGCTTTGGAAGATGGCGAGGTGGGAACATGGGACCAACTAATAGACAAATTTATGAAGAAAATTTTCCCACCTCACGAAAATGTCAGAAGAAGGAAGGAGCTTATGGGCTTCCAGTAGAAGGATAGAGAAAACCTACATGACGCGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATGCCTCTAATGGCATTCCTGAATGCATACTGATGGAGGTTTTCTATTTTGGGCTAAACAAGGTTACACAGCAGACTGCTGATGCTGTGTTTGTAGGCGGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACGCTGGATACAATGGCCAACAACAATGAAGAATGGGATGAAGATAATTTAGGCAATCGCCGAGGAGGACGATCAAGAGGTGATAAAGGCATGGATAAGAGTGTCGTGGTGGCGTTGCAATGA

mRNA sequence

ATGAGTGACGGTGAACAACCGCAATTCGAACTTAACCCTGAAATTAAGCGAACCTTTCGGTGTAATCGGCGAAGAGCGAGGCAGAGACAAGCTAGAAGAATGGAAAACAATAGAAGAAATGCCCCTCCGCCGTATGTTGCCCCAGAACCAAATGCTGCCTACATGGCACATGACTTGGATAGGCCGATTAGATCTTATGTGGCATCTAACTTCTACAACTTTAACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAACGCTAGGTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAACGCCGGACAATTCGGCGGTCACCCTGGAGAGGATCCACATGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATTTCACCTGAAAAATTGAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGACGAAGAGGTGGGCCAACGCTTTGGAAGATGGCGAGGTTACACAGCAGACTGCTGATGCTGTGTTTGTAGGCGGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACGCTGGATACAATGGCCAACAACAATGAAGAATGGGATGAAGATAATTTAGGCAATCGCCGAGGAGGACGATCAAGAGGTGATAAAGGCATGGATAAGAGTGTCGTGGTGGCGTTGCAATGA

Coding sequence (CDS)

ATGAGTGACGGTGAACAACCGCAATTCGAACTTAACCCTGAAATTAAGCGAACCTTTCGGTGTAATCGGCGAAGAGCGAGGCAGAGACAAGCTAGAAGAATGGAAAACAATAGAAGAAATGCCCCTCCGCCGTATGTTGCCCCAGAACCAAATGCTGCCTACATGGCACATGACTTGGATAGGCCGATTAGATCTTATGTGGCATCTAACTTCTACAACTTTAACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAACGCTAGGTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAACGCCGGACAATTCGGCGGTCACCCTGGAGAGGATCCACATGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATTTCACCTGAAAAATTGAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGACGAAGAGGTGGGCCAACGCTTTGGAAGATGGCGAGGTTACACAGCAGACTGCTGATGCTGTGTTTGTAGGCGGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACGCTGGATACAATGGCCAACAACAATGAAGAATGGGATGAAGATAATTTAGGCAATCGCCGAGGAGGACGATCAAGAGGTGATAAAGGCATGGATAAGAGTGTCGTGGTGGCGTTGCAATGA

Protein sequence

MSDGEQPQFELNPEIKRTFRCNRRRARQRQARRMENNRRNAPPPYVAPEPNAAYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVMLQMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEKLRFALFPLTLRDETKRWANALEDGEVTQQTADAVFVGGMLKSSYNQIKATLDTMANNNEEWDEDNLGNRRGGRSRGDKGMDKSVVVALQ

Homology

[Close]

BLAST of PI0018661.1 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-32
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 37  NRRNAPPPYVAPEPNAAYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVML 96
           N +  P    A   N  Y+A D DRPIRSY + N Y+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 97  QMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEKLRFALFPL 145
           Q+IQNAGQF  HP +DPH++IR+FYSICASFHMPGIS E+LRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

[Close]

BLAST of PI0018661.1 vs. ExPASy TrEMBL
Match: A0A5A7TNS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00350 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 0


Query: 51  NAAYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVMLQMIQNAGQFGGHPG 110
           N   +AH+L+ PI  Y + + Y FN GI YP FG NARF++KP ML MIQ   QFGG+  
Sbjct: 39  NPILIAHNLNNPINEYASPDLYVFNLGITYPAFG-NARFKMKPTMLHMIQTTVQFGGYLD 98

Query: 111 EDPHEHIRSFYSICASFHMPGISPEKLRFALFPLTLRDETKRWANALEDGEVTQQTADAV 170
           EDP +HI+S Y +C+SFH+P +S E L    F  TL+D+ K+W   LE    TQ   D +
Sbjct: 99  EDPQDHIKSIYVMCSSFHLPCLSQEDLHITYFTFTLKDDIKKWVGTLEVARATQPNVDPM 158

Query: 171 F--VGGMLKSSYNQIKATLDTMANNNE 196
           F   G +++ +Y QIK TLD M+ N+E
Sbjct: 159 FTRAGELMRKTYTQIKDTLDIMSRNHE 184

[Close]

BLAST of PI0018661.1 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 37  NRRNAPPPYVAPEPNAAYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVML 96
           N +N P      E N AY+AHDLD+PI+SY + N Y+FNPGIAY  FGEN  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 97  QMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGIS 134
            M QNAGQFGGHP EDP++HIR+FY ICASF+M  IS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

[Close]

BLAST of PI0018661.1 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.9e-27
Identity = 64/102 (62.75%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 34  MENNRRNAPPPYVAP--EPNAAYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEI 93
           M +N+ N  P   A   + N   +AH+LD PIR+Y + N Y+FN GIAY VFGENA FE+
Sbjct: 1   MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 94  KPVMLQMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGIS 134
           KPVMLQMIQ AGQF G+ GEDPHEHI+SFYSICASFHM   S
Sbjct: 61  KPVMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

[Close]

BLAST of PI0018661.1 vs. ExPASy TrEMBL
Match: U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 56/115 (48.70%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 49  EPNAAYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVMLQMIQNAGQFGGH 108
           E N   +A D  R IR Y A  F   N GI  P   +   FE+KPVM QM+Q  GQFGG 
Sbjct: 11  EANPIALADDRARAIREYAAPMFNELNSGIVRPEI-QAPHFELKPVMFQMLQTVGQFGGS 70

Query: 109 PGEDPHEHIRSFYSICASFHMPGISPEKLRFALFPLTLRDETKRWANALEDGEVT 164
           P EDPH HIRSF  +  SF + G+S E LR  LFP +LRD  + W N L    VT
Sbjct: 71  PTEDPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVT 124

[Close]

BLAST of PI0018661.1 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 163.3 bits (412), Expect = 2.4e-36
Identity = 82/180 (45.56%), Postives = 113/180 (62.78%), Query Frame = 0


Query: 1   MSDGEQPQFELNPEIKRTFRCNRRRARQRQARR-------MENNRRNAPPPYVAPEPNA- 60
           MS+G+ P F+++PEI+RTFR   R+ +QR++ +        + N+  AP   V    NA 
Sbjct: 2   MSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANAQ 61

Query: 61  ---------AYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVMLQMIQNAG 120
                      +AHD +RP+R Y + N YNF PGI  P F  N RFE+KPVMLQM+Q AG
Sbjct: 62  EHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAAG 121

Query: 121 QFGGHPGEDPHEHIRSFYSICASFHMPGISPEKLRFALFPLTLRDETKRWANALEDGEVT 164
           QFGG  GEDPH H++SF  IC++F M G+  + +R  LFP +LRDE ++WA + E GE+T
Sbjct: 122 QFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSFEPGEIT 181

[Close]

BLAST of PI0018661.1 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-32
Identity = 79/168 (47.02%), Postives = 107/168 (63.69%), Query Frame = 0


Query: 1   MSDGEQPQFELNPEIKRTF--RCNRRRARQRQARRMENNRRNAPPPYVA---PEPNAAYM 60
           MS    P+FE NPEI  TF  R ++ RA +R+    +NN   AP        P  +  ++
Sbjct: 1   MSTRTDPEFEANPEIDHTFRTRAHQNRAWRRRINMADNNNNEAPEGNQGVNRPVQDPVFL 60

Query: 61  AHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVMLQMIQNAGQFGGHPGEDPHE 120
           A D + PIR+Y A N Y+F+PGI+ P+  ENARFEIKPVM+QMIQN  QF     E+PH 
Sbjct: 61  AADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEIKPVMVQMIQNMRQFESLQCENPHA 120

Query: 121 HIRSFYSICASFHMPGISPEKLRFALFPLTLRDETKRWANALEDGEVT 164
           H+  F  +C++F +PGI+P  +R  LFP TLRD+ KRWA++LE  E+T
Sbjct: 121 HLTIFVEMCSTFSIPGITPVGIRLYLFPYTLRDKAKRWAHSLEANEIT 168

[Close]

BLAST of PI0018661.1 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-31
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 37  NRRNAPPPYVAPEPNAAYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVML 96
           N +  P    A   N  Y+A D DRPIRSY + N Y+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 97  QMIQNAGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEKLRFALFPL 145
           Q+IQNAGQF  HP +DPH++IR+FYSICASFHMPGIS E+LRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

[Close]

BLAST of PI0018661.1 vs. NCBI nr
Match: KAA0045193.1 (hypothetical protein E6C27_scaffold30G001940 [Cucumis melo var. makuwa] >TYK27359.1 hypothetical protein E5676_scaffold325G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-31
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 0


Query: 51  NAAYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVMLQMIQNAGQFGGHPG 110
           N   +AH+L+ PI  Y + + Y FN GI YP FG NARF++KP ML MIQ   QFGG+  
Sbjct: 39  NPILIAHNLNNPINEYASPDLYVFNLGITYPAFG-NARFKMKPTMLHMIQTTVQFGGYLD 98

Query: 111 EDPHEHIRSFYSICASFHMPGISPEKLRFALFPLTLRDETKRWANALEDGEVTQQTADAV 170
           EDP +HI+S Y +C+SFH+P +S E L    F  TL+D+ K+W   LE    TQ   D +
Sbjct: 99  EDPQDHIKSIYVMCSSFHLPCLSQEDLHITYFTFTLKDDIKKWVGTLEVARATQPNVDPM 158

Query: 171 F--VGGMLKSSYNQIKATLDTMANNNE 196
           F   G +++ +Y QIK TLD M+ N+E
Sbjct: 159 FTRAGELMRKTYTQIKDTLDIMSRNHE 184

[Close]

BLAST of PI0018661.1 vs. NCBI nr
Match: XP_038874908.1 (uncharacterized protein LOC120067411 [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 7.5e-30
Identity = 68/155 (43.87%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 51  NAAYMAHDLDRPIRSYVASNFYNFNPGIAYPVFGENARFEIKPVMLQMIQNAGQFGGHPG 110
           N   MA+   RP+R Y +   Y+F+P I YP   +  RFE+K VMLQM+Q AGQF G  G
Sbjct: 20  NPIIMANSSTRPMREYASPGLYDFSPTIIYPT-PDGTRFEMKSVMLQMLQTAGQFRGARG 79

Query: 111 EDPHEHIRSFYSICASFHMPGISPEKLRFALFPLTLRDETKRWANALEDGEVTQQTADAV 170
           EDPH H++ F   C SF +PGI+PE +R +LFP +LRD+ K+W    +    +Q  ADA 
Sbjct: 80  EDPHAHMKCFLETCNSFVIPGITPEAIRLSLFPYSLRDDAKQWMCIRDRNRASQMVADAA 139

Query: 171 FVGGMLKSSYNQIKATLDTMANNNEEWDEDNLGNR 206
             G ++  SY + K  LD +A +N EW +D    R
Sbjct: 140 AAGSIMDKSYTEAKEILDHIAKHNMEWVDDTYDAR 173

The following BLAST results are available for this feature:

BLAST of PI0018661.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018661.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2U7	5.1e-32	64.81	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7TNS8	1.9e-31	46.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UDN8	1.7e-27	63.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BVN1	4.9e-27	62.75	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]
U5CUK7	4.0e-21	48.70	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640...	[more]

BLAST of PI0018661.1 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833177.1	2.4e-36	45.56	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
XP_038887458.1	1.6e-32	47.02	uncharacterized protein LOC120077591 [Benincasa hispida]	[more]
KAA0062403.1	1.0e-31	64.81	putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0045193.1	4.0e-31	46.94	hypothetical protein E6C27_scaffold30G001940 [Cucumis melo var. makuwa] >TYK2735...	[more]
XP_038874908.1	7.5e-30	43.87	uncharacterized protein LOC120067411 [Benincasa hispida]	[more]

BLAST of PI0018661.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 180..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..216

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0018661	PI0018661	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0018661.1-exon	PI0018661.1-exon-chr12:20234893..20235087	exon
PI0018661.1-exon	PI0018661.1-exon-chr12:20235305..20235787	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0018661.1-cds	PI0018661.1-cds-chr12:20234893..20235087	CDS
PI0018661.1-cds	PI0018661.1-cds-chr12:20235305..20235787	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0018661.1	PI0018661.1-protein	polypeptide