Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGCGAGTCAAAGAATGAGTGGATCCAAATCTCTGATGTAACAACACCTTGTGTGATTGATTTTGCAAAACATGCTGTGGATGACCACAACAAAGCAAAAGGAGATAACCTTGTATTCAAAAAGGTTATAATCGGATGGTATTTGGAGATAGATTATGATAAAACAAAGATTCGTCTTATTATTGAAGCAACAAACAGTAAGGGAGAAGTAATAATATTTGAAGGAGTGATTGTGGTAGATGAAAAAGATGGACAAAAAGCGAAGACATCCATTTCATTCGTTCCTGGGTATATAGATGTGAAGAATCCATTGTTATTTTGGATTAAAATTCATAATGTTAACGAGCCTCATGTGCAAGAAATTGCAAAGTTTGCAGTGGATAAGCATAACAAGGATACTAATGACAGTCTTGTATACATTTGCACCACTGAAGGCTGGTATTATGTGTCTAATCCAATTGTTACAGTATTTAAACTTCATCTTAAGGCCAAGGATTGCTTGGGACGTGTGCGGGAGTACGAAGCTTTGGTTCGAGAAGAGAAACCGCCTACTGGGAAAATTCTGATACTTGAATATTTCAAAGTTATACCAAAGATATGTTGA
mRNA sequence
ATGAGTTGCGAGTCAAAGAATGAGTGGATCCAAATCTCTGATGTAACAACACCTTGTGTGATTGATTTTGCAAAACATGCTGTGGATGACCACAACAAAGCAAAAGGAGATAACCTTGTATTCAAAAAGGTTATAATCGGATGGTATTTGGAGATAGATTATGATAAAACAAAGATTCGTCTTATTATTGAAGCAACAAACAGTAAGGGAGAAGTAATAATATTTGAAGGAGTGATTGTGGTAGATGAAAAAGATGGACAAAAAGCGAAGACATCCATTTCATTCGTTCCTGGGTATATAGATGCCAAGGATTGCTTGGGACGTGTGCGGGAGTACGAAGCTTTGGTTCGAGAAGAGAAACCGCCTACTGGGAAAATTCTGATACTTGAATATTTCAAAGTTATACCAAAGATATGTTGA
Coding sequence (CDS)
ATGAGTTGCGAGTCAAAGAATGAGTGGATCCAAATCTCTGATGTAACAACACCTTGTGTGATTGATTTTGCAAAACATGCTGTGGATGACCACAACAAAGCAAAAGGAGATAACCTTGTATTCAAAAAGGTTATAATCGGATGGTATTTGGAGATAGATTATGATAAAACAAAGATTCGTCTTATTATTGAAGCAACAAACAGTAAGGGAGAAGTAATAATATTTGAAGGAGTGATTGTGGTAGATGAAAAAGATGGACAAAAAGCGAAGACATCCATTTCATTCGTTCCTGGGTATATAGATGCCAAGGATTGCTTGGGACGTGTGCGGGAGTACGAAGCTTTGGTTCGAGAAGAGAAACCGCCTACTGGGAAAATTCTGATACTTGAATATTTCAAAGTTATACCAAAGATATGTTGA
Protein sequence
MSCESKNEWIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIRLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYIDAKDCLGRVREYEALVREEKPPTGKILILEYFKVIPKIC
Homology
BLAST of PI0012338 vs. ExPASy TrEMBL
Match:
A0A0A0K7B3 (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222870 PE=4 SV=1)
HSP 1 Score: 210.3 bits (534), Expect = 5.1e-51
Identity = 107/141 (75.89%), Postives = 117/141 (82.98%), Query Frame = 0
Query: 1 MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
MS +SKN+ WIQI D TPCVID K+AVDD+NKA DNLVFKKVIIGWYLEIDYDKTK+
Sbjct: 1 MSSDSKNDKWIQIPDTKTPCVIDLGKYAVDDYNKAHKDNLVFKKVIIGWYLEIDYDKTKL 60
Query: 61 RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID-AKDCLGRVREYEALVRE 120
RLIIE NSKGEVII+E VIVVD+KDG+K KT ISF+PGYID AKDCLGRVR+YEALV E
Sbjct: 61 RLIIEVVNSKGEVIIYEVVIVVDDKDGKKVKTPISFIPGYIDEAKDCLGRVRDYEALVEE 120
Query: 121 EKPPTGKILILEYFKVIPKIC 140
EK IL L YFKVIPK C
Sbjct: 121 EKKLPNAILKLIYFKVIPKKC 141
BLAST of PI0012338 vs. ExPASy TrEMBL
Match:
A0A1S3BHQ3 (uncharacterized protein LOC103489701 OS=Cucumis melo OX=3656 GN=LOC103489701 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 6.5e-46
Identity = 110/204 (53.92%), Postives = 120/204 (58.82%), Query Frame = 0
Query: 1 MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
MSCE+K E WIQI D TTPCVI+F KHAVDDHNK KGDNLVFKKVIIGWYLEIDY+KTK+
Sbjct: 1 MSCETKKEQWIQIHDTTTPCVINFGKHAVDDHNKEKGDNLVFKKVIIGWYLEIDYNKTKL 60
Query: 61 RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
RLIIE NSKGEVI FE VIVVD+KDG+ KT ISFVPG+ID
Sbjct: 61 RLIIEVVNSKGEVITFEVVIVVDDKDGKTVKTVISFVPGHIDEKNPWTFWIKIHNVTEPH 120
Query: 121 ----------------------------------------------AKDCLGRVREYEAL 140
AKDCLGRVREYEAL
Sbjct: 121 VQEIAKFAVEEHNKITHDNLIYICIIEGWYHVSTIPPVTLWKLHLKAKDCLGRVREYEAL 180
BLAST of PI0012338 vs. ExPASy TrEMBL
Match:
A0A5A7TFI4 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001740 PE=4 SV=1)
HSP 1 Score: 191.0 bits (484), Expect = 3.2e-45
Identity = 111/205 (54.15%), Postives = 121/205 (59.02%), Query Frame = 0
Query: 1 MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
MSCE+K E WIQI D TTPCVI+F KHAVDDHNK KGDNLVFKKVIIGWYLEIDY+KTK+
Sbjct: 1 MSCETKKEQWIQIHDTTTPCVINFGKHAVDDHNKEKGDNLVFKKVIIGWYLEIDYNKTKL 60
Query: 61 RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
RLIIE NSKGEVI FE VIVVD+KDG+ KT ISFVPG+ID
Sbjct: 61 RLIIEVVNSKGEVITFEVVIVVDDKDGKTVKTVISFVPGHIDEKNPWTFWIKIHNVTEPH 120
Query: 121 ----------------------------------------------AKDCLGRVREYEAL 140
AKDCLGRVREYEAL
Sbjct: 121 VQEIAKFAVEEHNKITHDNLIYICIIEGWYHVPTIPLVTLWKLHLKAKDCLGRVREYEAL 180
BLAST of PI0012338 vs. ExPASy TrEMBL
Match:
A0A0A0K3W6 (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222880 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 80/198 (40.40%), Postives = 104/198 (52.53%), Query Frame = 0
Query: 1 MSCESKNEWIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIR 60
MSC+SK WI+I D TTPCV + AK V+ HNKA GD+LV+K+VI+GW+ EID K R
Sbjct: 1 MSCDSKKTWIKIPDCTTPCVNEVAKDGVNQHNKASGDSLVYKRVIVGWFWEIDDHAIKHR 60
Query: 61 LIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------- 120
LIIE SKG V+I+E +IVV +KDG++ +T ISF+PGY+D
Sbjct: 61 LIIEVVTSKGVVLIYELIIVVVQKDGKRVRTLISFLPGYLDEKNPLIFWIKIPDVKKSCV 120
Query: 121 --------------------------------------------AKDCLGRVREYEALVR 136
AK+C+GRVR+Y A+V+
Sbjct: 121 QDCAKWAVTEHNKITHDYLAYDSTVEGWYHEVNPFVIIFKLHIKAKECIGRVRDYIAVVK 180
BLAST of PI0012338 vs. ExPASy TrEMBL
Match:
A0A5D3D2J2 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001660 PE=4 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 4.7e-28
Identity = 83/203 (40.89%), Postives = 102/203 (50.25%), Query Frame = 0
Query: 1 MSCESKNEWIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIR 60
MSC SK EWI+I D TPCVI+ AK AV+ HNKA GDNLVFK+VIIGW+LEID K R
Sbjct: 1 MSCGSKKEWIKIPDCNTPCVIEVAKDAVNQHNKASGDNLVFKRVIIGWFLEIDDHTIKHR 60
Query: 61 LIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGY--------------------- 120
L IE NSKG V+I VIVV KDG++ +T +S GY
Sbjct: 61 LYIEVINSKGVVLIISIVIVVVTKDGKRVRTLVSSHHGYPDEKDLFIFWNKIPDVNQPCV 120
Query: 121 --------------------------------------------IDAKDCLGRVREYEAL 138
I AK+C+GRVR+Y A+
Sbjct: 121 QNVAKWAVNKHNTDTHDHLVYVSTVEGWYIEAADHSGTLVYKLHIKAKECIGRVRDYCAV 180
BLAST of PI0012338 vs. NCBI nr
Match:
XP_008447193.1 (PREDICTED: uncharacterized protein LOC103489701 [Cucumis melo])
HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 110/204 (53.92%), Postives = 120/204 (58.82%), Query Frame = 0
Query: 1 MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
MSCE+K E WIQI D TTPCVI+F KHAVDDHNK KGDNLVFKKVIIGWYLEIDY+KTK+
Sbjct: 1 MSCETKKEQWIQIHDTTTPCVINFGKHAVDDHNKEKGDNLVFKKVIIGWYLEIDYNKTKL 60
Query: 61 RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
RLIIE NSKGEVI FE VIVVD+KDG+ KT ISFVPG+ID
Sbjct: 61 RLIIEVVNSKGEVITFEVVIVVDDKDGKTVKTVISFVPGHIDEKNPWTFWIKIHNVTEPH 120
Query: 121 ----------------------------------------------AKDCLGRVREYEAL 140
AKDCLGRVREYEAL
Sbjct: 121 VQEIAKFAVEEHNKITHDNLIYICIIEGWYHVSTIPPVTLWKLHLKAKDCLGRVREYEAL 180
BLAST of PI0012338 vs. NCBI nr
Match:
KAA0041963.1 (Phloem filament protein [Cucumis melo var. makuwa] >TYK17898.1 Phloem filament protein [Cucumis melo var. makuwa])
HSP 1 Score: 191.0 bits (484), Expect = 6.7e-45
Identity = 111/205 (54.15%), Postives = 121/205 (59.02%), Query Frame = 0
Query: 1 MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
MSCE+K E WIQI D TTPCVI+F KHAVDDHNK KGDNLVFKKVIIGWYLEIDY+KTK+
Sbjct: 1 MSCETKKEQWIQIHDTTTPCVINFGKHAVDDHNKEKGDNLVFKKVIIGWYLEIDYNKTKL 60
Query: 61 RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
RLIIE NSKGEVI FE VIVVD+KDG+ KT ISFVPG+ID
Sbjct: 61 RLIIEVVNSKGEVITFEVVIVVDDKDGKTVKTVISFVPGHIDEKNPWTFWIKIHNVTEPH 120
Query: 121 ----------------------------------------------AKDCLGRVREYEAL 140
AKDCLGRVREYEAL
Sbjct: 121 VQEIAKFAVEEHNKITHDNLIYICIIEGWYHVPTIPLVTLWKLHLKAKDCLGRVREYEAL 180
BLAST of PI0012338 vs. NCBI nr
Match:
XP_031745077.1 (multicystatin [Cucumis sativus])
HSP 1 Score: 186.4 bits (472), Expect = 1.6e-43
Identity = 107/203 (52.71%), Postives = 117/203 (57.64%), Query Frame = 0
Query: 1 MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
MS +SKN+ WIQI D TPCVID K+AVDD+NKA DNLVFKKVIIGWYLEIDYDKTK+
Sbjct: 1 MSSDSKNDKWIQIPDTKTPCVIDLGKYAVDDYNKAHKDNLVFKKVIIGWYLEIDYDKTKL 60
Query: 61 RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
RLIIE NSKGEVII+E VIVVD+KDG+K KT ISF+PGYID
Sbjct: 61 RLIIEVVNSKGEVIIYEVVIVVDDKDGKKVKTPISFIPGYIDEVDPWLFWFRIIDINDPH 120
Query: 121 ---------------------------------------------AKDCLGRVREYEALV 140
AKDCLGRVR+YEALV
Sbjct: 121 VQQIAKFAVEKHNQDNNDSLVYISTIVCWYRLLSPILKQYKVYLKAKDCLGRVRDYEALV 180
BLAST of PI0012338 vs. NCBI nr
Match:
KAE8646075.1 (hypothetical protein Csa_016329 [Cucumis sativus])
HSP 1 Score: 176.8 bits (447), Expect = 1.3e-40
Identity = 102/197 (51.78%), Postives = 112/197 (56.85%), Query Frame = 0
Query: 1 MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
MS +SKN+ WIQI D TPCVID K+AVDD+NKA DNLVFKKVIIGWYLEIDYDKTK+
Sbjct: 1 MSSDSKNDKWIQIPDTKTPCVIDLGKYAVDDYNKAHKDNLVFKKVIIGWYLEIDYDKTKL 60
Query: 61 RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
RLIIE NSKGEVII+E VIVVD+KDG+K KT ISF+PGYID
Sbjct: 61 RLIIEVVNSKGEVIIYEVVIVVDDKDGKKVKTPISFIPGYIDEVDPWLFWFRIIDINDPH 120
Query: 121 ---------------------------------------------AKDCLGRVREYEALV 134
AKDCLGRVR+YEALV
Sbjct: 121 VQQIAKFAVEKHNQDNNDSLVYISTIVCWYRLLSPILKQYKVYLKAKDCLGRVRDYEALV 180
BLAST of PI0012338 vs. NCBI nr
Match:
KAA0041955.1 (Phloem filament protein [Cucumis melo var. makuwa] >TYK17890.1 Phloem filament protein [Cucumis melo var. makuwa])
HSP 1 Score: 134.0 bits (336), Expect = 9.7e-28
Identity = 83/203 (40.89%), Postives = 102/203 (50.25%), Query Frame = 0
Query: 1 MSCESKNEWIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIR 60
MSC SK EWI+I D TPCVI+ AK AV+ HNKA GDNLVFK+VIIGW+LEID K R
Sbjct: 1 MSCGSKKEWIKIPDCNTPCVIEVAKDAVNQHNKASGDNLVFKRVIIGWFLEIDDHTIKHR 60
Query: 61 LIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGY--------------------- 120
L IE NSKG V+I VIVV KDG++ +T +S GY
Sbjct: 61 LYIEVINSKGVVLIISIVIVVVTKDGKRVRTLVSSHHGYPDEKDLFIFWNKIPDVNQPCV 120
Query: 121 --------------------------------------------IDAKDCLGRVREYEAL 138
I AK+C+GRVR+Y A+
Sbjct: 121 QNVAKWAVNKHNTDTHDHLVYVSTVEGWYIEAADHSGTLVYKLHIKAKECIGRVRDYCAV 180
BLAST of PI0012338 vs. TAIR 10
Match:
AT4G16500.1 (Cystatin/monellin superfamily protein )
HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0
Query: 12 ISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIRLIIEATNSKGE 71
I +V+ P V+ AK+A+++HNK + LVF KV+ G + TK L I A + G+
Sbjct: 35 IKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVV--SGTKYDLKIAAKDGGGK 94
Query: 72 VIIFEGVIV 81
+ +E V+V
Sbjct: 95 IKNYEAVVV 101
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K7B3 | 5.1e-51 | 75.89 | Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222870 PE=4 SV=1 | [more] |
A0A1S3BHQ3 | 6.5e-46 | 53.92 | uncharacterized protein LOC103489701 OS=Cucumis melo OX=3656 GN=LOC103489701 PE=... | [more] |
A0A5A7TFI4 | 3.2e-45 | 54.15 | Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0K3W6 | 1.5e-29 | 40.40 | Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222880 PE=4 SV=1 | [more] |
A0A5D3D2J2 | 4.7e-28 | 40.89 | Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
XP_008447193.1 | 1.3e-45 | 53.92 | PREDICTED: uncharacterized protein LOC103489701 [Cucumis melo] | [more] |
KAA0041963.1 | 6.7e-45 | 54.15 | Phloem filament protein [Cucumis melo var. makuwa] >TYK17898.1 Phloem filament p... | [more] |
XP_031745077.1 | 1.6e-43 | 52.71 | multicystatin [Cucumis sativus] | [more] |
KAE8646075.1 | 1.3e-40 | 51.78 | hypothetical protein Csa_016329 [Cucumis sativus] | [more] |
KAA0041955.1 | 9.7e-28 | 40.89 | Phloem filament protein [Cucumis melo var. makuwa] >TYK17890.1 Phloem filament p... | [more] |
Match Name | E-value | Identity | Description | |
AT4G16500.1 | 1.6e-04 | 36.23 | Cystatin/monellin superfamily protein | [more] |