PI0019060 (gene) Melon (PI 482460) v1

Overview


Name	PI0019060
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	mRNA decay activator protein ZFP36L2-like isoform X2
Location	chr01: 13380338 .. 13382386 (+)
RNA-Seq Expression	PI0019060
Synteny	PI0019060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCACTATGCTAGCAGCGCTTCTGGAAGCAATAGCTTTGGTTCTCGGGGAGCAGGGTTGTCATTGTCACCACTTACGGCGATTGAGAATTTGGAAACACCACCTGTAAGGTCTCCACAAATTTATGGAACTCCCATGAAGGTCGATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAGTTCGATTCATGGGGAAGCAAAGACGGTGAGGTCTCCTTTAGATTCGGGAAGTGGTGGAGGGGGGAAAAATCAATACAGATCGGACATTTGCCGCTACTGGGAGGATTCTGGTAGCTGCCGCTTTGGCAACAAATGCCAGGTTAGTTATTTTGTCCCTACCGTAATGATTTGATCTGAATTATTGGCTCTGCAAATTTATTGGCCTGTTGTTTATTACTTGAAGGACACCTTACCTCTTCCTTGAGATTTGATTGCTAATATAAGACAAATGGATAAAAAGATATTTACCATTTTAAGGAATGGTATGATTAAAGATTAGTCGTTCGTGTTCAAGTTTAATTGGTGAAATTATTTATTTATTATTTAACGTTGGTTAATTTTCCATTTATTCTTGTTCATATGGGTAGACTGAATTAATTTTTTATAGAATAGCTTGATTGAAATAATTGATGCATTCAGAGAGCGGTACCGGTACAGGATGAGTTAATGTCTCCTTGCCTAGGTTTTATGAGAAAATTCCGAGGCTGATTCAAAGATGGAATACATATCCCACTCCCAATTTTGGTTAAAATTTGGTATCAGATAATGAACTCAGTTCTAATGTGTTAATATATAGAGTGAAACAGTAGGTTGGCTGCAAAAATTGATGCACTTATGTGTTATCACAACAAGTTATTAGATTAGCAGATAAATGAACCTATACCTTTTTCAAAAGTTGGATTAATCATATACTTTGGGATGCCCGACATTCCTTTTCAGTGGTTGGATTCCAGTATCTATGGATCACCGACATCATGTGCTATTGATTTCTAATAATGGATATATTATTCAATTTCTTGGGTATATAATTCAAATTTTGGGGGACGGGGACTTGGGATTGGATCCTCCTCCTATTTAATACTTTCAAGTAATTAGATTGGCTGATTTTTTTCCAAGAATAGGACCAAAAGCTCTCTATCTGAAATGTAGTTAATTAAATATTTTGTTTAGTTACTTATCATTCACCGAAAAGTTTGGGGCCCTTTTTAATTTTTTATGTAACTGTCTTGTATTTATTATGGTGTATATACAGGAAAGAGTTTGTATTGAGAACCTCATAGCTATTTTAATACCATATAAAACTATAATTAAACTCAAAAGCTTAGAATTATTGGTTAAATTGTGATTCACACGTCACAGCATGCTACACTTTTCTAATAATATTTTCAACCATACATGTTGAAATAAATTAACGGGAAATATAAGATTAGCTAATATTACACGGTAGTTTAGTTTTTATGAATTGTATTTTCTGTTTGCAGTTTGCGCACGGAAAGGAGGACCTTCGGCCAGGTCGTTTACCAGTTAGAACCAAGACTAAGGTACCATTGACATCTAATAAATTAAATATACTACAGGTTTTGTTCGGATAAAAGACACTTTTAGATTTGCATATTCTTCGCCACTACAGTTCAGCGAAACGTATGGTTCCAAGTTCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACCACAACGCAATCAAACTCAAACTTAGTAGATACAATCACCAAAACTGAACTAAGCAAAAGAGAAGGTCTTACTCCAACATCCTCGACTTCAAAATGGTACATGAACACTAACCCTACCCTTATTTCGACCATTTCCATCATCGATTGGTCGCCAGAAGATGATGGCATGAAAGATTGGTCGCCTGAAGATGATGGCATCAAAATTGTTGTCCCCGGAACAGAGTCGACAAAAAGAGAAGATGTAAACCAACACATCCATGAGGTTCTTTATGGTTCCACCACTGAGAGGACCAAAAAGGGACTCCCAGTTTTCATTAAACTTTGCTCTGAAGAAATACAAGAAGAATAA

mRNA sequence

ATGAATCACTATGCTAGCAGCGCTTCTGGAAGCAATAGCTTTGGTTCTCGGGGAGCAGGGTTGTCATTGTCACCACTTACGGCGATTGAGAATTTGGAAACACCACCTGTAAGGTCTCCACAAATTTATGGAACTCCCATGAAGGTCGATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAGTTCGATTCATGGGGAAGCAAAGACGGTGAGGTCTCCTTTAGATTCGGGAAGTGGTGGAGGGGGGAAAAATCAATACAGATCGGACATTTGCCGCTACTGGGAGGATTCTGGTAGCTGCCGCTTTGGCAACAAATGCCAGTTTGCGCACGGAAAGGAGGACCTTCGGCCAGGTCGTTTACCAGTTAGAACCAAGACTAAGTTCAGCGAAACGTATGGTTCCAAGTTCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACCACAACGCAATCAAACTCAAACTTAGTAGATACAATCACCAAAACTGAACTAAGCAAAAGAGAAGGTCTTACTCCAACATCCTCGACTTCAAAATGGTACATGAACACTAACCCTACCCTTATTTCGACCATTTCCATCATCGATTGGTCGCCAGAAGATGATGGCATGAAAGATTGGTCGCCTGAAGATGATGGCATCAAAATTGTTGTCCCCGGAACAGAGTCGACAAAAAGAGAAGATGTAAACCAACACATCCATGAGGTTCTTTATGGTTCCACCACTGAGAGGACCAAAAAGGGACTCCCAGTTTTCATTAAACTTTGCTCTGAAGAAATACAAGAAGAATAA

Coding sequence (CDS)

ATGAATCACTATGCTAGCAGCGCTTCTGGAAGCAATAGCTTTGGTTCTCGGGGAGCAGGGTTGTCATTGTCACCACTTACGGCGATTGAGAATTTGGAAACACCACCTGTAAGGTCTCCACAAATTTATGGAACTCCCATGAAGGTCGATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAGTTCGATTCATGGGGAAGCAAAGACGGTGAGGTCTCCTTTAGATTCGGGAAGTGGTGGAGGGGGGAAAAATCAATACAGATCGGACATTTGCCGCTACTGGGAGGATTCTGGTAGCTGCCGCTTTGGCAACAAATGCCAGTTTGCGCACGGAAAGGAGGACCTTCGGCCAGGTCGTTTACCAGTTAGAACCAAGACTAAGTTCAGCGAAACGTATGGTTCCAAGTTCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACCACAACGCAATCAAACTCAAACTTAGTAGATACAATCACCAAAACTGAACTAAGCAAAAGAGAAGGTCTTACTCCAACATCCTCGACTTCAAAATGGTACATGAACACTAACCCTACCCTTATTTCGACCATTTCCATCATCGATTGGTCGCCAGAAGATGATGGCATGAAAGATTGGTCGCCTGAAGATGATGGCATCAAAATTGTTGTCCCCGGAACAGAGTCGACAAAAAGAGAAGATGTAAACCAACACATCCATGAGGTTCTTTATGGTTCCACCACTGAGAGGACCAAAAAGGGACTCCCAGTTTTCATTAAACTTTGCTCTGAAGAAATACAAGAAGAATAA

Protein sequence

MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGILISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREGLTPTSSTSKWYMNTNPTLISTISIIDWSPEDDGMKDWSPEDDGIKIVVPGTESTKREDVNQHIHEVLYGSTTERTKKGLPVFIKLCSEEIQEE

Homology

[Close]

BLAST of PI0019060 vs. ExPASy Swiss-Prot
Match: P23950 (mRNA decay activator protein ZFP36L1 OS=Mus musculus OX=10090 GN=Zfp36l1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-06
Identity = 22/56 (39.29%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 78  GSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSETY 134
           GSG    ++Y++++CR +E++G+C++G+KCQFAHG  +LR      + KT+   T+
Sbjct: 106 GSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTF 161

[Close]

BLAST of PI0019060 vs. ExPASy Swiss-Prot
Match: P17431 (mRNA decay activator protein ZFP36L1 OS=Rattus norvegicus OX=10116 GN=Zfp36l1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-06
Identity = 22/56 (39.29%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 78  GSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSETY 134
           GSG    ++Y++++CR +E++G+C++G+KCQFAHG  +LR      + KT+   T+
Sbjct: 106 GSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTF 161

[Close]

BLAST of PI0019060 vs. ExPASy Swiss-Prot
Match: P47974 (mRNA decay activator protein ZFP36L2 OS=Homo sapiens OX=9606 GN=ZFP36L2 PE=1 SV=3)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-06
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 80  GGGG----KNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSETY 134
           GGGG      +Y++++CR +E+SG+C++G KCQFAHG  +LR      + KT+   T+
Sbjct: 143 GGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTF 200

[Close]

BLAST of PI0019060 vs. ExPASy Swiss-Prot
Match: Q07352 (mRNA decay activator protein ZFP36L1 OS=Homo sapiens OX=9606 GN=ZFP36L1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.2e-06
Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 74  PLDSGSGGGGKN--QYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSE 133
           P     GGG  N  +Y++++CR +E++G+C++G+KCQFAHG  +LR      + KT+   
Sbjct: 100 PTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCR 159

[Close]

BLAST of PI0019060 vs. ExPASy Swiss-Prot
Match: Q9XV46 (CCCH-type zinc finger protein moe-3 OS=Caenorhabditis elegans OX=6239 GN=moe-3 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-06
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 87  YRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSETYGSKFRNNHSLTGI 146
           Y++ IC+ W +S +C F   C+FAHG+E+LRP +L  R   K    Y +K  + ++ TG+
Sbjct: 131 YKTVICQAWLESKTCTFAENCRFAHGEEELRPAKLESRQNNK----YKTKLCDKYTTTGL 186

[Close]

BLAST of PI0019060 vs. ExPASy TrEMBL
Match: A0A5D3C9H3 (Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00710 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 4.4e-136
Identity = 250/266 (93.98%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           MNHYASS SGSNSFGSRGAGLSLSPL+AIENLETPPV+SPQIYGTPMKVDEEVIVMDGIL
Sbjct: 59  MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPVKSPQIYGTPMKVDEEVIVMDGIL 118

Query: 61  ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGR 120
           ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGR
Sbjct: 119 ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGR 178

Query: 121 LPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREGLTPTSSTS 180
           LPVRTKTKFSETYGSKFRNNHSL+GI+ATTTTQSNSNLVDTITKTELSKREGLTPTSS+ 
Sbjct: 179 LPVRTKTKFSETYGSKFRNNHSLSGISATTTTQSNSNLVDTITKTELSKREGLTPTSSSL 238

Query: 181 KWYMNTNPTLISTISIIDWSPE-DDGMKDWSPEDDGIKIVVPGTESTKREDVNQHIHEVL 240
           K   NTNPTLISTISIIDWSPE DDG+KDWSPEDDGIKIVVPGTESTKREDVNQHIHEVL
Sbjct: 239 KRQTNTNPTLISTISIIDWSPEDDDGIKDWSPEDDGIKIVVPGTESTKREDVNQHIHEVL 298

Query: 241 YGSTTERTKKGLPVFIKLCSEEIQEE 266
           YGSTTERTKK LPVF +LCSEE+QEE
Sbjct: 299 YGSTTERTKKRLPVFSQLCSEELQEE 324

[Close]

BLAST of PI0019060 vs. ExPASy TrEMBL
Match: A0A0A0K529 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G103290 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 6.4e-127
Identity = 238/265 (89.81%), Postives = 247/265 (93.21%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           MNHYASS SGSNSFGSRGAGLSLSPL+AIENLETPP+RSPQIYGTPMKVDEEVIVMDGIL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 61  ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGR 120
           ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSG+CRFGNKCQFAHGKEDLRPGR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLRPGR 120

Query: 121 LPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREGLTPTSSTS 180
           LPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKR GLTPTSST 
Sbjct: 121 LPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKR-GLTPTSSTL 180

Query: 181 KWYMNTNPTLISTISIIDWSPEDDGMKDWSPEDDGIKIVVPGTESTKREDVNQHIHEVLY 240
           K + N NPTLISTISII          +WSPEDDGIKI VPGTESTKREDVNQHIHEVLY
Sbjct: 181 KGHTNNNPTLISTISII----------NWSPEDDGIKIAVPGTESTKREDVNQHIHEVLY 240

Query: 241 GSTTERTKKGLPVFIKLCSEEIQEE 266
           GSTTERTKK LPVF+++CSEE+QEE
Sbjct: 241 GSTTERTKKRLPVFVQICSEELQEE 254

[Close]

BLAST of PI0019060 vs. ExPASy TrEMBL
Match: A0A6J1DKP7 (uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021811 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 4.4e-83
Identity = 176/273 (64.47%), Postives = 211/273 (77.29%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           MNHYASS S S+SFGSRG G SLSPL+AIENLETP  RSPQIYGTP+KVDEEVIVMDGIL
Sbjct: 104 MNHYASSTSRSSSFGSRGGGSSLSPLSAIENLETPTARSPQIYGTPVKVDEEVIVMDGIL 163

Query: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLR 120
           ISS+ G AKT+RS  +S +GGG   GKN YR+DICR WEDSGSCR+G+KCQFAHGKE+LR
Sbjct: 164 ISSVPGGAKTMRSASESVTGGGSLSGKNLYRTDICRSWEDSGSCRYGHKCQFAHGKEELR 223

Query: 121 PGRLPVRTKTKFSE----TYG-SKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREG 180
           P RLPV+ K K S+    TYG SKF ++H+L        T S+S ++DTI  +E+S+ EG
Sbjct: 224 PARLPVKNKPKVSDSYCTTYGHSKFCDSHAL------AVTTSHSYVIDTINNSEVSRSEG 283

Query: 181 LTPTSSTSKWYMNTNPTLISTISIIDWSPEDDGMKDWSPEDDGIKIVVPGTESTKREDVN 240
                + S  +MNT P+LISTISI+          DWSPEDDGIKIV+P ++STKREDVN
Sbjct: 284 ---GKTMSIRHMNTKPSLISTISIV----------DWSPEDDGIKIVLPNSKSTKREDVN 343

Query: 241 QHIHEVLYGSTTERTKKGLPVFIKLCSEEIQEE 266
           Q+IHEVLYGST ERTKK LPVF +LCSE++Q++
Sbjct: 344 QYIHEVLYGSTNERTKKRLPVFTQLCSEKLQQK 357

[Close]

BLAST of PI0019060 vs. ExPASy TrEMBL
Match: A0A6J1ICU5 (uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472626 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 8.0e-77
Identity = 170/270 (62.96%), Postives = 197/270 (72.96%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           +NH+ASS SGS+SFGSR  G SLSPL+A+ENLET PVRSPQIYGTP+KV EEVIVMD IL
Sbjct: 104 INHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163

Query: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLR 120
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSGSCRFG+KCQFAHGKE+LR
Sbjct: 164 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 223

Query: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREGLT 180
           P  LPV+TK KF E   T+G K RNNHSLTGIAATT     SN +    KTEL++R    
Sbjct: 224 PVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLYATFKTELNRR---- 283

Query: 181 PTSSTSKWYMNTNPTLISTISIIDWSPEDDGMKDWSPEDDGIKIVVPGTESTKREDVNQH 240
             S  S   +NT                     DWSP+DDGI++VVP T+ST R DV+QH
Sbjct: 284 GHSINSIHNLNT---------------------DWSPDDDGIEVVVPETKST-RGDVDQH 343

Query: 241 IHEVLYGSTTERTKKGLPVFIKLCSEEIQE 265
           I EVLYGSTTER KK LPVF++LCS  ++E
Sbjct: 344 ILEVLYGSTTERAKKRLPVFVQLCSSRLEE 343

[Close]

BLAST of PI0019060 vs. ExPASy TrEMBL
Match: A0A6J1IEX1 (uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472616 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 8.0e-77
Identity = 170/270 (62.96%), Postives = 197/270 (72.96%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           +NH+ASS SGS+SFGSR  G SLSPL+A+ENLET PVRSPQIYGTP+KV EEVIVMD IL
Sbjct: 104 INHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163

Query: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLR 120
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSGSCRFG+KCQFAHGKE+LR
Sbjct: 164 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 223

Query: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREGLT 180
           P  LPV+TK KF E   T+G K RNNHSLTGIAATT     SN +    KTEL++R    
Sbjct: 224 PVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLYATFKTELNRR---- 283

Query: 181 PTSSTSKWYMNTNPTLISTISIIDWSPEDDGMKDWSPEDDGIKIVVPGTESTKREDVNQH 240
             S  S   +NT                     DWSP+DDGI++VVP T+ST R DV+QH
Sbjct: 284 GHSINSIHNLNT---------------------DWSPDDDGIEVVVPETKST-RGDVDQH 343

Query: 241 IHEVLYGSTTERTKKGLPVFIKLCSEEIQE 265
           I EVLYGSTTER KK LPVF++LCS  ++E
Sbjct: 344 ILEVLYGSTTERAKKRLPVFVQLCSSRLEE 343

[Close]

BLAST of PI0019060 vs. NCBI nr
Match: TYK07952.1 (tristetraprolin-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 493.8 bits (1270), Expect = 9.2e-136
Identity = 250/266 (93.98%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           MNHYASS SGSNSFGSRGAGLSLSPL+AIENLETPPV+SPQIYGTPMKVDEEVIVMDGIL
Sbjct: 59  MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPVKSPQIYGTPMKVDEEVIVMDGIL 118

Query: 61  ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGR 120
           ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGR
Sbjct: 119 ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGR 178

Query: 121 LPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREGLTPTSSTS 180
           LPVRTKTKFSETYGSKFRNNHSL+GI+ATTTTQSNSNLVDTITKTELSKREGLTPTSS+ 
Sbjct: 179 LPVRTKTKFSETYGSKFRNNHSLSGISATTTTQSNSNLVDTITKTELSKREGLTPTSSSL 238

Query: 181 KWYMNTNPTLISTISIIDWSPE-DDGMKDWSPEDDGIKIVVPGTESTKREDVNQHIHEVL 240
           K   NTNPTLISTISIIDWSPE DDG+KDWSPEDDGIKIVVPGTESTKREDVNQHIHEVL
Sbjct: 239 KRQTNTNPTLISTISIIDWSPEDDDGIKDWSPEDDGIKIVVPGTESTKREDVNQHIHEVL 298

Query: 241 YGSTTERTKKGLPVFIKLCSEEIQEE 266
           YGSTTERTKK LPVF +LCSEE+QEE
Sbjct: 299 YGSTTERTKKRLPVFSQLCSEELQEE 324

[Close]

BLAST of PI0019060 vs. NCBI nr
Match: XP_004148935.1 (uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharacterized protein LOC101215865 [Cucumis sativus] >XP_031744249.1 uncharacterized protein LOC116404958 [Cucumis sativus] >XP_031744250.1 uncharacterized protein LOC116404958 [Cucumis sativus] >KAE8645918.1 hypothetical protein Csa_011889 [Cucumis sativus])

HSP 1 Score: 463.4 bits (1191), Expect = 1.3e-126
Identity = 238/265 (89.81%), Postives = 247/265 (93.21%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           MNHYASS SGSNSFGSRGAGLSLSPL+AIENLETPP+RSPQIYGTPMKVDEEVIVMDGIL
Sbjct: 59  MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 118

Query: 61  ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGR 120
           ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSG+CRFGNKCQFAHGKEDLRPGR
Sbjct: 119 ISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLRPGR 178

Query: 121 LPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREGLTPTSSTS 180
           LPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKR GLTPTSST 
Sbjct: 179 LPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKR-GLTPTSSTL 238

Query: 181 KWYMNTNPTLISTISIIDWSPEDDGMKDWSPEDDGIKIVVPGTESTKREDVNQHIHEVLY 240
           K + N NPTLISTISII          +WSPEDDGIKI VPGTESTKREDVNQHIHEVLY
Sbjct: 239 KGHTNNNPTLISTISII----------NWSPEDDGIKIAVPGTESTKREDVNQHIHEVLY 298

Query: 241 GSTTERTKKGLPVFIKLCSEEIQEE 266
           GSTTERTKK LPVF+++CSEE+QEE
Sbjct: 299 GSTTERTKKRLPVFVQICSEELQEE 312

[Close]

BLAST of PI0019060 vs. NCBI nr
Match: XP_038897010.1 (uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 uncharacterized protein LOC120085195 [Benincasa hispida])

HSP 1 Score: 395.2 bits (1014), Expect = 4.4e-106
Identity = 211/269 (78.44%), Postives = 229/269 (85.13%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           MNHYASS SG NSFGSRGAG  LSPL+AIENLETPPVRSPQIYGTP+KVDEEVIVMDGIL
Sbjct: 59  MNHYASSTSGCNSFGSRGAGSPLSPLSAIENLETPPVRSPQIYGTPVKVDEEVIVMDGIL 118

Query: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLR 120
           ISSI G AKT+RSPLDSGSGGG    KNQYR+DICRYWEDSGSCRFG+KCQFAHGKEDLR
Sbjct: 119 ISSIPGGAKTMRSPLDSGSGGGFSSAKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLR 178

Query: 121 PGRLPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREGL-TPT 180
           P R+PVRTK KFSETYG KFRN+HSLTGIAATT    +SNL+DT  KTELS+RE L T T
Sbjct: 179 PSRIPVRTKPKFSETYGPKFRNSHSLTGIAATT----HSNLIDTFNKTELSRREDLTTTT 238

Query: 181 SSTSKWYMNTNPTLISTISIIDWSPEDDGMKDWSPEDDGIKIVVPGTESTKREDVNQHIH 240
           SSTS  +MNT P+LI TISII          DWSPEDDGIKIVVP TE+TKREDVNQ+IH
Sbjct: 239 SSTSVRHMNTKPSLIPTISII----------DWSPEDDGIKIVVPKTETTKREDVNQYIH 298

Query: 241 EVLYGSTTERTKKGLPVFIKLCSEEIQEE 266
            VLYGSTTERTKK LPVF +LCSE++Q+E
Sbjct: 299 GVLYGSTTERTKKRLPVFTQLCSEKLQQE 313

[Close]

BLAST of PI0019060 vs. NCBI nr
Match: XP_022154583.1 (uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncharacterized protein LOC111021811 [Momordica charantia])

HSP 1 Score: 317.8 bits (813), Expect = 9.0e-83
Identity = 176/273 (64.47%), Postives = 211/273 (77.29%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           MNHYASS S S+SFGSRG G SLSPL+AIENLETP  RSPQIYGTP+KVDEEVIVMDGIL
Sbjct: 104 MNHYASSTSRSSSFGSRGGGSSLSPLSAIENLETPTARSPQIYGTPVKVDEEVIVMDGIL 163

Query: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLR 120
           ISS+ G AKT+RS  +S +GGG   GKN YR+DICR WEDSGSCR+G+KCQFAHGKE+LR
Sbjct: 164 ISSVPGGAKTMRSASESVTGGGSLSGKNLYRTDICRSWEDSGSCRYGHKCQFAHGKEELR 223

Query: 121 PGRLPVRTKTKFSE----TYG-SKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREG 180
           P RLPV+ K K S+    TYG SKF ++H+L        T S+S ++DTI  +E+S+ EG
Sbjct: 224 PARLPVKNKPKVSDSYCTTYGHSKFCDSHAL------AVTTSHSYVIDTINNSEVSRSEG 283

Query: 181 LTPTSSTSKWYMNTNPTLISTISIIDWSPEDDGMKDWSPEDDGIKIVVPGTESTKREDVN 240
                + S  +MNT P+LISTISI+          DWSPEDDGIKIV+P ++STKREDVN
Sbjct: 284 ---GKTMSIRHMNTKPSLISTISIV----------DWSPEDDGIKIVLPNSKSTKREDVN 343

Query: 241 QHIHEVLYGSTTERTKKGLPVFIKLCSEEIQEE 266
           Q+IHEVLYGST ERTKK LPVF +LCSE++Q++
Sbjct: 344 QYIHEVLYGSTNERTKKRLPVFTQLCSEKLQQK 357

[Close]

BLAST of PI0019060 vs. NCBI nr
Match: XP_023536031.1 (uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536040.1 uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.4 bits (768), Expect = 1.5e-77
Identity = 173/270 (64.07%), Postives = 198/270 (73.33%), Query Frame = 0


Query: 1   MNHYASSASGSNSFGSRGAGLSLSPLTAIENLETPPVRSPQIYGTPMKVDEEVIVMDGIL 60
           +NH+ASS SGS+SFGSR  G SLSPL+AIENLET PVRSPQIYGTP+KV EEVIVMD IL
Sbjct: 104 INHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163

Query: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLR 120
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSGSCRFG+KCQFAHGKE+LR
Sbjct: 164 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 223

Query: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKREGLT 180
           P  LP++TK KF E   T+G K RNNHSLTGIAATT     SN +D   KTELS+R    
Sbjct: 224 PVHLPLKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLDITFKTELSRR---- 283

Query: 181 PTSSTSKWYMNTNPTLISTISIIDWSPEDDGMKDWSPEDDGIKIVVPGTESTKREDVNQH 240
             S  S   +NT                     DWSPEDD I++VVP T+ST R DV+QH
Sbjct: 284 GHSINSIHNLNT---------------------DWSPEDDDIEVVVPETKST-RGDVDQH 343

Query: 241 IHEVLYGSTTERTKKGLPVFIKLCSEEIQE 265
           IHEVLYGSTTERTKK L VF++LCS + +E
Sbjct: 344 IHEVLYGSTTERTKKRLLVFVQLCSSQQEE 343

[Close]

BLAST of PI0019060 vs. TAIR 10
Match: AT1G66810.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 49.3 bits (116), Expect = 5.6e-06
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 88  RSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSE--------TYGSKFRN 145
           ++++C  W+++G+C +G+ CQFAHG ++LRP     R KT+            YG +   
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHF 293

[Close]

BLAST of PI0019060 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-05
Identity = 22/65 (33.85%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 88  RSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSE--------TYGSKFRN 145
           ++++C  W+++G+C +G+ CQFAHG ++LRP     R KT+            YG +   
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHF 283

[Close]

BLAST of PI0019060 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-05
Identity = 22/65 (33.85%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 88  RSDICRYWEDSGSCRFGNKCQFAHGKEDLRPGRLPVRTKTKFSE--------TYGSKFRN 145
           ++++C  W+++G+C +G+ CQFAHG ++LRP     R KT+            YG +   
Sbjct: 223 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHF 282

[Close]

BLAST of PI0019060 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 42.0 bits (97), Expect = 8.9e-04
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 0


Query: 77  SGSGGG----GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDL 117
           SGSG G      + +++ IC  WE +G C FG KC FAHG  +L
Sbjct: 247 SGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290

The following BLAST results are available for this feature:

BLAST of PI0019060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23950	2.4e-06	39.29	mRNA decay activator protein ZFP36L1 OS=Mus musculus OX=10090 GN=Zfp36l1 PE=1 SV...	[more]
P17431	2.4e-06	39.29	mRNA decay activator protein ZFP36L1 OS=Rattus norvegicus OX=10116 GN=Zfp36l1 PE...	[more]
P47974	2.4e-06	41.38	mRNA decay activator protein ZFP36L2 OS=Homo sapiens OX=9606 GN=ZFP36L2 PE=1 SV=...	[more]
Q07352	4.2e-06	38.71	mRNA decay activator protein ZFP36L1 OS=Homo sapiens OX=9606 GN=ZFP36L1 PE=1 SV=...	[more]
Q9XV46	7.1e-06	38.33	CCCH-type zinc finger protein moe-3 OS=Caenorhabditis elegans OX=6239 GN=moe-3 P...	[more]

BLAST of PI0019060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9H3	4.4e-136	93.98	Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K529	6.4e-127	89.81	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G103290 P...	[more]
A0A6J1DKP7	4.4e-83	64.47	uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1ICU5	8.0e-77	62.96	uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IEX1	8.0e-77	62.96	uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of PI0019060 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07952.1	9.2e-136	93.98	tristetraprolin-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_004148935.1	1.3e-126	89.81	uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharact...	[more]
XP_038897010.1	4.4e-106	78.44	uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 unchara...	[more]
XP_022154583.1	9.0e-83	64.47	uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncha...	[more]
XP_023536031.1	1.5e-77	64.07	uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of PI0019060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66810.1	5.6e-06	35.38	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	2.1e-05	33.85	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.2	2.1e-05	33.85	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G32360.1	8.9e-04	45.45	Zinc finger (CCCH-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 86..113 e-value: 2.9E-7 score: 40.1
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 87..113 e-value: 1.6E-8 score: 34.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 86..114 score: 16.398626
None	No IPR available	GENE3D	4.10.1000.10		coord: 83..119 e-value: 3.0E-14 score: 54.1
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 8..256
None	No IPR available	PANTHER	PTHR12547:SF142	ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN	coord: 8..256
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 86..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019060.1	PI0019060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding