MS022374 (gene) Bitter gourd (TR) v1

Overview
NameMS022374
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDLH domain-containing protein
Locationscaffold47: 2856752 .. 2856928 (+)
RNA-Seq ExpressionMS022374
SyntenyMS022374
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGCGTCGATTTTACGCTCCTCCTCCTCATCTGGATCGCTTCTCAAAACTTCTACAGCAACCTTCTCCACGCTTCACAAGCTTACCTCCTCAATTTCTCGATTCTCGGTCCGCTCCATGGCCGCTTCTGCCTCCTCCCCTTTCAAGAAAATCCAAATTCAGAGGGGCGACACT

mRNA sequence

ATGCTAGCGTCGATTTTACGCTCCTCCTCCTCATCTGGATCGCTTCTCAAAACTTCTACAGCAACCTTCTCCACGCTTCACAAGCTTACCTCCTCAATTTCTCGATTCTCGGTCCGCTCCATGGCCGCTTCTGCCTCCTCCCCTTTCAAGAAAATCCAAATTCAGAGGGGCGACACT

Coding sequence (CDS)

ATGCTAGCGTCGATTTTACGCTCCTCCTCCTCATCTGGATCGCTTCTCAAAACTTCTACAGCAACCTTCTCCACGCTTCACAAGCTTACCTCCTCAATTTCTCGATTCTCGGTCCGCTCCATGGCCGCTTCTGCCTCCTCCCCTTTCAAGAAAATCCAAATTCAGAGGGGCGACACT

Protein sequence

MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT
Homology
[Close]
BLAST of MS022374 vs. NCBI nr
Match: XP_022136233.1 (uncharacterized protein LOC111007979 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          MLASILRSSSSSGSLLKTSTATFST HKLTSSISRFSVRSMAASASSPFKKIQIQRGDT
Sbjct: 1  MLASILRSSSSSGSLLKTSTATFSTFHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 59

[Close]
BLAST of MS022374 vs. NCBI nr
Match: KAG6572286.1 (WRKY transcription factor 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-07
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          ML S LRSS S   LLKT TA FST HKL  S+SRFSVRSMAASASSPFKKIQI+R  T
Sbjct: 1  MLLSNLRSSISLVPLLKT-TAIFSTAHKLGFSLSRFSVRSMAASASSPFKKIQIERDGT 58

[Close]
BLAST of MS022374 vs. NCBI nr
Match: XP_022952350.1 (uncharacterized protein LOC111455058 [Cucurbita moschata])

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-07
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          ML S LRSS S   LLKT TA FST HKL  S+SRFSVRSMAASASSPFKKIQI+R  T
Sbjct: 1  MLLSNLRSSISLVPLLKT-TAIFSTAHKLGFSLSRFSVRSMAASASSPFKKIQIERDGT 58

[Close]
BLAST of MS022374 vs. NCBI nr
Match: XP_022969206.1 (uncharacterized protein LOC111468273 [Cucurbita maxima])

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-07
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          ML S LRSS S   LLKT TA FST HKL  S+SRFSVRSMAASASSPFKKIQI+R  T
Sbjct: 1  MLLSNLRSSISLVPLLKT-TAIFSTAHKLGFSLSRFSVRSMAASASSPFKKIQIERDGT 58

[Close]
BLAST of MS022374 vs. NCBI nr
Match: KAG7011902.1 (Protein usf [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-07
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          ML S LRSS S   LLKT TA FST HKL  S+SRFSVRSMAASASSPFKKIQI+R  T
Sbjct: 1  MLLSNLRSSISLVPLLKT-TAIFSTAHKLGFSLSRFSVRSMAASASSPFKKIQIERDGT 58

[Close]
BLAST of MS022374 vs. ExPASy TrEMBL
Match: A0A6J1C735 (uncharacterized protein LOC111007979 OS=Momordica charantia OX=3673 GN=LOC111007979 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.4e-18
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          MLASILRSSSSSGSLLKTSTATFST HKLTSSISRFSVRSMAASASSPFKKIQIQRGDT
Sbjct: 1  MLASILRSSSSSGSLLKTSTATFSTFHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 59

[Close]
BLAST of MS022374 vs. ExPASy TrEMBL
Match: A0A6J1HX41 (uncharacterized protein LOC111468273 OS=Cucurbita maxima OX=3661 GN=LOC111468273 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          ML S LRSS S   LLKT TA FST HKL  S+SRFSVRSMAASASSPFKKIQI+R  T
Sbjct: 1  MLLSNLRSSISLVPLLKT-TAIFSTAHKLGFSLSRFSVRSMAASASSPFKKIQIERDGT 58

[Close]
BLAST of MS022374 vs. ExPASy TrEMBL
Match: A0A6J1GLI6 (uncharacterized protein LOC111455058 OS=Cucurbita moschata OX=3662 GN=LOC111455058 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          ML S LRSS S   LLKT TA FST HKL  S+SRFSVRSMAASASSPFKKIQI+R  T
Sbjct: 1  MLLSNLRSSISLVPLLKT-TAIFSTAHKLGFSLSRFSVRSMAASASSPFKKIQIERDGT 58

[Close]
BLAST of MS022374 vs. ExPASy TrEMBL
Match: A0A5A7T9V7 (Protein usf OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004370 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          ML SI+RSS SSGSLLKT  +  ST +KL+SS+SRFSVRSMA  +SSPFKKIQIQR  T
Sbjct: 1  MLFSIIRSSISSGSLLKT-PSIISTPYKLSSSLSRFSVRSMA--SSSPFKKIQIQRDGT 56

[Close]
BLAST of MS022374 vs. ExPASy TrEMBL
Match: A0A1S3C0H7 (protein usf OS=Cucumis melo OX=3656 GN=LOC103495610 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 1  MLASILRSSSSSGSLLKTSTATFSTLHKLTSSISRFSVRSMAASASSPFKKIQIQRGDT 60
          ML SI+RSS SSGSLLKT  +  ST +KL+SS+SRFSVRSMA  +SSPFKKIQIQR  T
Sbjct: 1  MLFSIIRSSISSGSLLKT-PSIISTPYKLSSSLSRFSVRSMA--SSSPFKKIQIQRDGT 56

The following BLAST results are available for this feature:
BLAST of MS022374 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136233.11.1e-1798.31uncharacterized protein LOC111007979 [Momordica charantia][more]
KAG6572286.15.2e-0774.58WRKY transcription factor 6, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022952350.15.2e-0774.58uncharacterized protein LOC111455058 [Cucurbita moschata][more]
XP_022969206.15.2e-0774.58uncharacterized protein LOC111468273 [Cucurbita maxima][more]
KAG7011902.15.2e-0774.58Protein usf [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of MS022374 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS022374 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C7355.4e-1898.31uncharacterized protein LOC111007979 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1HX412.5e-0774.58uncharacterized protein LOC111468273 OS=Cucurbita maxima OX=3661 GN=LOC111468273... [more]
A0A6J1GLI62.5e-0774.58uncharacterized protein LOC111455058 OS=Cucurbita moschata OX=3662 GN=LOC1114550... [more]
A0A5A7T9V73.7e-0671.19Protein usf OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004370 PE... [more]
A0A1S3C0H73.7e-0671.19protein usf OS=Cucumis melo OX=3656 GN=LOC103495610 PE=4 SV=1[more]
BLAST of MS022374 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022374.1MS022374.1mRNA