MS022995 (gene) Bitter gourd (TR) v1

Overview


Name	MS022995
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold357: 426429 .. 426653 (+)
RNA-Seq Expression	MS022995
Synteny	MS022995

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATCAAAGCCATTAAAATGCTTCATAGAATCTCTCAATGGAAACACGAAAAGATGGAGAAGGGCTCACATTTGGTTAATTGGAGAAAGGTTCCAATTCCTATCTTAGGATTAAACACCAGTAACCTGAAACAAAATAACCGCTCTCTACTTGGGAAATGGATTTGGAGATACATCATGAAAAAGGATGCTCTTTGGAGAAGAGTAATTGTTGCAAAATATGGC

mRNA sequence

GTTATCAAAGCCATTAAAATGCTTCATAGAATCTCTCAATGGAAACACGAAAAGATGGAGAAGGGCTCACATTTGGTTAATTGGAGAAAGGTTCCAATTCCTATCTTAGGATTAAACACCAGTAACCTGAAACAAAATAACCGCTCTCTACTTGGGAAATGGATTTGGAGATACATCATGAAAAAGGATGCTCTTTGGAGAAGAGTAATTGTTGCAAAATATGGC

Coding sequence (CDS)

GTTATCAAAGCCATTAAAATGCTTCATAGAATCTCTCAATGGAAACACGAAAAGATGGAGAAGGGCTCACATTTGGTTAATTGGAGAAAGGTTCCAATTCCTATCTTAGGATTAAACACCAGTAACCTGAAACAAAATAACCGCTCTCTACTTGGGAAATGGATTTGGAGATACATCATGAAAAAGGATGCTCTTTGGAGAAGAGTAATTGTTGCAAAATATGGC

Protein sequence

VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

Homology

[Close]

BLAST of MS022995 vs. NCBI nr
Match: KAG5611947.1 (hypothetical protein H5410_023228 [Solanum commersonii])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1   VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIP--ILGLNTSNLKQNNRSLLGKWIWRY 60
           V+K +  L R   W   K  KGS+LVNWR V +P  + GL   NLK  N  LL KW+WRY
Sbjct: 396 VLKKLDRLRREFLWFGTKEGKGSYLVNWRIVQLPKSLGGLRLRNLKIQNECLLMKWLWRY 455

Query: 61  IMKKDALWRRVIVAKYG 76
           + +  ALW+ VI  KYG
Sbjct: 456 VKEDQALWKEVIQCKYG 472

[Close]

BLAST of MS022995 vs. NCBI nr
Match: KAG5568485.1 (hypothetical protein H5410_064493 [Solanum commersonii])

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-09
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 1  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIP--ILGLNTSNLKQNNRSLLGKWIWRY 60
          V K +  L R   W   K  KGS+LVNWR V +P  + GL   NLK  N  LL KW+WRY
Sbjct: 9  VPKKLDRLRREFLWFGTKEGKGSYLVNWRIVQLPKSLGGLRLRNLKIQNECLLMKWLWRY 68

Query: 61 IMKKDALWRRVIVAKYG 76
          + +  ALW+ VI  KYG
Sbjct: 69 VKEDQALWKEVIQCKYG 85

[Close]

BLAST of MS022995 vs. NCBI nr
Match: KAG6723354.1 (hypothetical protein I3842_03G204200 [Carya illinoinensis])

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-09
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1   VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRY 60
           V+K I+ + R   W     E+  HLVNW+KV  P+   GL   NLK  N++LL KW+WRY
Sbjct: 35  VVKIIERIFRNFLWDGIGEERKFHLVNWKKVCTPVTCGGLGVRNLKLFNKALLRKWLWRY 94

Query: 61  IMKKDALWRRVIVAKYG 76
             +  ALW++++ AKYG
Sbjct: 95  SNENKALWKQIVDAKYG 111

[Close]

BLAST of MS022995 vs. NCBI nr
Match: KAG5608422.1 (hypothetical protein H5410_019703 [Solanum commersonii])

HSP 1 Score: 70.1 bits (170), Expect = 9.3e-09
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1   VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRY 60
           V+K +  L R   WK  K  K  +LVNW+ V +     GL   NL+  N SLL KW+WRY
Sbjct: 53  VVKKLDKLRRNFLWKGNKEGKDYNLVNWKNVLLSKERGGLGIRNLRLQNESLLMKWLWRY 112

Query: 61  IMKKDALWRRVIVAKYG 76
           I +  ALW+ VIVAKYG
Sbjct: 113 IEEDAALWKEVIVAKYG 129

[Close]

BLAST of MS022995 vs. NCBI nr
Match: KAG2682775.1 (hypothetical protein I3760_10G000200 [Carya illinoinensis] >KAG7958054.1 hypothetical protein I3843_10G000300 [Carya illinoinensis])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1   VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRY 60
           V K I+ L R   W  +  EK  HLV W+KV  PI   GL   NL   NR+LLGKW+WRY
Sbjct: 67  VEKRIESLFRNFLWVGKGDEKKIHLVGWKKVCQPIDCGGLGIKNLSLFNRALLGKWLWRY 126

Query: 61  IMKKDALWRRVIVAKYG 76
            ++ +A W+ VI  K+G
Sbjct: 127 HLESNAFWKNVIAIKFG 143

[Close]

BLAST of MS022995 vs. ExPASy TrEMBL
Match: A0A2N9HMA0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40621 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.9e-10
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1   VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRY 60
           V   ++ L R   W     +   HLVNW K+  PIP  GL   NL+  N+SLLGKW+WRY
Sbjct: 285 VAHRLEKLQRDFLWDGLGDQPKFHLVNWAKICEPIPSGGLGIKNLQSFNQSLLGKWLWRY 344

Query: 61  IMKKDALWRRVIVAKYG 76
            M +++LWR+V+ AKYG
Sbjct: 345 GMDRESLWRQVVEAKYG 361

[Close]

BLAST of MS022995 vs. ExPASy TrEMBL
Match: A0A2N9EUL2 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6131 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.9e-10
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1    VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRY 60
            V K I+ + R   W + +     HLVNW  +  P    GLN  NL++ N +LLGKW+WR+
Sbjct: 1005 VAKRIEKIQRNFLWGNSEEVINFHLVNWNHICTPYSNGGLNIRNLRRFNEALLGKWLWRF 1064

Query: 61   IMKKDALWRRVIVAKYG 76
             ++++ALWR+V+VAKYG
Sbjct: 1065 GVEREALWRQVVVAKYG 1081

[Close]

BLAST of MS022995 vs. ExPASy TrEMBL
Match: A0A2N9GCH1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28139 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.0e-10
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 6   KMLHRISQWKHEKMEKG----------------------SHLVNWRKV--PIPILGLNTS 65
           KM HR++ WK   + KG                       HLV+W K+  P+   GL   
Sbjct: 785 KMEHRLAGWKRLYLSKGVANRLEKLQRDFLWSGLGSKFKYHLVSWPKICEPVSSGGLAIR 844

Query: 66  NLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG 76
           NL++ N++LLGKW+WRY +++DALWRRV+ AKYG
Sbjct: 845 NLRRFNQALLGKWLWRYGLERDALWRRVVEAKYG 878

[Close]

BLAST of MS022995 vs. ExPASy TrEMBL
Match: A0A2N9FHL6 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14565 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 1    VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRY 60
            V K I+ LHR   W     E+  HLV W +V  PIP  GL   +L   NR+LLGKW+WR+
Sbjct: 1130 VAKRIESLHRNFLWGGMGEEQKLHLVAWDRVCSPIPQGGLGVRHLISFNRALLGKWLWRF 1189

Query: 61   IMKKDALWRRVIVAKYG 76
             +++  LWRRV+VA+YG
Sbjct: 1190 GLEESHLWRRVVVARYG 1206

[Close]

BLAST of MS022995 vs. ExPASy TrEMBL
Match: A0A2N9FKU6 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15695 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 1   VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRY 60
           V K I+ LHR   W     E+  HLV W +V  PIP  GL   +L   NR+LLGKW+WR+
Sbjct: 822 VAKRIESLHRNFLWGGMGEEQKLHLVAWDRVCSPIPQGGLGVRHLISFNRALLGKWLWRF 881

Query: 61  IMKKDALWRRVIVAKYG 76
            +++  LWRRV+VA+YG
Sbjct: 882 GLEESHLWRRVVVARYG 898

The following BLAST results are available for this feature:

BLAST of MS022995 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5611947.1	1.4e-09	48.05	hypothetical protein H5410_023228 [Solanum commersonii]	[more]
KAG5568485.1	5.4e-09	48.05	hypothetical protein H5410_064493 [Solanum commersonii]	[more]
KAG6723354.1	5.4e-09	44.16	hypothetical protein I3842_03G204200 [Carya illinoinensis]	[more]
KAG5608422.1	9.3e-09	48.05	hypothetical protein H5410_019703 [Solanum commersonii]	[more]
KAG2682775.1	1.2e-08	46.75	hypothetical protein I3760_10G000200 [Carya illinoinensis] >KAG7958054.1 hypothe...	[more]

BLAST of MS022995 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022995 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9HMA0	6.9e-10	46.75	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40621 PE=4 SV=1	[more]
A0A2N9EUL2	6.9e-10	44.16	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9GCH1	9.0e-10	40.43	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9FHL6	1.2e-09	48.05	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9FKU6	1.2e-09	48.05	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]

BLAST of MS022995 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022995.1	MS022995.1	mRNA