MS023809 (gene) Bitter gourd (TR) v1

Overview


Name	MS023809
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC1
Location	scaffold207: 690183 .. 703637 (-)
RNA-Seq Expression	MS023809
Synteny	MS023809

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTCTGCTATAGATAAAAGCTCGCATAATATGTCGGACTTGGAATCTGAACAAGTTGCAGGAAAAGAAGGCATTGAATGGATAATGAATCTTCCAGATGTGCCCATGAAGCTCCCACCGCACCTAGAAATGCAGAGGACCCGAGTCGAATGCAAAGCCGATGCTCCCATTCATGTACTCATCTTTTCCCTCTCTCATATTTTGTTTGTTTTGTCATCTCTTCTTTCTCATTCGAATTCTAAGAATGATGTTCGATTTGAATCGAGGAAAATATAAATTTTGTATTTTTTGTTGTGGAGGGTAAATAGAAGCTTGCCCAACTTTTTGTCCTTCAGATTGAGTAAATATCTTTTTTAACACGTTTAGTACAGTTTATTGAGTAAATATCAACCTATTTAATTAAGTTTCATGCTTTTTGGAGAGAAGCAGATTTAATGGTTATGACTTAGAAGCCTATATTATTATTTTCTTTTCCATCCCTGTAATTTACTGGAGTTTTATTTATAGAACTTGTAGTCGTTATGTTTAATTGACTTATTTTAATTTCCTTATCATGGTCCTTGTGAAATTATGTTGGCTTTTGTAGACAGATACCATACAGTATTCTGGAGCATATGCTTCGATGGGTGTTGATAACAGTTTACGACTGGATTATTTTCGCAACAACTTTAAAATTGAAGTGATTGATTTAGGAGAGGATGACATTGAGTTCGACATGATCGGTATTGACCCAGCACTCGCTAATGCATTTCGTAGAATCCTTATAGCTGAGGTAGGTAATCTAGCACAATGAAATAAAACTAAGTTATTTATTCTTTTTGGCTGACTTTTGGTATTTACTTCCTTGTCACCACTTTTTCTGGGCTATCGTGCGATAAATATATTAAAAGGCTATTGAGGCTTAGCCTCAAAGCATAGTCTCGTAGCTTACACTTTCTTTCTTCATTTGAAGCTTATGTCTGTATGGAATAAACATATGCTTGCATGAGAATGTATGAAAGTTTGGAATCTTTGTGTCTTATGTAACGGTTTGAAGAATAATGACGGTTTGTCGTCTTTTCTTCAAAATTTTAAACTTTGCTCAAGCTTATGTGTTCAAAGCTAATAAAATAGGAAAGTTTCTTATCTGAAAAAAAAAAGCTAATTAAAATAGGGATTTTAGTGGTAAGGGCTTGGAATATTTGGAATTCGTCTTGTTAGAAAAGTTGCTAGGTGCAAGCCTACATACCCTGGTTAGGTTATAGAAAAAAAATTGGGGTTGTAATGTTTAGCCTATTATTCCTTTTGCTGTATCTTAAAGAAACAATATGGACAAAAGTTAAGCATGAGGCAATCCCATTAACTTTAATGATGATGATATTGAGAATGGCCTTTAGAATCTTAATTTAAAGAAGTGAGACTTTTTTATTTTAATAAAATAATAATCATTACGACATTGACACCAGTGTTTGAAAAAGCCCTTTCAGGCGCATGCCTAGGTGCTAGGTGCAACTCTAGTGCCTCGCCCCAAAGAGGCGAGGTGACACTATGAAGGTGCGCTTTAAGCGCGTGCCTTCCATTGAAGCCCCGAGGTGCAAATCGTTGCACCTCGGGGACTTCTGTGATAACTAGGGAAAAAAACTAACCCATACCATTTTCTTCTTTTTCTCCACGATTCTTCTCTTCTTTGTGCTTTCATTTCATTTGTTAAATTTCTCTCTGTCTCATCTGGTTAAAGAGGAAGAAAAGTAATCGGAAGAGAGGCATAAGAAAGTGAGGAAGAAAGGTTGGAAGAGGGGAAGAATAATCGTGGAAAGGTAGAAGTAGAACTTAGAGGGAAGAGGAGAAGATAAGTTTGAAGACAGATCTTTAAAGAAGCTTACATTTTCTAGGCCCATTAAAAAAGCTTACATCTTCTAGGTTCACAAAAGAGGCTGCATGGCAATATTTCTCTTTCCAAAGTTACAAAATTAATTTGTTTCATTTATTTAAAAAAACCTGATGTAGTCGGCTTAGTTGTGGTTTATTCTTTTAGGATTAGCTAGTTATATCTTCAGCTTGTTTAAAGTTTAGTAGTTACTGCACATTAACTTGAGTTTATCTTGTATTCCTAAAGCTGGAAGTCTCTATAAATAGGCTTTCCTTTAGTAATGAAAGGCAGATTGCATTATTCCTAAAAACTCCTGTGCAAGATTGCATGAATTGATATCAGAGGACCCAAAATTCTGGGCACTCATTGGCGGGAAAGAAACCAGCAATCATGTGCGATTCTTACTTTGCCAACAAAGAAAGGATCAGCTTTCCGTTCTCTCACCACGATCAACGACCATACGCTTGCAGTTGGTCGAAGGAAACATTAAAGTCATCCAAAAGGATGTGGGTGAGATTAAACAAATCCTGAAAATTATACATGGGCGGTTGGAAACCTTGAATCTGCAACAAAACCCAACAAGAATGGCTCAACAAAATCCAGCAAGATTGGAGCAAGAAGCATGGGTGGATGATCGAAAAGGCAGCTACATTCAAGATAGGCAAATGGCTCCACCAAGAAGGGTCCAAGAAACCAATCTAGGTCCAAGAGTTCATCAAGAACAGCATCATGCCCACCAAGAATTCAACCAGAATGCTTTATCCCAATGGCGGCATGAGATTTTTATGGATTCTTCAAGTGATGCGGATGAACTACCCGAATGGGAAGAAGACAGAAGACGATTTCGTTATGATCATCGACAATACCGAGATGCTAGTGATTACAAAATGAAGATCGGCTTGCCTAGCTTCAATGGCAAAATGGAAGTAGAAAGGTTTCTTGATTGGGTGGAGAACATAGAAAACTTCTTTGACTACATGAGTACTCCCGAGAACAAGACAGTAAAACTTGTAGCTCTCAAATTAAAAGGGGGAGCATCTGTTTGGTGGGATAAATTAGAGACAAACCGAAGGAGATTTGGAAAGAGACCAATCCGCACCTGGGAAAAGATAAAAAAACTCATGCGAGAGATTCTTACCCATCAATGATGAACAGACCCTTTACAACTAATATCAAAATTGCAAACAAGTACTCGATCTATCATGGATTATATGGAAAAGTTTCATCGATTTGGTGCAAGAACAAATCTGGGAGAGAACGGACATTACAAAGTTGCAAGATACATTGGGGGATTGCATTTAGACATTAAGGAAAAACTACAACTCCAACCAATTGGGTATCTTAATGAGGTCATTGCTACAGCAACCACCACTGTTGAAGAACAACAGACAAATAAATTTGAACAACAATATAGCCGACAAACTACTTGGGATGGCCAAAGTGGCAGTAGCTGTAAAAGAAGTACCTCTTTTGACAAGAATAATCCAGCTTCTGTCCAATCCGTTTTGAACAAAAGAAAACAAATAGATACTGAACCTCCTGCAGATACTAAACATGGGGGAGTTCCAGCAACAAAAAGACCCACTAGTACCTACAATCGACCAAATTTAGGTAAGTGTTTCATATGTGGACAGATTGGGCATTTGTCACATGAGTGCCCTCAAAGAAGAGCAGTAGCTATCCTAGACGAAACTGAAGAAATTGATCAAGAGAATCAAGATTCTGAAAATGAGATCACTTATTTAGAACCGGAAGAGAGCAAGCAAGTTTCTTATGCTCTTGAAAGGCTTCTCCTTACACCAAAAACAGAATCTTCTCCACAAAGACATTCTTTATTCAAGACAAGGTGCACCATTAATGGAAAAATATGTAACGTGATTATCGATATTGGAAGCACCGAAAACATTGTGTCTAGCAAACTGGTAACAGCCCTCAACCTCCAACTCATCCCTCATCCTGCAGCTTACACAGTTAGTTGGATCAAGAAAGGAGCTGAAGCTCAAGTATCAAACATTTGTACAATCCCTTTGTCATTTGGGAATAACTATAAGGATCAAATCATTTGTGATATTTTGGAGATGGATGTTTGGCATGTCCTTTTTGGGAAAAATTCAAACTCATTCGGGCAATTCAATTGCTAGTTATTCCAAGAAAATTTTGAGAAGTATTGGAATGAAGAAGAAAGTGGGTAGTTTTGAGAAGGATCCCGTGAAAAAGAATGTTGATAATTTGGAAGACTTTTGTCTCAACAAACTACTGCATCAAAATTTATTGGGATTTAATTCAGTTTGGTCACTTTATCGTTGTTTTGATGAGTTAAAAAAGGCATTTTCGGTTGGAGTATTTTTGAACCACAAAAAGAAGCGAGTTTCTATTTCGAGGATTGTTCACCGCCATCTAACTTCACTGCTTTTAAACTCGAGGATGAGTTTTATCTTTTGGGTCAGGGAAATTGATGTAGTCGGCTTAGTTGTGGTTTATTCTTTTAAAGGATTAGCTATTTATATCTTCAGCTTGTTTAAAGTTTAGTAGTTACTGCACAGTAACTTGAGTTTATCTTGTATTCCTAAAGCTAGAAGTCTCTATAAATAGGCTCTCCTTTAGTAAGGCAGATTGCATTATTCTTAAAAACTCTTGTGCAAGATTGCATCAAAACCTTTCTCCCTTAATTTTAAATTTGAAGTATTTTTTACTTTTCTTAATTATTTAAGTTAATTTTTATATGAATATTATTTAATTTCTTAATATTTTCACATTTTAATAAATGAGTGTTTATTTCCTTTACCTATAAATTTTATAAAAATTGAGTATTTATCATTATGTATATGTACATATATATATTTATGTATTTTTTTAAATATAGTGTGCCTCGTAAAAAAAAGCGCGGGTTTTTTTTTGTGCCTCGCGCTTAAGCCCCAAAAGGCTATTGCGCATGCTCCTCGAGCTTTTAAAAAACACTGATTGACACATGGTTTACCCCTTTTTACCCCCTTAGTACCTTTCCATTTTACATGTCTTGTGTCTTGCCTCTTCTACAGAAAAAGCTTTGGGGACTTTTTGGTGTCTTTTAGAGCATTCCATGTGATTAGGGATGTTAAATAATGAATGGAATATATGTTCTCTCGTTGTTTGCATTTTCTTGTATCGGGTTTCATCCCATGTTAAATATTACATAGTTTACATTGTTGTTATGCTGATTTGGGTTTGATTTGTATTTTCATGGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCATTAATCCAAGATGAAGTGCTTGCCCATAGGTTAGGCCTCATTCCGATTCATGTTGATCCAAGGCTTTTCGAGTACTCAGGTATTTCTGTGTATATCTATGTAAATTTAATGTGCTTATGCATGCTAATGCTGGATACTTCTATATGAATGTTGAGAAATCATTTCTATTTGGTTTACCCTTTCATTATTCAAGGATACTTAACTAATAATTCCTGTTCAAAATTAGATAAAGACACACCAAATGAGAAGAATACCATTGTTTTTAGACTCCATGCTCGCTGTGAACGTGGAAAACCTCGTCTTACAGGTATTTGTCTTGTTTCCTTTGAAGTTCATGCTCTATTCATAAATTTTCTTAATTATAAACTTATTTCAATATTTTTCTTGTTTCACTACTAATGATGAATGTATAATGGGTGATTCAGTGACATCAAAATTATTGACGTGGTTACCAAATGGTAGTGAATTTCCCTTGGTATCAGACAAATCAGTTCCAAACTCAAAACCCAAAACATATACTTCTTTTAGTTGCAGCCAAGACACGCTACCAGAATTTTCCAACAATTCAATTGGTCCAAAGGACAATGATATTATAATTGCTAGACTTGGCCCGGGTCAGGTAACTGAACTCTAAACTTTATCTATTATCTGTGAAATATAGGGAAGAAGGGGTGTGCATGAGTAGATGACTGAAGCTGATGAGTTATGCTTAGAATAACAGGTCTTGAATTTAAAATTGTGACTCATGTGCTTGTAATTTTGTTCCCAAATAGGGAGGCATTTTGGGTTCATTCGTAAAATAAAGTCAGTATATATAAATATGAATTTGGCATATATAATCTATAACCAAAGTTGTATATCACTTCATGTATGTGGTGCTTGTGCTAGCAGGCCAATTATTTATACAGCTGTAGGTACCTTTACTTCCAATTGACATGCATTTGGTAGTTTGAATATTATATATTTCCTTGTACATATTAGTGAGAAGATGTACAAAAAGAGAAGATATCCCAACCAAGTCAAGGGGATTACAAAAAGGACTCCCTATCGGCAATGTTTTTTATTTTATTTTTTATAAGAAACTATTCTTTCATTGAGAAAAATGAAACGGATAACAAGAAGCGCATACAAAAAAACAGTCCAAGAAGAGGACACCCACCAAAGAAAATGACTCCAATCCAAAAGAATGACACCCAATTGATAATTACAAAAGGCCTTAGAGACCGAACCCCACAAAGAAGTCTTAAACCTAACAAAATTCCAAACTGTATCCACCGTCTTTTCCACCCCCTAGAAATTCTATTGTTCCTCTCCAACCAAATACCCCACAAAGTAGCCAAAAAGCCCGCTTCCCACAAGAACCAACCGCCATGGCAAAAAGGAAGGAATAGCAGCAACTCCTCCATCGTCGCCCTAACATCCCTATTAAGGGCAAAAGATACCCCAAAGCAACCAAAAAAACAAAGCCAGAGCTTCTGAGTAAACTGACAAGACCACAACAAATGCTCGAGGTCTTCCGAGACTCCTCTATAAAGCACACACCACTGCGGGCCCAAACACAAGTAAGAACTCCTTTGAATAGGATCCATGGTATTGACTTCCCCAAGTAAGACTTGCCATCCAAAAAACTTAATCTTCTTCGGAATTTTTATCTTCCAAAGAGGTAAACAAAGAGGCCGACGGGGGAGAATCTGGGGAACTCAAAACATGGAAATAGGAATGGCAAGAGAAAACCCTAGAAGGGCTGGGGGACCACACATGCACTTCCTCCCCCCCAAGACGGAAAGAAACCTCCGACAACAAGCCAAGCAAAGCGGAAAACCTCTAAAGACTCACGATCAGTCAAAGAACAACGAAATCCCAAAGAGATGGAGGGTGCAACCCCCTCCCCCAACGGATCCATGATAGCGGCCACTGAATGCATCTTTTTATCAGAAAGATGGTAGTGCCAAGGGAACAAAAGACTAAAAGGTTTATCTCCCATCCAAGTATCCTCCCAGAAGTAGGTATTACGACCCTCCCCTAAAGAAGAGCGAAGGAATTGAGAGAAGGAAGGAAAACACGAAGCAATAGCCTTCTAGGGATTGTTATTGCTCACCTTAGCACCACCTACCGAGACCCACTCAAAAGGATGCGACCATACTTGCTCACAATAATCCTTCGCCACAAGGCACTAGGTTCATGGAAAAAAATGCCACAACCATTTAGCCAAGAGCACCTCATTCCTGAGGCTCAAATTTTCGGTCCCCAAACCCCCCACTTCCAAAGGCTTCGCAACGATTTTCCAACTAACAAGATGAGAACCACTTCCCTCCTCCACCCCTTCCCAGAGAAAATCCCTCGTAATCTTTTTTAAGCTGTCACTAACCGCCACTAGAATCTTGAAAAGGGATAAAAAATAGGTTGGGATTCCCCTAAGAACGGACTGAATCAGCGTAAGTCTCTCACCTTTAGAAAAGAAGGCCTTCTTTCCACAAGGAAAGGCGCTTTTGAAACTTTTCAAGCACCAGCGCCCAGAAATTCGCACTCTTAGGATTATAACCCAAGAGGATGGCAAGCCACCAACTCCACCCCCCCCCCCCGAGTCGCCCAGGCACTCAGCTTACCAGGTTCACTGTTAACACCAAAGATCAAGCTTTTGCCTCTATTAATCTTAAGGCCTGAAACGGATTCAAAAAATCCCAGAAGACAGTTTAGGTTTGAAAACGAGCTGTCCTTACCTGAACAAAAGAAAATGGTATCATCTGCGAACTGAAGATGAGAGAGGCCGACCTTCTCCCGACCCACTTCAAAGGCTTGCAAAGCACTTTTCTCCACCCCAACAAAAACTAACTTAATGAGAACATCCACCACTATAATAAATAAGAACGGGGACAAAGGATCTCCTTGTCTGAGGCCTCTAGAGACAAAAATTTTACCCCTAGGCCTCCCATTAACGAGGATAGAGAAGTTAACTGGTTTGATACAGCTCCAAATCCAAGATTTCCACTTACAACCAAAACCTTTCTTCCACAGAACTTTGTCTAGGAAGTCCCAATCAACATGATCATTCGCCTTTTCAAAATCGATCTTAAAAACCATCTCCTCCTTTTTCCGCTTTCTATAATCCTCAATAGCCTCATTTGCAATCAACACTTGGTCCAAAATTTGCCTCCTAGCAATAAAATTCCCTTGGGACTCCGAAATGGTAGAGGGTAAGACCTTTCTAAGCCTTGCTAGGCTTTTAGCAATAATTTTATTAAGGCTCGTCACTTGTGACAAGACTAATAGGTCTGAATTCTTTCACTCTGTTAGCATTCTCTTTCTTCGGGATAAGACACACATACATCTCATTCATGTACGCATCAAACCATCATTACAGAAGTTAGAGGGTAAAGATTACCAAATAGACGATAACAATCTAATTTGATCCTGAAATTCATTAAGAGCAGAGTCACTTGCCTGAAATTCAGAAGTTAGAGGGTAAACATGGCTTTCTATTCACACCGAAGTCTCCACCAAAGCACCACCATCGAATTATACCACAAGATTTCTTTGTACTTAATGAAATTCTAAGTTTCTTATTTAAAAGAATATTATTTAAGTTTAAAGTACCCTCAAAGGAAAGGGTTATTTGTAATGCTACAATATTGGGTATGTTTCAGTGCCTAATGGGCTATTGTTGCTCAGTAGTTAGCATGTGTAAATTTCTTAACTTTTGCTTCAAATATTTGTAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCGGTGGCCACTGCTTGGTACAAGATGCTTCCTGAGGTGAGGAAACATGTCAGTGATTACTCAAAGATCCATAGATATGTTGAAGCCTAATGAAACTTGTGATTATTAGGTTGTACTTTCGGAGGAGATAGAGGATGAGTTGGCTGAAGAACTCAAAAAGAAATGTCCTGTTGATGTATTTGACATTGAAGACATTGCTAATGGTTAGTTGGCTTCTTACATTTGCTATTAATTATCTTTATACTTGGAACATTATGGTGGTAAAGTTTCAGAGATGGGAAGGATTCCTTAAGAGTAAAGTTTTTGTCATGTATAGAACTAATTTTCCTAATTTAGGGAGTCTTGTTTATATTCTTGATGGTTTTAGTTTTAGCCTTGTAATTTCTCAAATATCAATAGAAAGCCATGTTTCAATTTATTATTATTATTATTTATTTTAAGTATGCATTAATTATCTAAAGGAGAGAATAGAAAAAAAGGTGTTTCAATGTTATGTTAAAGAAAAAAAGTAAGGTTTTTTGTCCTTTCCCCCATATGCTATATCCCGTGCAGTTCTGATGAATATGAGGAATTGTTGGGTTGTTTTTTATTATGAAAAGATGGATTCTGAGTGGTTGCATGATGTTGGCCTCTTTTTGCAGAATTCAAATTGAATCCATTTTTCTATGTACTTCATTATTTACCATGTCTATTTTGTAGGTAAGAAAAGGGCAATTGTAGCACGCCCAAGATCTTGCACACTGTGTAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGTGTGAAGGATCATTTCATTTGTAAGTGAAGGTTTTTTTGTGCATAACTTAGAGGGTAGAGCTAGAAAGGATAAATCTTGATGTTGATGATCGGCACATCTTTGTTCAGTTTGGCAGTGCCTTGATAAATGTTGACATGACATCCTAACAAATAGTAGTTTTCCTCCTCCCATGTTGATATTTCGAAATTTCAGCAAGCATTAGCTTCTTTTACTATTTTGGATTTTTTTTTATTAACAAAAAAACAAACTTTCCATGAATTAGTTAGAAGTTGTGAAGTAGTAGGTCTAAAAGACCAAGTATTACAAATAATAACAAATTCCCTGTGGAGTTACAAAAGCTCAGCCCTGTTTTTGTTAATTAAAAAGGGAGTCGGTTACATCAACATGAGCAAAGCTCAGTGGTAATTGGCATATGTATCTAACCAAGAGGTCATGAGTTCAAACCTGTAGAGACTAAGGTTGTAGAGAATCCAATGTGATGTATTCTGATTATTAAAGTCTATATATATAGACAAATATACAAGGTTGACCTAATCCTATAAGGAGAAGGTAAAGGACAAATTAATATTAATACAAGAATATAAAATATACTAATATCTATACTCTAACAAAACCCTCTACCCTATTTGTTGTAGGGAGTCAGTTACTAAACTCTCGATCTATAGAAATCCAAAAAGTAACTTTATAGCATTAGCCCAAGGTTTCTTGGCTTTATTCTTGAAAATGTGGCCAAACAGCAATTAAACCAAGTCTCCATCCAAAGAGTAGTGAAAGACTTGAGACAATGGGAAATTTGTATGATGGAGCACCAAATCCTCTTGCTAAAGAAACACAAGGAAGAAGAGATGAACCCACAGAGGGATTCATGTCCATTGTGGGGCATCTATTTTGCAAATTTTCTATTATATTGAGAATCATCATGAAGTCTCTGGAGGTGTAAGTTGTTTGGTTTGGGTTGGTTTCTAGCAAAAACTAACATATCAGTTTTAAAATAAGCTACATACATCTGATGTACAAACCGAACTGATCTGACTTGAAAACCAACCAAACTAATCAAAACCAAACGAACTGACCAAGAAGTATAGTCCAAACTGACCAAACCGAGACATTTAGGCAAAAGGATACAGGTCTGATTTCTTAACTAATCCTCCGACCCACCGGTTCCACCCCACAAGGATATTTGAAGATTCAATGACTAGGAGAAGAAAGGATTGATAATCTTTCTCCTCTTAGAAAGTTCCAGAAGGATCTAGCAGCCAACATAAAGAGTCAGAACCCTGTGGAGGATGCAAATCTTGGAGCAAAACAGAGAGATTTGCCCATTCTTCCACCTCTGTCCACCAAACCTCTTCTCAACTGAAGATTCCAAGCTTGCTTTGTCTCAGACCAGCCACTGTTGGCAGAAAAGGACTTGGAATTTGTTACAGTGTAAATGGAGGGGAAACAGGAATTTTGAGTGAGCAAGGAGAGATTCATTTATGAGTTTAAAAGTAGTGTTCTCAATAAGAAATCCGATTTTTCAAATATCTTTCCATGGGCTATAAGTAGCTTTTTCCTATCGGGGAGCCAAGCATTAGCAGTCTGCCCAAACGTGCTTTTGATGATAGTTTTCCACAGAGCCTTATCCTCTTAGAATATCACCACAACCATTTTGCTAGGGCTTTGTTTCTTCTAAATCTCCAATACAAAAGGTCTCCTGAGATTAAAGGGGCTGTCATTTTATTGGTGACTTCCAACTTCATTACTGGCACCTTTACGAAGGAAGTCTCGAATGATTATATCTAACAAGATTCAGACGGAATCTTAAGGATGCAGAAATCACTGAATTAGCGTTGCTCCTTCACAGCCTTTCTTCCTCCCACCCAAACCAAGACAGTGACAGAATCTTTTGGAGGCTGGAACCGTCAGGATCATTCACTACCACATCTCTCATCCATGATTTGCCCTACCACACTACGTCACCAATGAAGCTTCCCTCTACAAATCGATCTGGAAAGAACACTACCTAAAGAAGATCAAATTCTTCCCCTGGGAGGCCAGTTTGTCTGCCTTAAACACCCATGAAAAGCTCCAAAGGAGGCAGCCATCGACTTGCCTTTCTCCACATTGGTGTGTTTCTGCCGTCAACATGGTGAAACACAGGGCACGTTTTTGTTACTTGCAGATTCGCATCCTCACTATGGGACACCCTCCTATCATCTTTTGGTTGGTCAATAGCCTTACCCTCAGATTTACACACCCTATTATCATCTACACTAACAGGTCACCCTTTTGGAAAGGAGGCAAAAATCCTTTGGATGCATTTTATTCGGGCTATGCTTTGGTCGATATTGTTGGAAAGAAATCATAGGCTCTTTCAACGCAAAGAACGATCCAGTAGCAACATTTTTTATTCTATAGTGTATTTGGTTCTATCTTGGTGCAAATGTGCTCCTACCTTTCAACACTATAGTTTTGTCTCTCTATTAACCAATTGGAAAGCCTTTTTGTAGCTCCAATGGTTTTGGACTCTCATCCCCTTTTGTATATCTATCATTTCATTAATCATTACATTAATGAAATTGTATCTTTTCCTAAAAAACAAGATTCATGAAGTTTCTTCCACCTGTTCATTCTGCCATGACTCTCACCAATAAAGATCCTAGATTTTCCGCTCCTCAAGTTAATTAGGCTAATTTCAATCACCCTTTCCCTTCTGTTAAAAGATTTCTCATCCATAAGGCATAATAATCCCTTCCTGATTGTTTGAAGGACTTATTCCTAGAGCCTTTCACATGGCATTGCAAGAACTCCTCAATCCAACAAGCTGAAAATTATTTGGATAAGAAGAATTATCCATCCTCACTCTCACATAACCTATAGCATCCCCTGCCGGTAAAGAATAATTGCCATCCTTTTTGTTTCTTTTATAAGAAACGAATATATCAACACAAGAACAAAAAACAACCTAAGGGCAAGGAATGTTAAGACCTCGTCCCAGAAAACTAGAACATTAAGGCCTTTCCATCTTGAAGGATCAAAGATAAGCTGTATTTACAAGAAAGTTTCTTGTGTTTAAGGCACCATAAATAAGTAGTAAGTTGTACATTTCTGAAAGAATCAAAGTGGAAGAAACTCCTTGAAAAACCCTGTTGTTTCTTTCCTTCCAAATGTTCCAAATGAAGGCCCTTTGAAGCCCACTTCCATAATACTTCAATCCCTCTTATCTTTGATTGAAGTAGGTAAGCAGCCGGGGATATCAAACAAATTAAGCAAAAAACCCTGCCTTTGGCCGTGAACTCAGTGTGAATGAAGATGTGGTCTAGGCTTTCTTCACCTCGTTGACAAAGACTACAAATTGAAGAGCCACAAAATTTCTTTTTCAATCTTTTCTTGTAAGCAAGGCTCCACAGAAAGACTTCTATCTTTTCTTTGGACTTCTAGTGCTTTTTGACTTCTTTCAAAAACACTTATAAATCACTTCCAAACGTGGAGAGTTTAAGTGGGAAATGTTTTTGTCATGGAATAAGTTCTTTTAGCCATGCCAATTGTCAAACATACTCTCGAACAAACATTGCCTAGTTATCTTTGTTAAAAGAACACATTTGACATGGTTTCAAGAAACTCATTTTTCATTGCTTGTTTTGTTTTATATTTTTCATTCCTTTTCCTCTATGCAGTTAAGATTGAATCAACAGGAGCTTTACCTCCTGAGGTGCTGTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCT

mRNA sequence

GTGTCTGCTATAGATAAAAGCTCGCATAATATGTCGGACTTGGAATCTGAACAAGTTGCAGGAAAAGAAGGCATTGAATGGATAATGAATCTTCCAGATGTGCCCATGAAGCTCCCACCGCACCTAGAAATGCAGAGGACCCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATATGCTTCGATGGGTGTTGATAACAGTTTACGACTGGATTATTTTCGCAACAACTTTAAAATTGAAGTGATTGATTTAGGAGAGGATGACATTGAGTTCGACATGATCGGTATTGACCCAGCACTCGCTAATGCATTTCGTAGAATCCTTATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCATTAATCCAAGATGAAGTGCTTGCCCATAGGTTAGGCCTCATTCCGATTCATGTTGATCCAAGGCTTTTCGAGTACTCAGATAAAGACACACCAAATGAGAAGAATACCATTGTTTTTAGACTCCATGCTCGCTGTGAACGTGGAAAACCTCGTCTTACAGTGACATCAAAATTATTGACGTGGTTACCAAATGGTAGTGAATTTCCCTTGGTATCAGACAAATCAGTTCCAAACTCAAAACCCAAAACATATACTTCTTTTAGTTGCAGCCAAGACACGCTACCAGAATTTTCCAACAATTCAATTGGTCCAAAGGACAATGATATTATAATTGCTAGACTTGGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCGGTGGCCACTGCTTGGTACAAGATGCTTCCTGAGGTTGTACTTTCGGAGGAGATAGAGGATGAGTTGGCTGAAGAACTCAAAAAGAAATGTCCTGTTGATGTATTTGACATTGAAGACATTGCTAATGGTAAGAAAAGGGCAATTGTAGCACGCCCAAGATCTTGCACACTGTGTAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGTGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCTGAGGTGCTGTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCT

Coding sequence (CDS)

GTGTCTGCTATAGATAAAAGCTCGCATAATATGTCGGACTTGGAATCTGAACAAGTTGCAGGAAAAGAAGGCATTGAATGGATAATGAATCTTCCAGATGTGCCCATGAAGCTCCCACCGCACCTAGAAATGCAGAGGACCCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATATGCTTCGATGGGTGTTGATAACAGTTTACGACTGGATTATTTTCGCAACAACTTTAAAATTGAAGTGATTGATTTAGGAGAGGATGACATTGAGTTCGACATGATCGGTATTGACCCAGCACTCGCTAATGCATTTCGTAGAATCCTTATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCATTAATCCAAGATGAAGTGCTTGCCCATAGGTTAGGCCTCATTCCGATTCATGTTGATCCAAGGCTTTTCGAGTACTCAGATAAAGACACACCAAATGAGAAGAATACCATTGTTTTTAGACTCCATGCTCGCTGTGAACGTGGAAAACCTCGTCTTACAGTGACATCAAAATTATTGACGTGGTTACCAAATGGTAGTGAATTTCCCTTGGTATCAGACAAATCAGTTCCAAACTCAAAACCCAAAACATATACTTCTTTTAGTTGCAGCCAAGACACGCTACCAGAATTTTCCAACAATTCAATTGGTCCAAAGGACAATGATATTATAATTGCTAGACTTGGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCGGTGGCCACTGCTTGGTACAAGATGCTTCCTGAGGTTGTACTTTCGGAGGAGATAGAGGATGAGTTGGCTGAAGAACTCAAAAAGAAATGTCCTGTTGATGTATTTGACATTGAAGACATTGCTAATGGTAAGAAAAGGGCAATTGTAGCACGCCCAAGATCTTGCACACTGTGTAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGTGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCTGAGGTGCTGTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCT

Protein sequence

VSAIDKSSHNMSDLESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAELS

Homology

[Close]

BLAST of MS023809 vs. NCBI nr
Match: XP_022158557.1 (DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica charantia] >XP_022158558.1 DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica charantia] >XP_022158559.1 DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica charantia])

HSP 1 Score: 763.5 bits (1970), Expect = 9.1e-217
Identity = 379/380 (99.74%), Postives = 379/380 (99.74%), Query Frame = 0


Query: 11  MSDLESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYAS 70
           MSD ESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYAS
Sbjct: 1   MSDSESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYAS 60

Query: 71  MGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL 130
           MGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL
Sbjct: 61  MGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL 120

Query: 131 VANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV 190
           VANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV
Sbjct: 121 VANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV 180

Query: 191 TSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARL 250
           TSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARL
Sbjct: 181 TSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARL 240

Query: 251 GPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVF 310
           GPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVF
Sbjct: 241 GPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVF 300

Query: 311 DIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL 370
           DIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL
Sbjct: 301 DIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL 360

Query: 371 FTEAVKILEDKCERLIAELS 391
           FTEAVKILEDKCERLIAELS
Sbjct: 361 FTEAVKILEDKCERLIAELS 380

[Close]

BLAST of MS023809 vs. NCBI nr
Match: XP_022158862.1 (LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1-like [Momordica charantia])

HSP 1 Score: 723.4 bits (1866), Expect = 1.0e-204
Identity = 357/390 (91.54%), Postives = 370/390 (94.87%), Query Frame = 0


Query: 1   VSAIDKSSHNMSDLESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTD 60
           +SA DK S ++   + EQ  GKEGIEWIMNLPDVPMKLPPHLE+ RTRVECKADAPIHTD
Sbjct: 1   MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVECKADAPIHTD 60

Query: 61  TIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAE 120
           TIQYSGAYASMGVDNSL+LDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRR LIAE
Sbjct: 61  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 120

Query: 121 VPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHAR 180
           VPTMAIEKVLVANNTS+IQDEVLAHRLGL+PIHVDPRLFEYSD+DTPNEKNTIVFRLHAR
Sbjct: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR 180

Query: 181 CERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGP 240
           CERGKPRLTVTSK LTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQD LPEFS N IGP
Sbjct: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP 240

Query: 241 KDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEE 300
           KD+DIIIARL PGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEE
Sbjct: 241 KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300

Query: 301 LKKKCPVDVFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIE 360
           LK KCPVDVFDIEDIANGKKRA V RPRSCTLCRECIRGEAWEKRVSLRRVK+HFIFKIE
Sbjct: 301 LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360

Query: 361 STGALPPEVLFTEAVKILEDKCERLIAELS 391
           STGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 390

[Close]

BLAST of MS023809 vs. NCBI nr
Match: XP_038903474.1 (DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903475.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903476.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida])

HSP 1 Score: 719.5 bits (1856), Expect = 1.5e-203
Identity = 359/391 (91.82%), Postives = 373/391 (95.40%), Query Frame = 0


Query: 1   VSAIDKSSHNMSDLESEQV-AGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHT 60
           +S  DKS HNMSD ESEQ    KEGIEWIMNLPDVPMKLPPHLE+QRTRVECKADAPIHT
Sbjct: 1   MSGKDKSLHNMSDSESEQEGVAKEGIEWIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA+ASMGVDNSLRLDYFRNNFKIEVIDL EDDIEFDMIGIDPALANAFRRILIA
Sbjct: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTS++QDEVLAHRLGL+PIHVDPRLFEYSDKDTPNEKNTIVFRLHA
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLVPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180

Query: 181 RCERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIG 240
            CERGK RLTVTSK LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQDTLPEFSNN IG
Sbjct: 181 CCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240

Query: 241 PKDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAE 300
           PKD+DII+ARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEI+DELAE
Sbjct: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIKDELAE 300

Query: 301 ELKKKCPVDVFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360
           ELKKKCPV+VFDIEDIA GKKRA VARPR+CTLCRECIRG+ WEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKKKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDVWEKRVALRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 390

[Close]

BLAST of MS023809 vs. NCBI nr
Match: KAG7028290.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 711.8 bits (1836), Expect = 3.2e-201
Identity = 349/390 (89.49%), Postives = 368/390 (94.36%), Query Frame = 0


Query: 1   VSAIDKSSHNMSDLESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTD 60
           +S   K+ HNMS+ +SEQ  GKEGIEWIMNLPDVPMKLPPH+E+QRTRVECKADAPIHTD
Sbjct: 1   MSGKGKNLHNMSESDSEQDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTD 60

Query: 61  TIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAE 120
           TIQYSGAYAS+G+DNSLRLD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRRILIAE
Sbjct: 61  TIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAE 120

Query: 121 VPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHAR 180
           VPTMAIEKVLVANNTS++QDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH R
Sbjct: 121 VPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVR 180

Query: 181 CERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGP 240
           CERGKPRLT TSK LTWLPNGSEFPLVSDKSV N+KPKTYTSFSCSQDTLPEF+NN IGP
Sbjct: 181 CERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIGP 240

Query: 241 KDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEE 300
           KD DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL E+IEDELAEE
Sbjct: 241 KDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAEE 300

Query: 301 LKKKCPVDVFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIE 360
           LK KCPV+VFDIEDIANGKKRA VARPR+CTLCRECIRGEAWEKRVSLRRVKDHFIFKIE
Sbjct: 301 LKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIE 360

Query: 361 STGALPPEVLFTEAVKILEDKCERLIAELS 391
           STGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 STGALPPEVLFTEAVKILEDKCERLIAELS 390

[Close]

BLAST of MS023809 vs. NCBI nr
Match: KAG6596753.1 (DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 710.3 bits (1832), Expect = 9.2e-201
Identity = 350/391 (89.51%), Postives = 369/391 (94.37%), Query Frame = 0


Query: 1   VSAIDKSSHNMSDLESEQV-AGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHT 60
           +S  DK+ HNMS+ +SEQ   GKEGIEWIMNLPDVPMKLPPH+E+QRTRVECKADAPIHT
Sbjct: 282 MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 341

Query: 61  DTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGAYAS+G+DNSLRLD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 342 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 401

Query: 121 EVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTS++QDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 402 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 461

Query: 181 RCERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIG 240
           RCERGKPRLT TSK LTWLPNGSEFPLVSDKSV N+KPKTYTSFSCSQDTLPEF+NN IG
Sbjct: 462 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 521

Query: 241 PKDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAE 300
           PKD DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL E+IEDELAE
Sbjct: 522 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 581

Query: 301 ELKKKCPVDVFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360
           ELK KCPV+VFDIEDIANGKKRA VARPR+CTLCRECIRGEAWEKRVSLRRVKDHFIFKI
Sbjct: 582 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 641

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 642 ESTGALPPEVLFTEAVKILEDKCERLIAELS 672

[Close]

BLAST of MS023809 vs. ExPASy Swiss-Prot
Match: Q32L22 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.5e-78
Identity = 168/359 (46.80%), Postives = 225/359 (62.67%), Query Frame = 0


Query: 42  LEMQRTRVECKADAPIHTDTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFD 101
           +E  RTRV        +  T  + G Y+  G D++   D F  NF+++V+ + E+ +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 102 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEY 161
           M+GID A+ANAFRRIL+AEVPTMA+EKVLV NNTS++QDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 162 SDK--DTPNEKNTIVFRLHARCERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPN----- 221
            ++  +   E +T+ FRL  RC R               P+ ++     D S PN     
Sbjct: 127 RNQGDEGGTEIDTLQFRLQVRCTRN--------------PHAAK-----DSSDPNELYVN 186

Query: 222 ----SKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHAVKGMGKTH 281
               ++  T+       D  PE    +I P  +DI+IA+L PGQEI+L  H VKG+GK H
Sbjct: 187 HRVYTRHMTWVPLGNQADLFPE---GAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 246

Query: 282 AKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIEDIANGKKRAIVARPRSC 341
           AK+SPVATA Y++LP++ L E +E E AEEL +     V ++++I  GKK A VA PR  
Sbjct: 247 AKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLD 306

Query: 342 TLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAEL 390
           T  RE  R E  +K V L RV+DHFIF +ESTG LPP+VL +EA+K+L  KC+R + EL
Sbjct: 307 TFSREVFRNEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340

[Close]

BLAST of MS023809 vs. ExPASy Swiss-Prot
Match: O15160 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.3e-77
Identity = 165/363 (45.45%), Postives = 223/363 (61.43%), Query Frame = 0


Query: 42  LEMQRTRVECKADAPIHTDTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFD 101
           +E  R+RV        +  T  + G Y+  G D++   D F  NF+++V+ + E+ +EFD
Sbjct: 7   VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 102 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEY 161
           M+GID A+ANAFRRIL+AEVPTMA+EKVLV NNTS++QDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 162 SDK--DTPNEKNTIVFRLHARCERG---------KPRLTVTSKL----LTWLPNGSEFPL 221
            ++  +   E +T+ FRL  RC R             L V  K+    +TW+P G++  L
Sbjct: 127 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL 186

Query: 222 VSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHAVKGM 281
                                     F   +I P  +DI+IA+L PGQEI+L  H VKG+
Sbjct: 187 --------------------------FPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246

Query: 282 GKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIEDIANGKKRAIVAR 341
           GK HAK+SPVATA Y++LP++ L E +E E AEEL +     V +++++  GKK A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVAN 306

Query: 342 PRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLI 390
           PR  T  RE  R E  +K V L RV+DH+IF +ESTG LPP+VL +EA+K+L  KC R +
Sbjct: 307 PRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFL 340

[Close]

BLAST of MS023809 vs. ExPASy Swiss-Prot
Match: P52432 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3)

HSP 1 Score: 288.1 bits (736), Expect = 1.5e-76
Identity = 168/359 (46.80%), Postives = 221/359 (61.56%), Query Frame = 0


Query: 42  LEMQRTRVECKADAPIHTDTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFD 101
           +E  RTRV        +  T  + G YA  G D++   + F  NF+++V+ + ED +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 66

Query: 102 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEY 161
           M+GID A+ANAFRRIL+AEVPTMA+EKVLV NNTS++QDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 126

Query: 162 SD--KDTPNEKNTIVFRLHARCERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPN----- 221
            +  ++   E +T+ FRL  RC R               PN ++     D S PN     
Sbjct: 127 RNQGEEEGTEIDTLQFRLQVRCTRN--------------PNAAK-----DSSDPNELYVN 186

Query: 222 ----SKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHAVKGMGKTH 281
               ++  T+       D  PE    +I P  +DI+IA+L PGQEI+L  H VKG+GK H
Sbjct: 187 HKVYTRHMTWVPLGNQADVFPE---GTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDH 246

Query: 282 AKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIEDIANGKKRAIVARPRSC 341
           AK+SPVATA Y++LP + L E +E E AEEL +     V ++E++  GKK A VA  R  
Sbjct: 247 AKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLD 306

Query: 342 TLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAEL 390
           T  RE  R E  +K V L RV+DH+IF +ESTG LPP+VL +EA+KIL  KC R + EL
Sbjct: 307 TFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340

[Close]

BLAST of MS023809 vs. ExPASy Swiss-Prot
Match: Q54SN4 (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 4.4e-73
Identity = 150/352 (42.61%), Postives = 214/352 (60.80%), Query Frame = 0


Query: 40  PHLEMQRTRVECKADAPIHTDTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIE 99
           P+LE +RT+V        +     YSGAY S+G DNS  L+ F+ NFKI ++    +++ 
Sbjct: 13  PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72

Query: 100 FDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLF 159
           F+MIGID  +ANA RRI+I+E+PTMAIEKV + NNTS++QDEVLAHRLG+IPI VDPR F
Sbjct: 73  FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132

Query: 160 EYSDKDTPNE----KNTIVFRLHARCER----GK-PRLTVTSKLLTWLPNGSEFPLVSDK 219
            +     PN+    ++T++F+L  +CE+    GK    T  SK L W+P   +     ++
Sbjct: 133 NFK---LPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ-----EE 192

Query: 220 SVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHAVKGMGKTH 279
             PN + +                     P ++DI I +L PGQ I+++ +  K +G+ H
Sbjct: 193 MFPNEEDRP-------------------RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREH 252

Query: 280 AKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIEDIANGKKRAIVARPRSC 339
            KWSPV TA Y++ P + + + I+ + A +L +KCP  VFDIED      + + ARP  C
Sbjct: 253 IKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIED----SGQVVAARPLDC 312

Query: 340 TLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKC 383
           T+CRECIR   +E+ V + RV+DHFIF IESTGAL    +F EA+KI  +KC
Sbjct: 313 TMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKC 333

[Close]

BLAST of MS023809 vs. ExPASy Swiss-Prot
Match: O94616 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc40 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.9e-64
Identity = 137/360 (38.06%), Postives = 210/360 (58.33%), Query Frame = 0


Query: 42  LEMQRTRVECKADAPIHTDTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFD 101
           ++  RT +   +D      ++ + G Y     DN   LD F+ N K+ +  L ++ + F+
Sbjct: 4   VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 63

Query: 102 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEY 161
           + GID ++ANAFRRILIAE+PT+A E V + NNTS+IQDEVL+HR+GL+PI  DP +F++
Sbjct: 64  ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 123

Query: 162 SDKDTPNEK------NTIVFRLHARCERGK---------PRLTVTSKL----LTWLPNGS 221
                P ++      +T+VF L+ +CE  K          RL V S++    L W P G 
Sbjct: 124 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGR 183

Query: 222 EFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHA 281
           +                             F++N I   + DI++A+L PGQEI+LEAHA
Sbjct: 184 Q--------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHA 243

Query: 282 VKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIEDIANGKKRA 341
           + G+G+ HAK+SPVATA Y++LP + +   IE E A + +K  P  V ++E+  +GKK+A
Sbjct: 244 ILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQA 303

Query: 342 IVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKC 383
            VA  R  T+ REC+R   +  +V L RV+DH++F +ESTG + P+VLF +++ +L+ KC
Sbjct: 304 RVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKC 335

[Close]

BLAST of MS023809 vs. ExPASy TrEMBL
Match: A0A6J1DXI7 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025015 PE=3 SV=1)

HSP 1 Score: 763.5 bits (1970), Expect = 4.4e-217
Identity = 379/380 (99.74%), Postives = 379/380 (99.74%), Query Frame = 0


Query: 11  MSDLESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYAS 70
           MSD ESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYAS
Sbjct: 1   MSDSESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYAS 60

Query: 71  MGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL 130
           MGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL
Sbjct: 61  MGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL 120

Query: 131 VANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV 190
           VANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV
Sbjct: 121 VANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV 180

Query: 191 TSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARL 250
           TSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARL
Sbjct: 181 TSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARL 240

Query: 251 GPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVF 310
           GPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVF
Sbjct: 241 GPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVF 300

Query: 311 DIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL 370
           DIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL
Sbjct: 301 DIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL 360

Query: 371 FTEAVKILEDKCERLIAELS 391
           FTEAVKILEDKCERLIAELS
Sbjct: 361 FTEAVKILEDKCERLIAELS 380

[Close]

BLAST of MS023809 vs. ExPASy TrEMBL
Match: A0A6J1DY99 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025323 PE=3 SV=1)

HSP 1 Score: 723.4 bits (1866), Expect = 5.1e-205
Identity = 357/390 (91.54%), Postives = 370/390 (94.87%), Query Frame = 0


Query: 1   VSAIDKSSHNMSDLESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTD 60
           +SA DK S ++   + EQ  GKEGIEWIMNLPDVPMKLPPHLE+ RTRVECKADAPIHTD
Sbjct: 1   MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVECKADAPIHTD 60

Query: 61  TIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAE 120
           TIQYSGAYASMGVDNSL+LDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRR LIAE
Sbjct: 61  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 120

Query: 121 VPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHAR 180
           VPTMAIEKVLVANNTS+IQDEVLAHRLGL+PIHVDPRLFEYSD+DTPNEKNTIVFRLHAR
Sbjct: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR 180

Query: 181 CERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGP 240
           CERGKPRLTVTSK LTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQD LPEFS N IGP
Sbjct: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP 240

Query: 241 KDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEE 300
           KD+DIIIARL PGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEE
Sbjct: 241 KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300

Query: 301 LKKKCPVDVFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIE 360
           LK KCPVDVFDIEDIANGKKRA V RPRSCTLCRECIRGEAWEKRVSLRRVK+HFIFKIE
Sbjct: 301 LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360

Query: 361 STGALPPEVLFTEAVKILEDKCERLIAELS 391
           STGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 390

[Close]

BLAST of MS023809 vs. ExPASy TrEMBL
Match: A0A6J1FDA3 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=3662 GN=LOC111443051 PE=3 SV=1)

HSP 1 Score: 710.3 bits (1832), Expect = 4.4e-201
Identity = 350/391 (89.51%), Postives = 369/391 (94.37%), Query Frame = 0


Query: 1   VSAIDKSSHNMSDLESEQV-AGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHT 60
           +S  DK+ HNMS+ +SEQ   GKEGIEWIMNLPDVPMKLPPH+E+QRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGAYAS+G+DNSLRLD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTS++QDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIG 240
           RCERGKPRLT TSK LTWLPNGSEFPLVSDKSV N+KPKTYTSFSCSQDTLPEF+NN IG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAE 300
           PKD DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL E+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 301 ELKKKCPVDVFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360
           ELK KCPV+VFDIEDIANGKKRA VARPR+CTLCRECIRGEAWEKRVSLRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of MS023809 vs. ExPASy TrEMBL
Match: A0A6J1L269 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661 GN=LOC111498423 PE=3 SV=1)

HSP 1 Score: 709.1 bits (1829), Expect = 9.9e-201
Identity = 350/391 (89.51%), Postives = 369/391 (94.37%), Query Frame = 0


Query: 1   VSAIDKSSHNMSDLESEQV-AGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHT 60
           +S  DK+ H+MS+ +SEQ   GKEGIEWIMNLPDVPMKLPPH+E+QRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGAYAS+G+DNSLRLD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTS++QDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIG 240
           RCERGKPRLT TS+ LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQDTLPEF+NN IG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAE 300
           PKD DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVDVFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360
           ELK KCPV+VFDIEDIANGKKRA VARPR+CTLCRECIRGEAWEKRVSLRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of MS023809 vs. ExPASy TrEMBL
Match: A0A0A0L637 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 GN=Csa_3G047880 PE=3 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 5.6e-196
Identity = 348/392 (88.78%), Postives = 367/392 (93.62%), Query Frame = 0


Query: 1   VSAIDKSSHNMSDLESEQV-AGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHT 60
           +S  DK+ HNMS+ ESEQ    KEGIEWIMNLPDVPMKLPPH+E+QRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAYASMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA+ASMG DNSLRLD FRNNFKIEVIDL EDDIEFDMIGIDPALANAFRRILI+
Sbjct: 61  DTIQYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIS 120

Query: 121 EVPTMAIEKVLVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVL ANNTS++QDEVLAHRLGL+PI VDPRLF+YSDKD PNE NTIVFRLHA
Sbjct: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180

Query: 181 RCERGKPRLTVTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTL-PEFSNNSI 240
            CERGKPRLTVTSK LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQ+TL  EFSNN I
Sbjct: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240

Query: 241 GPKDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELA 300
           GPKD+DII+ARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELA 300

Query: 301 EELKKKCPVDVFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFK 360
           EEL+KKCPV+VFDIEDIA GKKRA VARPR CTLCRECIRG+AWEKRV+LRRVKDHFIFK
Sbjct: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           IESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of MS023809 vs. TAIR 10
Match: AT1G60620.1 (RNA polymerase I subunit 43 )

HSP 1 Score: 498.8 bits (1283), Expect = 3.9e-141
Identity = 251/365 (68.77%), Postives = 293/365 (80.27%), Query Frame = 0


Query: 28  IMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYASMGVDNSLRLDYFRNNFK 87
           I +LPDVP  LPPHLE+QRTRV CK D+ IH   I +SGAY+SMGVDNS+RL+ F  +FK
Sbjct: 23  IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82

Query: 88  IEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHRL 147
           ++VI L E D+ FDMIG+   +ANAFRRIL+AE+P+MAIEKV VANNTS+IQDEVLAHRL
Sbjct: 83  VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142

Query: 148 GLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGKPRLTVTSKLLTWLPNGSEFPL 207
           GLIPI  DPRLFEY S+ D PNEKNTIVF+LH +C +G PR  V +  L WLPNGSE  L
Sbjct: 143 GLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE--L 202

Query: 208 VSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHAVKGM 267
           + +     + PKTYTSF+ SQD+ PEF+ N I P   DI+IA+LGPGQEIELEAHAVKG+
Sbjct: 203 IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGI 262

Query: 268 GKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIEDIANGKKRAIVAR 327
           GKTHAKWSPVATAWY+MLPEVVL +E E + AEEL K CP  VFDIED+  G+KRA VAR
Sbjct: 263 GKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVAR 322

Query: 328 PRSCTLCRECIR-GEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERL 387
           PR C+LCRECIR G  WE +V LRRVK+HFIF IESTG+ PPEVLF EAVKILEDKCER+
Sbjct: 323 PRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERV 382

Query: 388 IAELS 391
           I+ELS
Sbjct: 383 ISELS 385

[Close]

BLAST of MS023809 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 467.2 bits (1201), Expect = 1.3e-131
Identity = 238/360 (66.11%), Postives = 282/360 (78.33%), Query Frame = 0


Query: 28  IMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAY-ASMGVDNSLRLDYFRNNF 87
           I +LPDVP  LPPHL+ Q+TRV  K +AP HT +  YSG Y +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 88  KIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHR 147
           K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 148 LGLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGKPRLTVTSKLLTWLPNGSEFP 207
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LH +C + +PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 208 LVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHAVKG 267
           L+ +     SKPKTYTSFSCSQD+LPEF+NN I P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 268 MGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIEDIANGKKRAIVA 327
           +GKTHAKWSPV TAWY+M PEVVL  E+EDELAE L   CP +VFDIED+  GKKRA VA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 328 RPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERL 386
           +PR CTLC+EC+R +     V L  VK+HFIF IESTG+LPPEVLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of MS023809 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 467.2 bits (1201), Expect = 1.3e-131
Identity = 238/360 (66.11%), Postives = 282/360 (78.33%), Query Frame = 0


Query: 28  IMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAY-ASMGVDNSLRLDYFRNNF 87
           I +LPDVP  LPPHL+ Q+TRV  K +AP HT +  YSG Y +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 88  KIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHR 147
           K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 148 LGLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGKPRLTVTSKLLTWLPNGSEFP 207
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LH +C + +PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 208 LVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHAVKG 267
           L+ +     SKPKTYTSFSCSQD+LPEF+NN I P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 268 MGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIEDIANGKKRAIVA 327
           +GKTHAKWSPV TAWY+M PEVVL  E+EDELAE L   CP +VFDIED+  GKKRA VA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 328 RPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERL 386
           +PR CTLC+EC+R +     V L  VK+HFIF IESTG+LPPEVLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of MS023809 vs. TAIR 10
Match: AT1G60850.3 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 338.6 bits (867), Expect = 6.8e-93
Identity = 173/262 (66.03%), Postives = 207/262 (79.01%), Query Frame = 0


Query: 28  IMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAY-ASMGVDNSLRLDYFRNNF 87
           I +LPDVP  LPPHL+ Q+TRV  K +AP HT +  YSG Y +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 88  KIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHR 147
           K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 148 LGLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGKPRLTVTSKLLTWLPNGSEFP 207
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LH +C + +PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 208 LVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELEAHAVKG 267
           L+ +     SKPKTYTSFSCSQD+LPEF+NN I P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 268 MGKTHAKWSPVATAWYKMLPEV 288
           +GKTHAKWSPV TAWY+M PEV
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEV 274

[Close]

BLAST of MS023809 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-33
Identity = 101/311 (32.48%), Postives = 164/311 (52.73%), Query Frame = 0


Query: 87  KIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSLIQDEVLAHR 146
           KI++ +L +D  +F++   D ++ANA RR++I+EVPT+AI+ V +  N+S++ DE +AHR
Sbjct: 11  KIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70

Query: 147 LGLIPIHVD-------PRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTVTSKLLTWLP 206
           LGLIP+  +        R  +  D D   E  ++ FRL ++C   +  L VTS+ L    
Sbjct: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQ-TLDVTSRDLY--- 130

Query: 207 NGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPGQEIELE 266
                      + P   P  +T  S   D+           +   III +L  GQE++L 
Sbjct: 131 ----------SADPTVTPVDFTIDSSVSDS----------SEHKGIIIVKLRRGQELKLR 190

Query: 267 AHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELK----KKCPVDVFDIEDI 326
           A A KG+GK HAKWSP AT  +   P+++++E++ D L++E K    +  P  VF ++ +
Sbjct: 191 AIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPV 250

Query: 327 ANGKKRAIVARPRSCTLCRECI-RGEAWEK--RVSLRRVKDHFIFKIESTGALPPEVLFT 384
               ++ +V  P + T   E I + EA  K   + +    D FIF +ESTGA+    L  
Sbjct: 251 T---RQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVL 294

The following BLAST results are available for this feature:

BLAST of MS023809 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158557.1	9.1e-217	99.74	DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica ...	[more]
XP_022158862.1	1.0e-204	91.54	LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1-like [...	[more]
XP_038903474.1	1.5e-203	91.82	DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispi...	[more]
KAG7028290.1	3.2e-201	89.49	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita argyrosperma sub...	[more]
KAG6596753.1	9.2e-201	89.51	DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyros...	[more]

BLAST of MS023809 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32L22	3.5e-78	46.80	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=PO...	[more]
O15160	1.3e-77	45.45	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=...	[more]
P52432	1.5e-76	46.80	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN...	[more]
Q54SN4	4.4e-73	42.61	DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum...	[more]
O94616	2.9e-64	38.06	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pomb...	[more]

BLAST of MS023809 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXI7	4.4e-217	99.74	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]
A0A6J1DY99	5.1e-205	91.54	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]
A0A6J1FDA3	4.4e-201	89.51	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1L269	9.9e-201	89.51	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661...	[more]
A0A0A0L637	5.6e-196	88.78	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 ...	[more]

BLAST of MS023809 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60620.1	3.9e-141	68.77	RNA polymerase I subunit 43	[more]
AT1G60850.2	1.3e-131	66.11	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	1.3e-131	66.11	DNA-directed RNA polymerase family protein	[more]
AT1G60850.3	6.8e-93	66.03	DNA-directed RNA polymerase family protein	[more]
AT2G15430.1	2.1e-33	32.48	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 97..388 e-value: 4.1E-107 score: 371.8
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 99..382 e-value: 1.7E-26 score: 92.8
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 123..271 e-value: 4.1E-105 score: 353.1
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 122..275
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 130..274 e-value: 2.7E-23 score: 82.5
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 88..381 e-value: 4.1E-105 score: 353.1
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 84..389
None	No IPR available	PANTHER	PTHR11800:SF14	BNAA01G22480D PROTEIN	coord: 23..390
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 23..390
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 111..151
IPR033901	DNA-directed RNA polymerases I and III subunit AC40	CDD	cd07032	RNAP_I_II_AC40	coord: 86..388 e-value: 2.73239E-143 score: 406.98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023809.1	MS023809.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001056	RNA polymerase III activity